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2019-03-22gnu: Add starlong....* gnu/packages/bioinformatics.scm (starlong): New variable. Ricardo Wurmus
2019-03-21gnu: r-diversitree: Update to 0.9-11....* gnu/packages/bioinformatics.scm (r-diversitree): Update to 0.9-11. Ricardo Wurmus
2019-03-21gnu: r-maldiquant: Update to 1.19.2....* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.19.2. Ricardo Wurmus
2019-03-21gnu: r-diversitree: Fix typo....* gnu/packages/bioinformatics.scm (r-diversitree)[propagated-inputs]: Fix typo in package labels. Ricardo Wurmus
2019-03-20gnu: r-annotationhub: Update to 2.14.5....* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.5. Ricardo Wurmus
2019-03-20gnu: r-genomicfeatures: Update to 1.34.6....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.6. Ricardo Wurmus
2019-03-20gnu: r-variantannotation: Update to 1.28.13....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.13. Ricardo Wurmus
2019-03-20gnu: r-category: Update to 2.48.1....* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.1. Ricardo Wurmus
2019-03-20gnu: r-dexseq: Update to 1.28.3....* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.3. Ricardo Wurmus
2019-03-20gnu: Add adapterremoval....* gnu/packages/bioinformatics.scm (adapterremoval): New variable. Ricardo Wurmus
2019-03-19gnu: nanopolish: Use python-wrapper....* gnu/packages/bioinformatics.scm (nanopolish)[inputs]: Replace "python" with "python-wrapper" as scripts require "python" executable. Ricardo Wurmus
2019-03-19gnu: nanopolish: Remove bundled library sources....* gnu/packages/bioinformatics.scm (nanopolish)[source]: Add snippet to remove bundled htslib sources. Ricardo Wurmus
2019-03-18gnu: python-biom-format: Fix build....* gnu/packages/bioinformatics.scm (python-biom-format)[source]: Remove generated C files. [arguments]: Disable second broken test. Ricardo Wurmus
2019-03-18gnu: Add bbmap....* gnu/packages/bioinformatics.scm (bbmap): New variable. Ricardo Wurmus
2019-03-18gnu: blasr: Add home page....Reported by Efraim Flashner <efraim@flashner.co.il> on IRC. * gnu/packages/bioinformatics.scm (blasr)[home-page]: Add it. Ricardo Wurmus
2019-03-18gnu: Add arriba....* gnu/packages/bioinformatics.scm (arriba): New variable. Ricardo Wurmus
2019-03-18gnu: Add blasr....* gnu/packages/bioinformatics.scm (blasr): New variable. Ricardo Wurmus
2019-03-18gnu: Add blasr-libcpp....* gnu/packages/bioinformatics.scm (blasr-libcpp): New variable. Ricardo Wurmus
2019-03-18gnu: Add pbbam....* gnu/packages/bioinformatics.scm (pbbam): New variable. Ricardo Wurmus
2019-03-15gnu: Add bwa-meth....* gnu/packages/bioinformatics.scm (bwa-meth): New variable. Ricardo Wurmus
2019-03-13gnu: Add python-velocyto....* gnu/packages/bioinformatics.scm (python-velocyto): New variable. Ricardo Wurmus
2019-03-13gnu: python-loompy: Update to 2.0.17....* gnu/packages/bioinformatics.scm (python-loompy): Update to 2.0.17. [source]: Fetch via git. [arguments]: Enable tests, replace "check" phase. [propagated-inputs]: Add python-pandas. [native-inputs]: Add python-pytest. Ricardo Wurmus
2019-03-13gnu: Add tetoolkit....* gnu/packages/bioinformatics.scm (tetoolkit): New variable. Ricardo Wurmus
2019-03-12gnu: r-qvalue: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-qvalue): Move from here... * gnu/packages/bioconductor.scm (r-qvalue): ...to here. Ricardo Wurmus
2019-03-08gnu: blast+: Update to 2.7.1....* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1. [inputs]: Add lmdb. [source]: Remove obsolete patch. * gnu/package/patches/blast+-fix-makefile.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2019-03-08gnu: r-mzr: Update to 2.16.2....* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.2. [inputs]: Replace "boost" with "boost-for-mysql". Ricardo Wurmus
2019-03-08gnu: r-gviz: Update to 1.26.5....* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.5. Ricardo Wurmus
2019-03-08gnu: r-ensembldb: Update to 2.6.7....* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.7. Ricardo Wurmus
2019-03-08gnu: r-annotationhub: Update to 2.14.4....* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.4. Ricardo Wurmus
2019-03-08gnu: r-rhtslib: Update to 1.14.1....* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.1. Ricardo Wurmus
2019-03-08gnu: r-genomicfeatures: Update to 1.34.4....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.4. Ricardo Wurmus
2019-03-08gnu: r-rtracklayer: Update to 1.42.2....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.2. Ricardo Wurmus
2019-03-08gnu: r-rsamtools: Update to 1.34.1....* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.1. Ricardo Wurmus
2019-03-08gnu: r-biocparallel: Update to 1.16.6....* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.6. Ricardo Wurmus
2019-03-08gnu: r-variantannotation: Update to 1.28.11....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.11. Ricardo Wurmus
2019-03-08gnu: r-genomeinfodb: Update to 1.18.2....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.2. Ricardo Wurmus
2019-03-08gnu: r-dexseq: Update to 1.28.2....* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.2. Ricardo Wurmus
2019-03-07gnu: cd-hit: Support longer sequences....* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make flags. Ricardo Wurmus
2019-03-06gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here. Ricardo Wurmus
2019-03-06gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here. Ricardo Wurmus
2019-03-06gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-dm-eg-db): ...to here. Ricardo Wurmus
2019-03-06gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here. Ricardo Wurmus
2019-03-06gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Move from here... * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): ...to here. Ricardo Wurmus
2019-03-06gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3): ...to here. Ricardo Wurmus
2019-03-06gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here. Ricardo Wurmus
2019-03-06gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here. Ricardo Wurmus
2019-03-06gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here. Ricardo Wurmus
2019-03-06gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here. Ricardo Wurmus
2019-03-06gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here. Ricardo Wurmus
2019-03-06gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconduct......* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): ...to here. Ricardo Wurmus
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