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2020-06-22gnu: deeptools: Deprecate in favor of python-deeptools....And make sure python-deeptools's tests are running. * gnu/packages/bioinformatics.scm (python-deeptools): Fetch source using git. [native-inputs]: Add python-mock and python-nose. (deeptools): Mark as deprecated. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Pierre Langlois
2020-06-22gnu: r-hdf5array: Update to 1.16.1....* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.1. Ricardo Wurmus
2020-06-22gnu: r-rhdf5: Update to 2.32.1....* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.1. Ricardo Wurmus
2020-06-22gnu: r-biomart: Update to 2.44.1....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.44.1. Ricardo Wurmus
2020-06-22gnu: r-genomeinfodb: Update to 1.24.2....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.24.2. Ricardo Wurmus
2020-06-22gnu: express: Update to 1.5.3....* gnu/packages/bioinformatics.scm (express): Update to 1.5.3. [source]: Fetch from Github. [arguments]: Add phase "remove-update-check". Ricardo Wurmus
2020-06-15gnu: r-limma: Update to 3.44.3....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.44.3. Ricardo Wurmus
2020-06-13gnu: r-mzr: Update to 2.22.0....* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.22.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-delayedmatrixstats: Update to 1.10.0....* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.10.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-scran: Update to 1.16.0....* gnu/packages/bioinformatics.scm (r-scran): Update to 1.16.0. [propagated-inputs]: Add r-iranges. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-scater: Update to 1.16.1....* gnu/packages/bioinformatics.scm (r-scater): Update to 1.16.1. [propagated-inputs]: Add r-rlang. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-singlecellexperiment: Update to 1.10.1....* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.10.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-beachmat: Update to 2.4.0....* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.4.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-rhdf5lib: Update to 1.10.0....* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.10.0. [source]: Update snippet. [arguments]: Replace ZLIB variables in Makevars. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-hdf5array: Update to 1.16.0....* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.0. Ricardo Wurmus
2020-06-13gnu: r-hitc: Update to 1.32.0....* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.32.0. Ricardo Wurmus
2020-06-13gnu: r-fithic: Update to 1.14.0....* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.14.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-sushi: Update to 1.26.0....* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.26.0. Ricardo Wurmus
2020-06-13gnu: r-gwascat: Update to 2.20.1....* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.20.1. [propagated-inputs]: Remove r-homo-sapiens; add r-ggplot2. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-gviz: Update to 1.32.0....* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.32.0. [propagated-inputs]: Add r-ensembldb. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-gqtlstats: Update to 1.20.0....* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.20.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-ldblock: Update to 1.18.0....* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.18.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-erma: Update to 1.4.0....* gnu/packages/bioinformatics.scm (r-erma): Update to 1.4.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-snpstats: Update to 1.38.0....* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.38.0. Ricardo Wurmus
2020-06-13gnu: r-gqtlbase: Update to 1.20.0....* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.20.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-ggbio: Update to 1.36.0....* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.36.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-biovizbase: Update to 1.36.0....* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.36.0. Ricardo Wurmus
2020-06-13gnu: r-organismdbi: Update to 1.30.0....* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.30.0. Ricardo Wurmus
2020-06-13gnu: r-ensembldb: Update to 2.12.1....* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.12.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-dirichletmultinomial: Update to 1.30.0....* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.30.0. Ricardo Wurmus
2020-06-13gnu: r-complexheatmap: Update to 2.4.2....* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.2. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-genomicfiles: Update to 1.24.0....* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.24.0. Ricardo Wurmus
2020-06-13gnu: r-gage: Update to 2.37.0....* gnu/packages/bioinformatics.scm (r-gage): Update to 2.37.0. Ricardo Wurmus
2020-06-13gnu: r-keggrest: Update to 1.28.0....* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.28.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-fastseg: Update to 1.34.0....* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.34.0. Ricardo Wurmus
2020-06-13gnu: r-annotationhub: Update to 2.20.0....* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-interactivedisplaybase: Update to 1.26.3....* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.26.3. [propagated-inputs]: Add r-dt. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-edaseq: Update to 2.22.0....* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.22.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-deseq: Update to 1.39.0....* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.39.0. Ricardo Wurmus
2020-06-13gnu: r-aroma-light: Update to 3.18.0....* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.18.0. Ricardo Wurmus
2020-06-13gnu: r-msnid: Update to 1.22.0....* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.22.0. Ricardo Wurmus
2020-06-13gnu: r-msnbase: Update to 2.14.2....* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.14.2. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-pcamethods: Update to 1.80.0....* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.80.0. Ricardo Wurmus
2020-06-13gnu: r-mzid: Update to 1.26.0....* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.26.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-vsn: Update to 3.56.0....* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.56.0. Ricardo Wurmus
2020-06-13gnu: r-affy: Update to 1.66.0....* gnu/packages/bioinformatics.scm (r-affy): Update to 1.66.0. Ricardo Wurmus
2020-06-13gnu: r-affyio: Update to 1.58.0....* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.58.0. Ricardo Wurmus
2020-06-13gnu: r-protgenerics: Update to 1.20.0....* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.20.0. Ricardo Wurmus
2020-06-13gnu: r-sva: Update to 3.36.0....* gnu/packages/bioinformatics.scm (r-sva): Update to 3.36.0. [propagated-inputs]: Add r-edger. Ricardo Wurmus
2020-06-13gnu: r-methylkit: Update to 1.14.2....* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.14.2. Ricardo Wurmus
generated by cgit v1.2.3 (git 2.46.2) at 2024-12-27 05:29:30 +0000