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2016-10-26gnu: r-go-db: Update to 3.4.0....* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.4.0. Ricardo Wurmus
2016-10-26gnu: r-genomicfeatures: Update to 1.26.0....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.0. Ricardo Wurmus
2016-10-26gnu: r-rtracklayer: Update to 1.34.0....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.0. Ricardo Wurmus
2016-10-26gnu: r-genomicalignments: Update to 1.10.0....* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.10.0. Ricardo Wurmus
2016-10-26gnu: r-summarizedexperiment: Update to 1.4.0....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.4.0. Ricardo Wurmus
2016-10-26gnu: r-rsamtools: Update to 1.26.1....* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.1. Ricardo Wurmus
2016-10-26gnu: r-biostrings: Update to 2.42.0....* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.0. Ricardo Wurmus
2016-10-26gnu: r-biocparallel: Update to 1.8.0....* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.0. Ricardo Wurmus
2016-10-26gnu: r-biomart: Update to 2.30.0....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.30.0. Ricardo Wurmus
2016-10-26gnu: r-annotationdbi: Update to 1.36.0....* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.0. Ricardo Wurmus
2016-10-26gnu: r-biobase: Update to 2.34.0....* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.34.0. Ricardo Wurmus
2016-10-26gnu: r-genomicranges: Update to 1.26.1....* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.1. [propagated-inputs]: Add r-iranges, r-s4vectors. Ricardo Wurmus
2016-10-26gnu: r-xvector: Update to 0.14.0....* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0. Ricardo Wurmus
2016-10-26gnu: r-limma: Update to 3.30.0....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0. Ricardo Wurmus
2016-10-26gnu: r-variantannotation: Update to 1.20.0....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.0. [propagated-inputs]: Add r-biobase, r-biostrings, r-iranges, r-rtracklayer, r-s4vectors, r-xvector. Ricardo Wurmus
2016-10-26gnu: r-edger: Update to 3.16.0....* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0. [propagated-inputs]: Add r-locfit. Ricardo Wurmus
2016-10-26gnu: r-genomeinfodb: Update to 1.10.0....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0. Ricardo Wurmus
2016-10-26gnu: r-iranges: Update to 2.8.0....* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0. Ricardo Wurmus
2016-10-26gnu: r-s4vectors: Update to 0.12.0....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0. Ricardo Wurmus
2016-10-26gnu: r-dnacopy: Update to 1.48.0....* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0. Ricardo Wurmus
2016-10-26gnu: r-biocinstaller: Update to 1.24.0....* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.24.0. Ricardo Wurmus
2016-10-26gnu: r-biocgenerics: Update to 0.20.0....* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.20.0. Ricardo Wurmus
2016-10-26gnu: r-grohmm: Update to 1.8.0....* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.8.0. Ricardo Wurmus
2016-10-26gnu: r-systempiper: Update to 1.8.1....* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.8.1. Ricardo Wurmus
2016-10-26gnu: r-shortread: Update to 1.32.0....* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.0. Ricardo Wurmus
2016-10-26gnu: r-gostats: Update to 2.40.0....* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.40.0. Ricardo Wurmus
2016-10-26gnu: r-category: Update to 2.40.0....* gnu/packages/bioinformatics.scm (r-category): Update to 2.40.0. Ricardo Wurmus
2016-10-26gnu: r-gseabase: Update to 1.36.0....* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.36.0. Ricardo Wurmus
2016-10-26gnu: r-rbgl: Update to 1.50.0....* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.50.0. Ricardo Wurmus
2016-10-26gnu: r-annotationforge: Update to 1.16.0....* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.0. [propagated-inputs]: Add r-rcurl. Ricardo Wurmus
2016-10-26gnu: r-deseq2: Update to 1.14.0....* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.0. Ricardo Wurmus
2016-10-26gnu: r-genefilter: Update to 1.56.0....* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.56.0. Ricardo Wurmus
2016-10-26gnu: r-geneplotter: Update to 1.52.0....* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.52.0. Ricardo Wurmus
2016-10-26gnu: r-annotate: Update to 1.52.0....* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.0. Ricardo Wurmus
2016-10-20gnu: Add r-bioccheck....* gnu/packages/bioinformatics.scm (r-bioccheck): New variable. Roel Janssen
2016-10-19gnu: Add r-biocstyle....* gnu/packages/bioinformatics.scm (r-biocstyle): New variable. Roel Janssen
2016-10-19gnu: Add r-biocviews....* gnu/packages/bioinformatics.scm (r-biocviews): New variable. Roel Janssen
2016-10-19gnu: Add r-optparse....* gnu/packages/bioinformatics.scm (r-optparse): New variable. Roel Janssen
2016-10-19gnu: Add r-getopt....* gnu/packages/bioinformatics.scm (r-getopt): New variable. Roel Janssen
2016-10-17gnu: Add rcas-web....* gnu/packages/bioinformatics.scm (rcas-web): New variable. Ricardo Wurmus
2016-10-17gnu: Add r-rcas....* gnu/packages/bioinformatics.scm (r-rcas): New variable. Ricardo Wurmus
2016-10-11gnu: vsearch: Update to 2.3.0....* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.0. Ben Woodcroft
2016-10-11gnu: diamond: Update to 0.8.23....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.23. Ben Woodcroft
2016-10-08gnu: python2-dendropy: Fix tests....* gnu/packages/bioinformatics.scm (python2-dendropy)[source]: Use unpatched source. [arguments]: Use nose to run tests. [native-inputs]: Add python2-nose. Ben Woodcroft
2016-10-06gnu: Add r-bsgenome-celegans-ucsc-ce10....* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): New variable. Ricardo Wurmus
2016-10-04gnu: metabat: Update to 0.32.4-1.cbdca756....* gnu/packages/bioinformatics.scm (metabat): Update to 0.32.4-1.cbdca756. * gnu/packages/patches/metabat-remove-compilation-date.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft
2016-10-02gnu: vsearch: Update to 2.1.2....* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.2. Ben Woodcroft
2016-09-28gnu: sra-tools: Fix build on i686....* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass "VDB_LIBDIR" in make-flags; dynamically link libmagic. Ricardo Wurmus
2016-09-27gnu: python-plastid: Update to 1.4.6....* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to 1.4.6. [propagated-inputs]: Add python-termcolor. Ben J Woodcroft
2016-09-27gnu: python-pysam: Enable tests....* gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from PyPi to source archive due to missing test data. [arguments]: Add check phase after install. [native-inputs]: Add python-nose, samtools and bcftools. Marius Bakke
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