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2020-09-30gnu: Fix package references.Efraim Flashner
* gnu/packages/algebra.scm (iml)[inputs]: Correctly refer to package inputs. * gnu/packages/astronomy.scm (xplanet), * gnu/packages/audio.scm (redkite, libaudec, lv2lint, lv2toweb), * gnu/packages/bioconductor.scm (r-cummerbund), * gnu/packages/chicken.scm (chicken), * gnu/packages/conky.scm (conky), * gnu/packages/cran.scm (r-latex2exp), * gnu/packages/crates-io.scm (rust-rgb), * gnu/packages/databases.scm (mariadb), * gnu/packages/diffoscope.scm (reprotest), * gnu/packages/file-systems.scm (glusterfs), * gnu/packages/finance.scm (electron-cash), * gnu/packages/games.scm (rinutils, ksudoku, kdiamond, kigo), * gnu/packages/geo.scm (grass), * gnu/packages/gnome.scm (libmediaart, gnome-contacts, geoclue), * gnu/packages/gnucash.scm (aqbanking), * gnu/packages/image.scm (mtpaint), * gnu/packages/kde-internet.scm (kopete, ktorrent), * gnu/packages/kde-utils.scm (kmousetool, kmouth, kronometer), * gnu/packages/linphone.scm (liblinphone), * gnu/packages/maths.scm (ppl), * gnu/packages/mercury.scm (mercury-minimal), * gnu/packages/music.scm (bjumblr, bschaffl, lsp-plugins, spectacle-analyzer, helm, tap-lv2, wolf-shaper, shiru-lv2), * gnu/packages/networking.scm (restinio), * gnu/packages/prolog.scm (swi-prolog), * gnu/packages/python-web.scm (gunicorn), * gnu/packages/python-xyz.scm (python-docusign-esign), * gnu/packages/ruby.scm (ruby-cucumber, ruby_version, ruby-addressable), * gnu/packages/sagemath.scm (python-cypari2), * gnu/packages/skarnet.scm (s6-linux-init), * gnu/packages/vpn.scm (sshuttle), * gnu/packages/web.scm (libcyaml), * gnu/packages/xdisorg.scm (kbdd), * gnu/packages/xorg.scm (xpra): Same.
2020-09-23gnu: Fix typoes in package descriptions.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (caps-plugins-lv2)[synopsis]: Fix typo. * gnu/packages/bioconductor.scm (r-karyoploter, r-anota, r-gcrma) (r-bigmemoryextras)[description]: Likewise. * gnu/packages/cran.scm (r-geometry)[synopsis]: Likewise. (r-stringdist, r-patchwork, r-depth, r-tea)[description]: Likewise. * gnu/packages/crates-io.scm (rust-assert-fs-0.11, rust-notify-4) (rust-tokio-fs-0.1)[synopsis, description]: Likewise. (rust-blas-sys-0.7)[description]: Likewise. (rust-fs-extra-1.1, rust-xattr-0.2)[synopsis]: Likewise. * gnu/packages/databases.scm (perl-mysql-config)[description]: Likewise. * gnu/packages/disk.scm (hddtemp)[description]: Likewise. * gnu/packages/django.scm (python-djangorestframework)[description]: Likewise. * gnu/packages/documentation.scm (doc++)[description]: Likewise. * gnu/packages/emacs-xyz.scm (emacs-kakoune, emacs-pyim-basedict, eless) (emacs-scpaste)[description]: Likewise. * gnu/packages/file-systems.scm (dbxfs)[description]: Likewise. * gnu/packages/finance.scm (python-stdnum)[description]: Likewise. * gnu/packages/fontutils.scm (woff2)[description]: Likewise. * gnu/packages/games.scm (openttd-opengfx)[description]: Likewise. * gnu/packages/gnome-xyz.scm (gnome-shell-extension-topicons-redux) [description]: Likewise. * gnu/packages/gnome.scm (libgrss)[description]: Likewise. * gnu/packages/golang.scm (go-github-com-mitchellh-reflectwalk) [description]: Likewise. (go-github-com-go-git-go-billy)[synopsis, description]: Likewise. * gnu/packages/haskell-check.scm (ghc-inspection-testing)[description]: Likewise. * gnu/packages/haskell-web.scm (ghc-yesod-form)[description]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-hex)[description]: Likewise. * gnu/packages/hyperledger.scm (hyperledger-iroha-ed25519)[description]: Likewise. * gnu/packages/java.scm (java-mail)[synopsis]: Likewise. (java-native-access-platform)[description]: Likewise. * gnu/packages/kde-frameworks.scm (kactivities-stats)[description]: Likewise. * gnu/packages/kde-utils.scm (krusader)[description]: Likewise. * gnu/packages/language.scm (praat)[description]: Likewise. * gnu/packages/linux.scm (light)[description]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.defclass-star)[description]: Likewise. * gnu/packages/mail.scm (dovecot-trees, sieve-connect)[description]: Likewise. * gnu/packages/ocaml.scm (ocaml-opam-file-format, ocaml-cppo) (ocaml4.07-ppx-variants-conv)[description]: Likewise. * gnu/packages/perl.scm (perl-convert-binhex)[description]: Likewise. * gnu/packages/python-crypto.scm (python-ecdsa)[description]: Likewise. * gnu/packages/python-web.scm (python-html5lib)[synopsis, description]: Likewise. (python-venusian)[synopsis]: Likewise. * gnu/packages/python-xyz.scm (python-readlike, python-gssapi) (python-flufl-i18n)[description]: Likewise. (python-pox, python-watchdog, python-xattr)[synopsis, description]: Likewise. * gnu/packages/ruby.scm (ruby-sorcerer)[description]: Likewise. * gnu/packages/rust-apps.scm (watchexec)[description]: Likewise. * gnu/packages/rust.scm (mrustc)[synopsis]: Likewise. * gnu/packages/shells.scm (s-shell)[description]: Likewise. * gnu/packages/ssh.scm (sshpass)[description]: Likewise. * gnu/packages/terminals.scm (beep)[description]: Likewise. * gnu/packages/web.scm (perl-lwp-useragent-cached)[description]: Likewise. * gnu/packages/wv.scm (wv)[description]: Likewise.
2020-09-14gnu: r-wgcna: Move to (gnu packages bioconductor).Ricardo Wurmus
This is a follow-up to commit 6e0ab26f31cd2bb7e5d88719d3d458df68c1963e. * gnu/packages/cran.scm (r-wgcna): Move from here... * gnu/packages/bioconductor.scm (r-wgcna): ...to here.
2020-09-14gnu: r-fourcseq: Move to (gnu packages bioconductor).zimoun
* gnu/packages/cran.scm (r-fourcseq): Move from here... * gnu/packages/bioconductor.scm (r-fourcseq): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-diversitree: Update to 0.9-14.Ricardo Wurmus
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-14.
2020-09-14gnu: r-seurat: Update to 3.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat): Update to 3.2.1. [propagated-inputs]: Remove r-ape; add r-matrixstats.
2020-09-14gnu: r-rfast: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rfast): Update to 2.0.1.
2020-09-14gnu: r-scatterpie: Update to 0.1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5.
2020-09-14gnu: r-forecast: Update to 8.13.Ricardo Wurmus
* gnu/packages/cran.scm (r-forecast): Update to 8.13.
2020-09-14gnu: r-gamlss: Update to 5.2-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gamlss): Update to 5.2-0.
2020-09-14gnu: r-parameters: Update to 0.8.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.8.5.
2020-09-14gnu: r-systemfonts: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.1.
2020-09-14gnu: r-dalex: Update to 2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dalex): Update to 2.0.
2020-09-14gnu: r-sf: Update to 0.9-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 0.9-6.
2020-09-14gnu: r-deldir: Update to 0.1-29.Ricardo Wurmus
* gnu/packages/cran.scm (r-deldir): Update to 0.1-29.
2020-09-14gnu: r-shinyjs: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyjs): Update to 2.0.0. [native-inputs]: Add r-knitr.
2020-09-14gnu: r-etm: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-etm): Update to 1.1.1.
2020-09-14gnu: r-fields: Update to 11.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-fields): Update to 11.4.
2020-09-14gnu: r-rnifti: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rnifti): Update to 1.2.2.
2020-09-14gnu: r-misc3d: Update to 0.9-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-misc3d): Update to 0.9-0.
2020-09-14gnu: r-rcpphnsw: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcpphnsw): Update to 0.3.0.
2020-09-14gnu: r-ggeffects: Update to 0.16.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 0.16.0.
2020-09-14gnu: r-performance: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-performance): Update to 0.5.0.
2020-09-14gnu: r-mosaicdata: Update to 0.20.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-mosaicdata): Update to 0.20.1.
2020-09-14gnu: r-mosaiccore: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mosaiccore): Update to 0.8.0. [propagated-inputs]: Remove r-lazyeval.
2020-09-14gnu: r-flextable: Update to 0.5.11.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): Update to 0.5.11.
2020-09-14gnu: r-insight: Update to 0.9.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.9.5.
2020-09-14gnu: r-officer: Update to 0.3.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-officer): Update to 0.3.14.
2020-09-14gnu: r-extradistr: Update to 1.9.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-extradistr): Update to 1.9.1.
2020-09-14gnu: r-tsa: Update to 1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-tsa): Update to 1.3. [propagated-inputs]: Add r-tseries.
2020-09-14gnu: r-xfun: Update to 0.17.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.17.
2020-09-14gnu: r-processx: Update to 3.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-processx): Update to 3.4.4.
2020-09-14gnu: r-xts: Update to 0.12.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-xts): Update to 0.12.1.
2020-09-14gnu: r-psych: Update to 2.0.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-psych): Update to 2.0.8.
2020-09-14gnu: r-inline: Update to 0.3.16.Ricardo Wurmus
* gnu/packages/cran.scm (r-inline): Update to 0.3.16.
2020-09-14gnu: r-lmtest: Update to 0.9-38.Ricardo Wurmus
* gnu/packages/cran.scm (r-lmtest): Update to 0.9-38.
2020-09-14gnu: r-shape: Update to 1.4.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-shape): Update to 1.4.5.
2020-09-14gnu: r-jsonlite: Update to 1.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-jsonlite): Update to 1.7.1.
2020-09-14gnu: r-callr: Update to 3.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-callr): Update to 3.4.4.
2020-09-14gnu: r-ggpmisc: Update to 0.3.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.6. [propagated-inputs]: Add r-glue.
2020-09-11gnu: r-adaptivesparsity: End build phase on #T.Ricardo Wurmus
* gnu/packages/cran.scm (r-adaptivesparsity)[arguments]: End phase "link-against-armadillo" with Boolean.
2020-09-11gnu: r-adaptivesparsity: Fix case of "Gaussian".Ricardo Wurmus
* gnu/packages/cran.scm (r-adaptivesparsity)[description]: Fix typo.
2020-09-11gnu: r-qtl: Use CRAN-URI.Ricardo Wurmus
* gnu/packages/cran.scm (r-qtl)[source]: Use CRAN-URI instead of explicit mirror URL.
2020-09-11gnu: r-qtl: Correct indentation.Ricardo Wurmus
* gnu/packages/cran.scm (r-qtl): Reindent. [description]: Reflow paragraphs.
2020-09-11gnu: r-absfiltergsea: Move to (gnu packages cran).zimoun
* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here... * gnu/packages/cran.scm (r-absfiltergsea): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11gnu: r-diversitree: Move to (gnu packages cran).zimoun
* gnu/packages/bioinformatics.scm (r-diversitree): Move from here... * gnu/packages/cran.scm (r-diversitree): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11gnu: r-phangorn: Move to (gnu packages cran).zimoun
* gnu/packages/bioinformatics.scm (r-phangorn): Move from here... * gnu/packages/cran.scm (r-phangorn): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11gnu: r-seurat: Move to (gnu packages cran).zimoun
* gnu/packages/bioinformatics.scm (r-seurat): Move from here... * gnu/packages/cran.scm (r-seurat): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11gnu: r-maldiquant: Move to (gnu packages cran).zimoun
* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here... * gnu/packages/cran.scm (r-maldiquant): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11gnu: r-seqminer: Move to (gnu packages cran).zimoun
* gnu/packages/bioinformatics.scm (r-seqminer): Move from here... * gnu/packages/cran.scm (r-seqminer): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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