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2019-03-14build-system/go: Build with a filesystem union of Go dependencies.Leo Famulari
This basically changes (guix build-system go) so that instead of looking up its dependencies in a list of directories in $GOPATH, all the Go dependencies are symlinked into a single directory. Fixes <https://bugs.gnu.org/33620>. * guix/build/go-build-system.scm (setup-go-environment): New variable. (setup-environment, install-source): Remove variables. (unpack): Unpack the source relative to $GOPATH. (install): Do not install the compiled objects in the 'pkg' directory. Install the source code in this phase, and only install the source of the package named by IMPORT-PATH. * doc/guix.texi (Build Systems): Adjust accordingly. * gnu/packages/docker.scm (docker): Import (guix build union) on the build side and adjust to build phase name changes in (guix build-system go). * gnu/packages/shellutils.scm (direnv): Likewise. * gnu/packages/databases.scm (mongo-tools)[arguments]: Set '#:install-source #f'. * gnu/packages/music.scm (demlo)[arguments]: Move the 'install-scripts' phase after the 'install' phase.
2019-03-12gnu: python-sqlalchemy: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-sqlalchemy)[home-page]: Use HTTPS.
2019-03-12gnu: python-sqlalchemy: Update to 1.3.1.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.1.
2019-03-12gnu: python-sql: Update to 1.0.0.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-sql): Update to 1.0.0.
2019-03-12gnu: python-pyodbc: Update to 4.0.25.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.25.
2019-03-12gnu: python-psycopg2: Update to 2.7.7.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-psycopg2): Update to 2.7.7.
2019-03-12gnu: perl-dbd-sqlite: Update to 1.62.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.62.
2019-03-12gnu: perl-dbd-mysql: Update to 4.050.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.050.
2019-03-12gnu: perl-sql-abstract: Update to 1.86.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.86.
2019-03-04gnu: rocksdb: Update to 5.18.3.Marius Bakke
* gnu/packages/databases.scm (rocksdb): Update to 5.18.3.
2019-03-04gnu: python-rq: Update to 0.13.0.Julien Lepiller
* gnu/packages/databases.scm (python-rq): Update to 0.13.0.
2019-03-04gnu: python-redis: Update to 3.2.0.Julien Lepiller
* gnu/packages/databases.scm (python-redis): Update to 3.2.0.
2019-03-02gnu: tdb: Update to 1.3.18.Marius Bakke
* gnu/packages/databases.scm (tdb): Update to 1.3.18. [native-inputs]: Add WHICH. Change PYTHON-2 to PYTHON.
2019-02-27gnu: lmdb: Update to 0.9.23.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (lmdb): Update to 0.9.23.
2019-02-27gnu: lmdb: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (lmdb)[source]: Use GIT-FETCH and GIT-FILE-NAME. [arguments]: Adjust source directory name.
2019-02-19gnu: memcached: Update to 1.5.12.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (memcached): Update to 1.5.12.
2019-02-19gnu: python-pymysql: Update to 0.9.3.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pymysql): Update to 0.9.3.
2019-02-19gnu: perl-db-file: Update to 1.843.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-db-file): Update to 1.843.
2019-02-17gnu: Remove unneeded uses of python{,2}-minimal.Marius Bakke
The "python-minimal" package exists mostly to resolve a dependency cycle. To reduce duplication, packages should prefer the regular Python variants. * gnu/packages/admin.scm (htop)[native-inputs]: Change PYTHON-MINIMAL-WRAPPER to PYTHON-WRAPPER. * gnu/packages/crypto.scm (botan)[native-inputs]: Likewise. * gnu/packages/bioinformatics.scm (sambamba)[native-inputs]: Change PYTHON-MINIMAL to PYTHON. * gnu/packages/dictionaries.scm (apertium)[native-inputs]: Likewise. * gnu/packages/databases.scm (mongodb)[native-inputs]: Change PYTHON2-MINIMAL to PYTHON2. * gnu/packages/games.scm (openttd-opensfx, openttd-openmsx)[native-inputs]: Likewise. * gnu/packages/gnome.scm (deja-dup)[native-inputs]: Likewise.
2019-02-14gnu: PostgreSQL 9.6: Update to 9.6.12.Leo Famulari
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.12.
2019-02-14gnu: PostgreSQL: Update to 10.7.Leo Famulari
* gnu/packages/databases.scm (postgresql): Update to 10.7.
2019-02-12gnu: perl-dbi: Update to 1.642.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbi): Update to 1.642.
2019-02-12gnu: kyotocabinet: Update to 1.2.77.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (kyotocabinet): Update to 1.2.77.
2019-02-06gnu: mariadb: Add comments about failing tests.Marius Bakke
* gnu/packages/databases.scm (mariadb): Add comments.
2019-01-31Merge branch 'master' into stagingMarius Bakke
2019-01-25gnu: python-sqlalchemy: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/databases.scm (python-sqlalchemy)[source]: Use PYPI-URI.
2019-01-22gnu: mariadb: Disable sporadically failing tests.Carl Dong
* guix/packages/databases.scm: Disable sporadically failing tests. Signed-off-by: Eric Bavier <bavier@member.fsf.org>
2019-01-20Merge branch 'master' into stagingLudovic Courtès
2019-01-16gnu: Move dbm databases to new module.Ricardo Wurmus
* gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here... * gnu/packages/dbm.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/audio.scm, gnu/packages/avahi.scm, gnu/packages/backup.scm, gnu/packages/cobol.scm, gnu/packages/cyrus-sasl.scm, gnu/packages/databases.scm, gnu/packages/finance.scm, gnu/packages/game-development.scm, gnu/packages/gnome.scm, gnu/packages/guile.scm, gnu/packages/ibus.scm, gnu/packages/kerberos.scm, gnu/packages/linux.scm, gnu/packages/mail.scm, gnu/packages/man.scm, gnu/packages/nvi.scm, gnu/packages/openldap.scm, gnu/packages/package-management.scm, gnu/packages/php.scm, gnu/packages/pulseaudio.scm, gnu/packages/python.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/sawfish.scm: Update module references.
2019-01-16gnu: Move sqlite to separate module.Ricardo Wurmus
* gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5, sqlite-with-column-metadata): Move variables from here... * gnu/packages/sqlite.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/apl.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/code.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/dc.scm, gnu/packages/disk.scm, gnu/packages/ebook.scm, gnu/packages/education.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/file-systems.scm, gnu/packages/freedesktop.scm, gnu/packages/ftp.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gps.scm, gnu/packages/guile.scm, gnu/packages/ibus.scm, gnu/packages/kerberos.scm, gnu/packages/kodi.scm, gnu/packages/lisp.scm, gnu/packages/mail.scm, gnu/packages/messaging.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nfs.scm, gnu/packages/ocaml.scm, gnu/packages/package-management.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/php.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/scheme.scm, gnu/packages/sync.scm, gnu/packages/syndication.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/web-browsers.scm, gnu/packages/webkit.scm: Adjust module references.
2019-01-15gnu: Separate Python core packages from the rest.Ricardo Wurmus
* gnu/packages/python.scm: Move hundreds of package definitions from here... * gnu/packages/python-xyz.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/benchmark.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/cluster.scm, gnu/packages/compression.scm, gnu/packages/connman.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/direct-connect.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/elf.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/enlightenment.scm, gnu/packages/finance.scm, gnu/packages/fltk.scm, gnu/packages/fontutils.scm, gnu/packages/freedesktop.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/gtk.scm, gnu/packages/ham-radio.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/kde-frameworks.scm, gnu/packages/key-mon.scm, gnu/packages/libffi.scm, gnu/packages/libreoffice.scm, gnu/packages/libusb.scm, gnu/packages/lirc.scm, gnu/packages/logging.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/medical.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nutrition.scm, gnu/packages/openldap.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/polkit.scm, gnu/packages/protobuf.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/qt.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/search.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/simulation.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wicd.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm: Update module references.
2019-01-09Merge remote-tracking branch 'origin/master' into stagingEfraim Flashner
2019-01-07gnu: r-rmysql: Move from databases.scm to cran.scmRicardo Wurmus
* gnu/packages/databases.scm (r-rmysql): Move from here... * gnu/packages/cran.scm (r-rmysql): ...to here.
2019-01-06gnu: recutils: Update to 1.8.Efraim Flashner
* gnu/packages/databases.scm (recutils): Update to 1.8. [source]: Remove snippet. [arguments]: Remove custom 'set-bash4.4-header-location phase. Enable parallel tests. [inputs]: Move check ... [native-inputs]: ... to here. Add pkg-config.
2018-12-22Merge branch 'master' into stagingMarius Bakke
2018-12-18gnu: sqlite: Replace with 3.26.0 [security fixes].Alex Vong
Fixes <https://bugs.gnu.org/33751>. Reported by Marius Bakke <mbakke@fastmail.com>. * gnu/packages/databases.scm (sqlite-3.26.0): New public variable. (sqlite)[replacement]: Use it. (sqlite-with-fts5): Use 'package/inherit'. (sqlite-with-column-metadata): Likewise. Modified-by: Mark H Weaver <mhw@netris.org>
2018-12-09Merge branch 'master' into stagingMarius Bakke
2018-12-04gnu: mongo-tools: Fix build.Christopher Baines
I guess this broke when upgrading go. I did try upgrading to the later patch and minor releases, but they had similar problems, so lets upgrade separately. * gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.
2018-12-03Merge branch 'master' into stagingMarius Bakke
2018-11-29Merge branch 'master' into core-updatesMarius Bakke
2018-11-24gnu: sqlcipher: Update to 3.4.2.Brett Gilio
* gnu/packages/databases.scm (sqlcipher): Update to 3.4.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-24gnu: mariadb: Update to 10.1.37 [security fixes].Marius Bakke
This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156, and CVE-2018-3251. See <https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details. * gnu/packages/databases.scm (mariadb): Update to 10.1.37.
2018-11-14gnu: databases: Return #t from all phases.Mark H Weaver
* gnu/packages/databases.scm (4store, go-gopkg.in-mgo.v2, mongodb) (sparql-query, tdb, sqlcipher, python-sqlparse, mongo-tools): Return #t from all phases, use invoke where appropriate, and remove vestigial plumbing.
2018-11-14Merge branch 'master' into core-updatesMarius Bakke
2018-11-11gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850].Leo Famulari
* gnu/packages/databases.scm (postgresql): Update to 10.6.
2018-11-11gnu: python-rq: Update to 0.12.0.Efraim Flashner
* gnu/packages/databases.scm (python-rq): Update to 0.12.0.
2018-11-11gnu: python-alembic: Update to 1.0.2.Efraim Flashner
* gnu/packages/databases.scm (python-alembic, python2-alembic): Update to 1.0.2.
2018-11-11gnu: mdbtools: Fetch sources from git.Ricardo Wurmus
* gnu/packages/databases.scm (mdbtools)[source]: Fetch from git.
2018-11-11gnu: mdbtools: Remove custom bootstrap phase.Ricardo Wurmus
* gnu/packages/databases.scm (mdbtools)[arguments]: Remove.
2018-11-09Merge branch 'master' into core-updatesMarius Bakke
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