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2018-02-16Merge branch 'master' into core-updatesMark H Weaver
2018-02-16gnu: perl-dbd-pg: Update to 3.7.4.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.7.4.
2018-02-09Merge branch 'master' into core-updatesMark H Weaver
2018-02-08gnu: postgresql: Update to 10.2 [CVE-2018-{1052,1053}].Leo Famulari
* gnu/packages/databases.scm (postgresql): Update to 10.2.
2018-02-03Merge branch 'master' into core-updatesMark H Weaver
2018-02-01gnu: Fix and improve the mongo-tools package.Christopher Baines
The hash of the source for this package is wrong. Most probably because the source was changed from a tarball to a git repository without updating the hash. Fixing this seems to break the check phase, so I rewrote that as well, making changes to the build and install phases as needed. * gnu/packages/databases.scm (mongo-tools)[source]: Update the hash value. [arguments]: Remove the different unpack path, as this isn't necessary when using the git repository as a source. Move the list of tools to make it accessible from multiple phases. Rewrite the build phase, getting it to install the tools in to the location the tests seem to expect to find them. Replace the check phase to run the tests for each tool individually. Add an install phase to install the tools, now that go install is not being run in the build phase. [native-inputs]: Add go-github.com-smartystreets-goconvey as a native-input as this is required for running the tests.
2018-02-01Merge branch 'master' into core-updatesMarius Bakke
2018-01-30gnu: Add mongo-tools.Christopher Baines
* gnu/packages/databases.scm (mongo-tools): New variable.
2018-01-30gnu: Add go-gopkg.in-mgo.v2.Christopher Baines
* gnu/packages/databases.scm (go-gopkg.in-mgo.v2): New variable.
2018-01-28gnu: Add sqlite-with-fts5.Mark H Weaver
* gnu/packages/databases.scm (sqlite-with-fts5): New variable.
2018-01-26Merge branch 'master' into core-updatesMark H Weaver
2018-01-26gnu: 4store: Update URI.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (4store)[source, home-page]: Update URI.
2018-01-19Merge branch 'master' into core-updatesMark H Weaver
2018-01-18gnu: mongodb: Fix indentation.Efraim Flashner
* gnu/packages/databases.scm (mongodb): Replace tabs with spaces.
2018-01-18gnu: mysql: Update to 5.7.21.Efraim Flashner
* gnu/packages/databases.scm (mysql): Update to 5.7.21.
2018-01-14gnu: Remove redundant wrapping from packages using ruby-build-system.Christopher Baines
Now that the build system does wrapping automatically, it can be removed from the packages that do it manually. * gnu/packages/databases.scm (es-dump-restore)[arguments]: Remove #:phases. * gnu/packages/ruby.scm (ruby-redcloth)[arguments]: Remove #:phases. (ruby-httpclient)[arguments]: Remove 'wrap-bin-httpclient from the modified phases.
2018-01-14guix: build: ruby-build-system: Install to the vendor directoryChristopher Baines
* guix/build/ruby-build-system.scm (install): Install gems to the vendor directory, rather than the GEM_HOME. The vendor directory does not include the version of ruby used to install the gem in the path, which makes it easier to add it to the GEM_PATH for all versions of ruby to use. (gem-home): Remove procedure. * gnu/packages/ruby.scm (ruby, ruby-2.1)[native-search-paths]: Switch to lib/ruby/vendor_ruby. (ruby-1.8)[native-search-paths]: Remove native-search-paths. (gem-directory): Remove procedure. (ruby-ansi, ruby-ae)[arguments]: Remove use of gem-directory. (ruby-metaclass, ruby-instantiator, ruby-introspection, ruby-mocha, ruby-nokogiri, ruby-minitest-tu-shim, ruby-redcloth)[arguments]: Remove use of gem-home. (ruby-git, ruby-httpclient)[arguments]: Remove use of GEM_HOME. * gnu/packages/databases.scm (es-dump-restore)[arguments]: Remove use of GEM_HOME.
2018-01-11Merge branch 'master' into core-updatesLeo Famulari
2018-01-08gnu: guile-wiredtiger: Update to 0.6.3.amirouche
* gnu/package/databases.scm (guile-wiredtiger): Update to 0.6.3. [arguments]: Enable tests; disable parallel tests; remove 'remove-bundled-dependencies' phase. [synopsis, description]: Improve them. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-12-31Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2017-12-27gnu: Run some tests in the mongodb package check phase.Christopher Baines
Previously the mongodb dbtests and unittests were only built, and not actually run. * gnu/packages/databases.scm (mongodb)[native-inputs]: Add python2-minimal, python2-pymongo and python2-pyyaml for running the resmoke.py program, and add tzdata as some tests fail without this. [arguments]: Run the tests through the resmoke.py script in the check phase, set TZDIR as a couple of tests seem to depend on this, add a comment about the resource requirements of the tests, as they require a large amount of disk space, and disable the async_stream_test, as it seems to hang.
2017-12-27gnu: Build wiredtiger with builtin compressors.Christopher Baines
WiredTiger is used by MongoDB, and it seems to require it to be built with builtin support for snappy compression. * gnu/packages/databases.scm (wiredtiger)[arguments]: Replace --enable-zlib and --enable-snappy with --with-builtins=snappy,zlib.
2017-12-26gnu: python-sqlalchemy-utils: Update to 0.32.21.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-sqlalchemy-utils): Update to 0.32.21.
2017-12-26gnu: python-sadisplay: Update to 0.4.8.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-sadisplay): Update to 0.4.8.
2017-12-26gnu: check, databases: Use HTTPS for bitbucket.org.Tobias Geerinckx-Rice
* gnu/packages/check.scm (python-pytest-capturelog)[home-page]: Likewise. * gnu/packages/databases.scm (python-alembic)[home-page]: Likewise.
2017-12-26gnu: python-redis: Update to 2.10.6.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-redis): Update to 2.10.6.
2017-12-26gnu: python-alembic: Update to 0.9.6.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-alembic): Update to 0.9.6.
2017-12-22gnu: Build wiredtiger with snappy support.Christopher Baines
This is probably necessary to get the MongoDB package in Guix to successfully use the Guix wiredtiger package, as MongoDB it uses wiredtiger with snappy by default. * gnu/packages/databases.scm (wiredtiger)[arguments]: Add --enable-snappy to #:configure-flags. [inputs]: Add snappy.
2017-12-22gnu: mariadb: Update to 10.1.29.Leo Famulari
* gnu/packages/databases.scm (mariadb): Update to 10.1.29.
2017-12-19Merge branch 'master' into core-updatesMarius Bakke
2017-12-10gnu: perl-sql-abstract: Update source uri.Efraim Flashner
* gnu/packages/databases.scm (perl-sql-abstract)[source]: Update source uri.
2017-12-07Merge branch 'master' into core-updatesMarius Bakke
2017-12-07gnu: perl-dbd-pg: Update to 3.7.0.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.7.0
2017-12-07gnu: perl-sql-abstract: Update to 1.84.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.84
2017-12-07gnu: perl-dbix-class-schema-loader: Update to 0.07047.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbix-class-schema-loader): Update to 0.07047
2017-12-07gnu: perl-dbi: Update to 1.637.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbi): Update to 1.637
2017-12-05Merge branch 'master' into core-updatesMarius Bakke
2017-11-30gnu: mongodb: Use scons-build-system.Arun Isaac
* gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
2017-11-26gnu: mongodb: Remove some bundled sources.Efraim Flashner
* gnu/packages/databases.scm (mongodb)[source]: Add snippet to remove some of the bundled sources. [input]: Remove unused boost input.
2017-11-26gnu: mongodb: Use system wiredtiger when available.Efraim Flashner
* gnu/packages/databases.scm (mongodb)[inputs]: Add wiredtiger on 64-bit systems. [arguments]: When using wiredtiger, use system wiredtiger.
2017-11-26gnu: mongodb: Build without wiredtiger on 32-bit systems.Efraim Flashner
* gnu/packages/databases.scm (mongodb)[arguments]: Add a configure-flag to build without wiredtiger support on 32-bit systems.
2017-11-25gnu: mongodb: Update to 3.4.10.Leo Famulari
* gnu/packages/databases.scm (mongodb): Update to 3.4.10.
2017-11-20gnu: Add python-pyodbc.Danny Milosavljevic
* gnu/packages/databases.scm (python-pyodbc, python2-pyodbc): New variables.
2017-11-19Merge branch 'master' into core-updatesMarius Bakke
2017-11-17gnu: Move database packages from python.scm to databases.scm.Ricardo Wurmus
* gnu/packages/python.scm (python-ccm, python2-ccm, python2-pysqlite, python-sqlalchemy, python2-sqlalchemy, python-sqlalchemy-utils, python2-sqlalchemy-utils, python-alembic, python2-alembic, python-pickleshare, python2-pickleshare, python-apsw, python2-apsw, python2-neo4j-driver, python2-py2neo, python-psycopg2, python2-psycopg2, python-sadisplay, python2-sadisplay, python-mysqlclient, python2-mysqlclient, python-hiredis, python2-hiredis, python-fakeredis, python2-fakeredis, python-redis, python2-redis, python-rq, python2-rq, python-trollius-redis, python2-trollius-redis, python-sqlparse, python2-sqlparse, python-sql, python2-sql): Move from here... * gnu/packages/databases.scm: ...to here. * gnu/packages/tryton.scm, gnu/packages/python-web.scm, gnu/packages/nutrition.scm, gnu/packages/medical.scm: Adjust accordingly.
2017-11-14gnu: Add guile-wiredtiger.Kristofer Buffington
* gnu/packages/databases.scm (guile-wiredtiger): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-13gnu: Move test packages from perl to perl-check.Ricardo Wurmus
* gnu/packages/perl.scm (perl-test2-bundle-extended, perl-test2-plugin-nowarnings, perl-test-base, perl-test-class, perl-test-class-most, perl-test-cleannamespaces, perl-test-command, perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep, perl-test-differences, perl-test-directory, perl-test-eol, perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist, perl-test-files, perl-test-harness, perl-test-leaktrace, perl-test-longstring, perl-test-manifest, perl-test-memory-cycle, perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs, perl-test-notabs, perl-test-nowarnings, perl-test-number-delta, perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires, perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint, perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn, perl-test-warnings, perl-test-without-module, perl-test-writevariants, perl-test-yaml, perl-test-trailingspace): Move variables to ... * gnu/packages/perl-check.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/admin.scm, gnu/packages/bioinformatics.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/glib.scm, gnu/packages/gnupg.scm, gnu/packages/image-viewers.scm, gnu/packages/language.scm, gnu/packages/networking.scm, gnu/packages/package-management.scm, gnu/packages/perl.scm, gnu/packages/terminals.scm, gnu/packages/tex.scm, gnu/packages/version-control.scm, gnu/packages/web.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm: Use perl-check module.
2017-11-10gnu: postgresql@9.6: Update to 9.6.6 [security fixes].Efraim Flashner
This fixes CVE-2017-12172, CVE-2017-15098, CVE-2017-15099. * gnu/packages/databases.scm (postgresql@9.6): Update to 9.6.6.
2017-11-10gnu: postgresql: Update to 10.1 [security fixes].Rutger Helling
Fixes CVE-2017-12172, CVE-2017-15098 and CVE-2017-15099. * gnu/packages/databases.scm (postgresql): Update to 10.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07gnu: Add r-rmysql.Ricardo Wurmus
* gnu/packages/databases.scm (r-rmysql): New variable.
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