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2019-12-18Merge branch 'master' into stagingMarius Bakke
2019-12-18gnu: libdbi-drivers: Adapt to multiple-output MariaDB.Marius Bakke
* gnu/packages/databases.scm (mariadb/fixed-install-db): New public variable. (libdbi-drivers)[inputs]: Add MARIADB:DEV and MARIADB:LIB. Remove MARIADB. [native-inputs]: Add MARIADB/FIXED-INSTALL-DB. [arguments]: Adjust accordingly.
2019-12-11gnu: MariaDB: Do not propagate OpenSSL.Marius Bakke
* gnu/packages/databases.scm (mariadb)[propagated-inputs]: Remove. [inputs]: Add OPENSSL-1.0. [arguments]: Add absolute references to OpenSSL in "post-install" phase.
2019-12-11gnu: postgresql@10: Update to 10.11.Marius Bakke
* gnu/packages/databases.scm (postgresql): Update to 10.11.
2019-12-11gnu: MariaDB: Update to 10.1.43.Marius Bakke
* gnu/packages/databases.scm (mariadb): Update to 10.1.43. [arguments]: Disable new test. [inputs]: Add LINUX-PAM.
2019-12-04Merge branch 'staging'Marius Bakke
2019-12-04gnu: python-pandas: Move to (gnu packages python-science).Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from here... * gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here. * gnu/packages/benchmark.scm, gnu/packages/databases.scm, gnu/packages/graph.scm, gnu/packages/parallel.scm, gnu/packages/serialization.scm: Import (gnu packages python-science).
2019-11-28Merge branch 'master' into stagingMarius Bakke
2019-11-26gnu: Add libdbi-drivers.Guillaume Le Vaillant
* gnu/packages/databases.scm (libdbi-drivers): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-26gnu: Add libdbi.Guillaume Le Vaillant
* gnu/packages/databases.scm (libdbi): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-15Merge branch 'master' into stagingMarius Bakke
2019-11-03databases: Fix build of virtuoso-ose.Roel Janssen
Virtuoso cannot be built with versions of OpenSSL >1.1.0. * gnu/packages/databases.scm (virtuoso-ose)[inputs]: Change OPENSSL to OPENSSL-1.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-11-01gnu: leveldb: Update home page.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (leveldb)[home-page]: Update.
2019-10-30Merge branch 'master' into stagingMarius Bakke
2019-10-29gnu: Go standard library 'x' packages: Consolidate.Leo Famulari
* gnu/packages/golang.scm (go-golang-org-x-text, go-golang-org-x-sys, go-golang-org-x-net, go-golang-org-x-time): New variables. (go-golang.org-x-crypto-ssh-terminal, go-golang-org-x-crypto-bcrypt, go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2, go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20, go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish, go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ed25519, go-golang-org-x-crypto-ripemd160, go-golang-org-x-crypto-blake2s, go-golang-org-x-crypto-sha3, go-golang-org-x-text-encoding, go-golang-org-x-text-transform, go-golang-org-x-text-unicode-norm, go-golang-org-x-net-ipv4, go-golang-org-x-net-bpf, go-golang-org-x-net-context, go-golang-org-x-net-internal-socks, go-golang-org-x-net-internal-socket, go-golang-org-x-net-internal-iana, go-golang-org-x-net-ipv6, go-golang-org-x-net-proxy, go-golang-org-x-sys-cpu, go-golang-org-x-sys-unix, go-golang-org-x-time-rate): Remove variables. (go-github-com-sirupsen-logrus, go-github-com-docker-distribution, go-github-com-libp2p-go-libp2p-crypto, go-github-com-multiformats-go-multihash, go-github-com-libp2p-go-libp2p-peer, go-github-com-libp2p-go-libp2p-metrics, go-github-com-multiformats-go-multiaddr, go-github-com-multiformats-go-multiaddr-net, go-github-com-mattn-go-isatty, go-github-com-gdamore-encoding, go-github-com-gdamore-tcell): Adjust accordingly. * gnu/packages/docker.scm (docker-libnetwork-cmd-proxy): Likewise. * gnu/packages/databases.scm (mongo-tools): Likewise. * gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-api, gx, gx-go): Likewise. * gnu/packages/web.scm (poussetaches): Likewise. * gnu/packages/terminals.scm (go-github-com-junegunn-fzf, go-github.com-howeyc-gopass): Likewise. (go-golang.org-x-crypto-ssh-terminal): Remove variable. * gnu/packages/syncthing.scm (syncthing, go-github-com-oschwald-geoip2-golang, go-github-com-oschwald-maxminddb-golang, go-github-com-syncthing-notify): Adjust accordingly. * gnu/packages/linux.scm (go-netlink): Likewise.
2019-10-23Merge branch 'master' into stagingMarius Bakke
2019-10-22gnu: mongodb: Fix build.Christopher Baines
* gnu/packages/databases.scm (mongodb)[inputs]: Use openssl 1, as 1.1. doesn't work. [arguments]: Change how a constant is defined in the tests to allow compiling with a newer version of GCC.
2019-10-21gnu: Add ephemeralpg.Christopher Baines
This is a general utility, but I'm particularly interested in using this to enable build time tests for the guix-data-service package. * gnu/packages/databases.scm (ephemeralpg): New variable.
2019-10-18Merge branch 'master' into stagingMarius Bakke
2019-10-16gnu: python-pylibmc: Update to 1.6.1.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pylibmc): Update to 1.6.1.
2019-10-15gnu: python-crate: Update to 0.23.2.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-crate): Update to 0.23.2.
2019-10-14gnu: sqitch: Remove perl-file-homedir input.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-file-homedir)[inputs]: Remove perl-file-homedir.
2019-10-14gnu: sqitch: Update to 1.0.0.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (sqitch): Update to 1.0.0.
2019-10-12gnu: mariadb: Split into out, lib and dev.Julien Lepiller
* gnu/packages/databases.scm (mariadb): Split into out, lib and dev. (perl-dbd-mysql, python-mysqlclient): Adjust dependencies. * gnu/packages/bioinformatics.scm (kentutils): Adjust dependencies. * gnu/packages/cran.scm (r-rmysql): Adjust dependencies. * gnu/packages/emacs-xyz.scm (emacs-emacsql): Adjust dependencies. * gnu/packages/kodi.scm (kodi): Adjust dependencies. * gnu/packages/qt.scm (qt, qtbase): Adjust dependencies. * gnu/packages/ruby.scm (ruby-mysql2): Adjust dependencies.
2019-10-08gnu: mariadb: Build with GCC 5 on ARMv7.Marius Bakke
Fixes <https://bugs.gnu.org/37605>. * gnu/packages/databases.scm (mariadb)[native-inputs]: Add GCC-5 when the current system is ARMv7.
2019-10-03gnu: mysql: Update to 5.7.27.Efraim Flashner
* gnu/packages/databases.scm (mysql): Update to 5.7.27. [native-inputs]: Add pkg-config. [inputs]: Add libtirpc, rpcsvc-proto.
2019-09-06Merge branch 'master' into core-updatesMark H Weaver
2019-09-05gnu: tdb: Update to 1.4.2.Marius Bakke
* gnu/packages/databases.scm (tdb): Update to 1.4.2.
2019-08-29Merge branch 'master' into core-updatesMark H Weaver
2019-08-29gnu: python-alembic: Update to 1.0.11.Marius Bakke
* gnu/packages/databases.scm (python-alembic): Update to 1.0.11.
2019-08-24gnu: python-pyodbc: Update to 4.0.27.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.27.
2019-08-22Merge branch 'master' into core-updatesMark H Weaver
2019-08-22gnu: python-redis: Update to 3.3.8.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-redis): Update to 3.3.8.
2019-08-13Merge branch 'master' into core-updatesMarius Bakke
2019-08-13Merge branch 'staging'Marius Bakke
2019-08-09gnu: 4store: Remove unneeded build phase.Efraim Flashner
* gnu/packages/databases.scm (4store)[arguments]: Remove unneeded 'generate-configure phase.
2019-08-09gnu: 4store: Don't use unstable tarball.Efraim Flashner
* gnu/packages/databases.scm (4store)[source]: Download using 'git-fetch'.
2019-08-08Merge branch 'master' into stagingMarius Bakke
2019-08-08gnu: postgresql@9: Update to 9.6.15 [fixes CVE-2019-10208].Marius Bakke
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.15.
2019-08-08gnu: postgresql@11: Update to 11.5 [fixes CVE-2019-10208, CVE-2019-10209].Marius Bakke
* gnu/packages/databases.scm (postgresql-11): Update to 11.5.
2019-08-08gnu: postgresql: Udpate to 10.10 [fixes CVE-2019-10208].Marius Bakke
* gnu/packages/databases.scm (postgresql): Update to 10.10.
2019-08-04gnu: mariadb: Update to 10.1.41 [security fixes].Marius Bakke
This fixes CVE-2019-2805, CVE-2019-2740, CVE-2019-2739, and CVE-2019-2737. * gnu/packages/databases.scm (mariadb): Update to 10.1.41. [source](uri): Update download URL.
2019-08-04gnu: MariaDB: Disable the TokuDB plugin.Marius Bakke
Fixes <https://bugs.gnu.org/35521>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages/databases.scm (mariadb)[arguments]: Pass "-DTOKUDB_OK" in <#:configure-flags>. Enable the "innodb_fts.crash_recovery" test, which likely failed because of the high I/O load induced by TokuDB. [inputs]: Remove SNAPPY. (cherry picked from commit bba7a77ed9ad826bcdc6d9b8a183d66a23229501)
2019-07-14gnu: MariaDB: Disable the TokuDB plugin.Marius Bakke
Fixes <https://bugs.gnu.org/35521>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages/databases.scm (mariadb)[arguments]: Pass "-DTOKUDB_OK" in <#:configure-flags>. Enable the "innodb_fts.crash_recovery" test, which likely failed because of the high I/O load induced by TokuDB. [inputs]: Remove SNAPPY.
2019-07-12Merge branch 'master' into core-updatesMarius Bakke
Conflicts: gnu/local.mk gnu/packages/python-xyz.scm gnu/packages/xml.scm guix/gexp.scm po/guix/POTFILES.in
2019-07-11Merge branch 'staging'Marius Bakke
2019-07-10gnu: postgresql@9: Update to 9.6.14 [fixes CVE-2018-1058, CVE-2019-9193]Efraim Flashner
* gnu/packages/databases.scm (postgresql@9): Update to 9.6.14.
2019-07-10Merge branch 'master' into stagingMarius Bakke
2019-07-07gnu: Add python-crate.Pierre Langlois
* gnu/packages/databases.scm (python-crate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-02Merge branch 'staging' into core-updatesMarius Bakke
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