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2017-11-30gnu: mongodb: Use scons-build-system.Arun Isaac
* gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
2017-11-26gnu: mongodb: Remove some bundled sources.Efraim Flashner
* gnu/packages/databases.scm (mongodb)[source]: Add snippet to remove some of the bundled sources. [input]: Remove unused boost input.
2017-11-26gnu: mongodb: Use system wiredtiger when available.Efraim Flashner
* gnu/packages/databases.scm (mongodb)[inputs]: Add wiredtiger on 64-bit systems. [arguments]: When using wiredtiger, use system wiredtiger.
2017-11-26gnu: mongodb: Build without wiredtiger on 32-bit systems.Efraim Flashner
* gnu/packages/databases.scm (mongodb)[arguments]: Add a configure-flag to build without wiredtiger support on 32-bit systems.
2017-11-25gnu: mongodb: Update to 3.4.10.Leo Famulari
* gnu/packages/databases.scm (mongodb): Update to 3.4.10.
2017-11-20gnu: Add python-pyodbc.Danny Milosavljevic
* gnu/packages/databases.scm (python-pyodbc, python2-pyodbc): New variables.
2017-11-17gnu: Move database packages from python.scm to databases.scm.Ricardo Wurmus
* gnu/packages/python.scm (python-ccm, python2-ccm, python2-pysqlite, python-sqlalchemy, python2-sqlalchemy, python-sqlalchemy-utils, python2-sqlalchemy-utils, python-alembic, python2-alembic, python-pickleshare, python2-pickleshare, python-apsw, python2-apsw, python2-neo4j-driver, python2-py2neo, python-psycopg2, python2-psycopg2, python-sadisplay, python2-sadisplay, python-mysqlclient, python2-mysqlclient, python-hiredis, python2-hiredis, python-fakeredis, python2-fakeredis, python-redis, python2-redis, python-rq, python2-rq, python-trollius-redis, python2-trollius-redis, python-sqlparse, python2-sqlparse, python-sql, python2-sql): Move from here... * gnu/packages/databases.scm: ...to here. * gnu/packages/tryton.scm, gnu/packages/python-web.scm, gnu/packages/nutrition.scm, gnu/packages/medical.scm: Adjust accordingly.
2017-11-14gnu: Add guile-wiredtiger.Kristofer Buffington
* gnu/packages/databases.scm (guile-wiredtiger): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-13gnu: Move test packages from perl to perl-check.Ricardo Wurmus
* gnu/packages/perl.scm (perl-test2-bundle-extended, perl-test2-plugin-nowarnings, perl-test-base, perl-test-class, perl-test-class-most, perl-test-cleannamespaces, perl-test-command, perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep, perl-test-differences, perl-test-directory, perl-test-eol, perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist, perl-test-files, perl-test-harness, perl-test-leaktrace, perl-test-longstring, perl-test-manifest, perl-test-memory-cycle, perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs, perl-test-notabs, perl-test-nowarnings, perl-test-number-delta, perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires, perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint, perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn, perl-test-warnings, perl-test-without-module, perl-test-writevariants, perl-test-yaml, perl-test-trailingspace): Move variables to ... * gnu/packages/perl-check.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/admin.scm, gnu/packages/bioinformatics.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/glib.scm, gnu/packages/gnupg.scm, gnu/packages/image-viewers.scm, gnu/packages/language.scm, gnu/packages/networking.scm, gnu/packages/package-management.scm, gnu/packages/perl.scm, gnu/packages/terminals.scm, gnu/packages/tex.scm, gnu/packages/version-control.scm, gnu/packages/web.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm: Use perl-check module.
2017-11-10gnu: postgresql@9.6: Update to 9.6.6 [security fixes].Efraim Flashner
This fixes CVE-2017-12172, CVE-2017-15098, CVE-2017-15099. * gnu/packages/databases.scm (postgresql@9.6): Update to 9.6.6.
2017-11-10gnu: postgresql: Update to 10.1 [security fixes].Rutger Helling
Fixes CVE-2017-12172, CVE-2017-15098 and CVE-2017-15099. * gnu/packages/databases.scm (postgresql): Update to 10.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07gnu: Add r-rmysql.Ricardo Wurmus
* gnu/packages/databases.scm (r-rmysql): New variable.
2017-11-05gnu: redis: Update to 4.0.2.Marius Bakke
* gnu/packages/databases.scm (redis): Update to 4.0.2.
2017-10-25gnu: Add sqlite-with-fts3.Ricardo Wurmus
* gnu/packages/databases.scm (sqlite-with-fts3): New variable. Co-authored-by: Pierre Langlois <pierre.langlois@gmx.com>
2017-10-23gnu: python-lmdb: Update to 0.93.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-lmdb): Update to 0.93.
2017-10-23gnu: python-peewee: Update to 2.10.2.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-peewee): Update to 2.10.2.
2017-10-20gnu: mysql: Update to 5.7.20.Leo Famulari
* gnu/packages/databases.scm (mysql): Update to 5.7.20.
2017-10-12gnu: Add postgresql@9.6.Efraim Flashner
* gnu/packages/databases.scm (postgresql@9.6): New variable.
2017-10-10Merge branch 'staging'Marius Bakke
2017-10-10gnu: postgresql: Update to 10.0.Rutger Helling
* gnu/packages/databases.scm (postgresql): Update to 10.0. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-10-07Merge branch 'master' into stagingMarius Bakke
2017-10-06gnu: Add mongodb.Christopher Baines
* gnu/packages/databases.scm (mongodb): New variable.
2017-10-05Merge branch 'master' into stagingMarius Bakke
2017-10-04gnu: virtuoso-ose: Limit to 64-bit platforms.Efraim Flashner
* gnu/packages/databases.scm (virtuoso-ose)[supported-systems]: New field.
2017-10-03gnu: Add virtuoso-ose.Roel Janssen
* gnu/packages/databases.scm (virtuoso-ose): New variable.
2017-09-30gnu: Add ruby-es-dump-restore.Christopher Baines
* gnu/packages/databases.scm (es-dump-restore): New variable.
2017-09-21gnu: bdb: Update to 6.2.32.Marius Bakke
* gnu/packages/databases.scm (bdb): Update to 6.2.32.
2017-09-20gnu: Use 'modify-phases' syntax.Kei Kebreau
* gnu/packages/admin.scm (mingetty, clusterssh, wpa-supplicant-minimal, wpa-supplicant, wakelan, acpica, tree, direvent, dstat)[arguments]: Use 'modify-phases' syntax. * gnu/packages/algebra.scm (arb)[arguments]: Likewise. * gnu/packages/apr.scm (apr-util)[arguments]: Likewise. * gnu/packages/audio.scm (clalsadrv, fluidsynth, faad2, lv2-mda-piano, lv2-mda-epiano, timidity++, vamp, soundtouch, portaudio, rsound, zita-convolver, zita-alsa-pcmi)[arguments]: Likewise. * gnu/packages/backup.scm (rdup, btar)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (bedops, bwa, crossmap, express, flexbar, grit, hisat, ngs-sdk, subread)[arguments]: Likewise. * gnu/packages/bittorrent.scm (transmission)[arguments]: Likewise. * gnu/packages/cdrom.scm (cd-discid)[arguments]: Likewise. * gnu/packages/compression.scm (sharutils)[arguments]: Likewise. * gnu/packages/conky.scm (conky)[arguments]: Likewise. * gnu/packages/databases.scm (bdb, bdb-5.3)[arguments]: Likewise. * gnu/packages/debug.scm (delta, c-reduce)[arguments]: Likewise. * gnu/packages/display-managers.scm (slim)[arguments]: Likewise. * gnu/packages/dns.scm (dnsmasq)[arguments]: Likewise. * gnu/packages/emacs.scm (geiser, emacs-wget, bbdb)[arguments]: Likewise. * gnu/packages/engineering.scm (pcb)[arguments]: Likewise. * gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Likewise. * gnu/packages/flashing-tools.scm (flashrom)[arguments]: Likewise. * gnu/packages/fltk.scm (fltk)[arguments]: Likewise. * gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Likewise. * gnu/packages/gd.scm (perl-gd)[arguments]: Likewise. * gnu/packages/gkrellm.scm (gkrellm)[arguments]: Likewise. * gnu/packages/glib.scm (glibmm)[arguments]: Likewise. * gnu/packages/gl.scm (glew)[arguments]: Likewise. * gnu/packages/gnome.scm (icon-naming-utils, orbit2, libbonobo, gnome-vfs, libgnome, libbonoboui, goffice-0.8, dconf)[arguments]: Likewise. * gnu/packages/gprolog.scm (gprolog)[arguments]: Likewise. * gnu/packages/gps.scm (gpscorrelate)[arguments]: Likewise. * gnu/packages/graphics.scm (agg)[arguments]: Likewise. * gnu/packages/gtk.scm (ganv, girara, gtksourceview-2, guile-present, python2-pycairo)[arguments]: Likewise. * gnu/packages/guile.scm (guile-1.8)[arguments]: Likewise. * gnu/packages/guile-wm.scm (guile-wm)[arguments]: Likewise. * gnu/packages/hugs.scm (hugs)[arguments]: Likewise. * gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal) [arguments]: Likewise. * gnu/packages/image-viewers.scm (feh, sxiv)[arguments]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[arguments]: Likewise. * gnu/packages/linux.scm (bridge-utils, iw, fuse, unionfs-fuse/static, lm-sensors, i2c-tools, xsensors, perf, mdadm, libaio, module-init-tools) [arguments]: Likewise. * gnu/packages/lisp.scm (ccl)[arguments]: Likewise. * gnu/packages/lout.scm (lout)[arguments]: Likewise. * gnu/packages/lua.scm (luajit)[arguments]: Likewise. * gnu/packages/machine-learning.scm (shogun)[arguments]: Likewise. * gnu/packages/mail.scm (exim)[arguments]: Likewise. * gnu/packages/man.scm (man-pages, txt2man)[arguments]: Likewise. * gnu/packages/maths.scm (lapack, superlu-dist, openlibm, openspecfun) [arguments]: Likewise. * gnu/packages/messaging.scm (bitlbee)[arguments]: Likewise. * gnu/packages/mp3.scm (libmad, id3lib, mp3info)[arguments]: Likewise. * gnu/packages/music.scm (solfege)[arguments]: Likewise. * gnu/packages/noweb.scm (noweb)[arguments]: Likewise. * gnu/packages/patchutils.scm (patchutils, quilt, colordiff)[arguments]: Likewise. * gnu/packages/pdf.scm (xpdf, zathura-cb, zathura-ps, zathura-djvu, zathura-pdf-poppler, zathura, podofo, fbida)[arguments]: Likewise. * gnu/packages/perl.scm (perl-file-list, perl-test-harness)[arguments]: Likewise. * gnu/packages/photo.scm (gphoto2)[arguments]: Likewise. * gnu/packages/popt.scm (popt)[arguments]: Likewise. * gnu/packages/pretty-print.scm (source-highlight, astyle)[arguments]: Likewise. * gnu/packages/pumpio.scm (pumpa)[arguments]: Likewise. * gnu/packages/python.scm (python-passlib, python-pycrypto, python2-empy, python-sqlalchemy, python-docopt)[arguments]: Likewise. * gnu/packages/rdf.scm (lrdf)[arguments]: Likewise. * gnu/packages/regex.scm (tre)[arguments]: Likewise. * gnu/packages/rrdtool.scm (rrdtool)[arguments]: Likewise. * gnu/packages/ruby.scm (ruby-2.1, ruby-1.8)[arguments]: Likewise. * gnu/packages/sawfish.scm (sawfish)[arguments]: Likewise. * gnu/packages/scheme.scm (racket)[arguments]: Likewise. * gnu/packages/sdl.scm (guile-sdl)[arguments]: Likewise. * gnu/packages/serveez.scm (serveez)[arguments]: Likewise. * gnu/packages/skribilo.scm (skribilo)[arguments]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[arguments]: Likewise. * gnu/packages/suckless.scm (dmenu, slock)[arguments]: Likewise. * gnu/packages/tcl.scm (expect)[arguments]: Likewise. * gnu/packages/telephony.scm (commoncpp)[arguments]: Likewise. * gnu/packages/textutils.scm (recode, libgtextutils)[arguments]: Likewise. * gnu/packages/time.scm (time)[arguments]: Likewise. * gnu/packages/tor.scm (privoxy)[arguments]: Likewise. * gnu/packages/uucp.scm (uucp)[arguments]: Likewise. * gnu/packages/video.scm (libdvdnav-4)[arguments]: Likewise. * gnu/packages/web-browsers.scm (lynx)[arguments]: Likewise. * gnu/packages/web.scm (tinyproxy)[arguments]: Likewise. * gnu/packages/wicd.scm (wicd)[arguments]: Likewise. * gnu/packages/wm.scm (bspwm)[arguments]: Likewise. * gnu/packages/xdisorg.scm (sxhkd, xcape)[arguments]: Likewise. * gnu/packages/xfce.scm (xfconf)[arguments]: Likewise. * gnu/packages/xfig.scm (transfig)[arguments]: Likewise. * gnu/packages/xorg.scm (imake)[arguments]: Likewise.
2017-09-17gnu: python-orator: Move to (gnu packages databases).Ben Woodcroft
* gnu/packages/python.scm: Remove (gnu packages time) import. (python-orator, python2-orator): Move from here ... * gnu/packages/databases.scm: ... to here.
2017-09-04gnu: Put autoconf-related phases immediately after the 'unpack phase.Kei Kebreau
* gnu/packages/audio.scm (audacity, rtmidi)[arguments]: Correct phases accordingly. * gnu/packages/bioinformatics.scm (mash, seek, vsearch, emboss, htslib-for-sambamba)[arguments]: Likewise. * gnu/packages/ci.scm (cuirass)[arguments]: Likewise. * gnu/packages/compression.scm (minizip, xdelta)[arguments]: Likewise. * gnu/packages/cpp.scm (libzen)[arguments]: Likewise. * gnu/packages/crypto.scm (opendht)[arguments]: Likewise. * gnu/packages/databases.scm (4store, mdbtools)[arguments]: Likewise. * gnu/packages/debug.scm (stress-make)[arguments]: Likewise. * gnu/packages/dns.scm (dnscrypt-proxy, dnscrypt-wrapper)[arguments]: Likewise. * gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Likewise. * gnu/packages/embedded.scm (libjaylink, openocd)[arguments]: Likewise. * gnu/packages/engineering.scm (gerbv)[arguments]: Likewise. * gnu/packages/erlang.scm (erlang)[arguments]: Likewise. * gnu/packages/ftp.scm (weex)[arguments]: Likewise. * gnu/packages/gnome.scm (dia)[arguments]: Likewise. * gnu/packages/gnunet.scm (gnurl, guile-gnunet)[arguments]: Likewise. * gnu/packages/gtk.scm (guile-rsvg, graphene)[arguments]: Likewise. * gnu/packages/guile.scm (guildhall, guile-ics, guile-sqlite3)[arguments]: Likewise. * gnu/packages/ibus.scm (ibus-libpinyin)[arguments]: Likewise. * gnu/packages/irc.scm (weechat)[arguments]: Likewise. * gnu/packages/java.scm (classpath-devel)[arguments]: Likewise. * gnu/packages/libreoffice.scm (libetonyek)[arguments]: Likewise. * gnu/packages/libusb.scm (hidapi)[arguments]: Likewise. * gnu/packages/linux.scm (gpm)[arguments]: Likewise. * gnu/packages/logging.scm (glog)[arguments]: Likewise. * gnu/packages/machine-learning.scm (ghmm)[arguments]: Likewise. * gnu/packages/mail.scm (dovecot-trees, dovecot-libsodium-plugin, esmtp) [arguments]: Likewise. * gnu/packages/messaging.scm (freetalk, libmesode, libstrophe)[arguments]: Likewise. * gnu/packages/microcom.scm (microcom)[arguments]: Likewise. * gnu/packages/ocaml.scm (ocaml-ssl)[arguments]: Likewise. * gnu/packages/parallel.scm (slurm)[arguments]: Likewise. * gnu/packages/pdf.scm (libharu)[arguments]: Likewise. * gnu/packages/samba.scm (cifs-utils)[arguments]: Likewise. * gnu/packages/serialization.scm (msgpack)[arguments]: Likewise. * gnu/packages/shells.scm (scsh)[arguments]: Likewise. * gnu/packages/telephony.scm (libiax2)[arguments]: Likewise. * gnu/packages/textutils.scm (dotconf)[arguments]: Likewise. * gnu/packages/version-control.scm (findnewest)[arguments]: Likewise. * gnu/packages/video.scm (libmediainfo, mediainfo)[arguments]: Likewise.
2017-09-01gnu: mysql: Enable tests on aarch64.Efraim Flashner
* gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling the tests on aarch64-linux.
2017-08-31gnu: postgresql: Update to 9.6.5.Marius Bakke
* gnu/packages/databases.scm (postgresql): Update to 9.6.5. Release-notes: https://www.postgresql.org/docs/9.6/static/release-9-6-5.html
2017-08-27gnu: tdb: Update to 1.3.15.Marius Bakke
* gnu/packages/databases.scm (tdb): Update to 1.3.15.
2017-08-25gnu: perl: Add more missing dependencies on Module::Install.Marius Bakke
* gnu/packages/databases.scm (perl-dbix-class, perl-dbix-class-cursor-cached, perl-dbix-class-introspectablem2m, perl-dbix-class-schema-loader)[native-inputs]: Add PERL-MODULE-INSTALL. * gnu/packages/web.scm (perl-catalyst-action-renderview, perl-catalyst-action-rest, perl-catalyst-authentication-store-dbix-class, perl-catalyst-component-instancepercontext, perl-catalyst-model-dbic-schema, perl-catalyst-plugin-authentication, perl-catalyst-plugin-authorization-roles, perl-catalyst-plugin-configloader, perl-catalyst-plugin-session, perl-catalyst-plugin-session-state-cookie, perl-catalyst-plugin-stacktrace, perl-catalyst-plugin-static-simple, perl-catalyst-traitfor-request-proxybase, perl-catalyst-view-download, perl-catalyst-view-json, perl-catalystx-script-server-starman, perl-test-www-mechanize, perl-test-www-mechanize-catalyst)[native-inputs]: Likewise. * gnu/packages/xorg.scm (perl-x11-xcb)[native-inputs]: Likewise.
2017-08-21Merge branch 'master' into core-updatesMarius Bakke
2017-08-17gnu: mariadb: Update to 10.1.26 [fixes CVE-2017-{3636,3641,3653}].Alex Vong
* gnu/packages/databases.scm (mariadb): Update to 10.1.26. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-11Merge branch 'master' into core-updatesMark H Weaver
2017-08-10gnu: postgresql: Update to 9.6.4 [fixes CVE-2017-{7546,7547,7548}].Marius Bakke
See <https://www.postgresql.org/about/news/1772/> for more information. * gnu/packages/databases.scm (postgresql): Update to 9.6.4.
2017-08-01Merge branch 'master' into core-updatesMarius Bakke
2017-07-30gnu: perl: Add missing dependencies on Module::Install.Marius Bakke
Perl 5.26 and later does not provide this module. * gnu/packages/databases.scm (perl-sql-abstract)[native-inputs]: Add PERL-MODULE-INSTALL. * gnu/packages/perl.scm (perl-moosex-emulate-class-accessor-fast, perl-file-zglob, perl-object-signature, perl-test-utf8, perl-time-duration, perl-benchmark-timer, perl-class-accessor-grouped, perl-class-c3-componentised, perl-term-encoding)[native-inputs]: Likewise. * gnu/packages/web.scm (perl-http-parser-xs, perl-uri-template, perl-www-curl)[native-inputs]: Likewise. * gnu/packages/xml.scm (perl-xml-atom)[native-inputs]: Likewise.
2017-07-30gnu: Add memcached.Christopher Baines
* gnu/packages/databases.scm (memcached): New variable.
2017-07-28gnu: redis: Update to 4.0.1.Ben Woodcroft
* gnu/packages/databases.scm (redis): Update to 4.0.1.
2017-07-28gnu: redis: Update to 4.0.0.Ben Woodcroft
* gnu/packages/databases.scm (redis): Update to 4.0.0.
2017-07-28Merge branch 'master' into core-updatesMarius Bakke
2017-07-25gnu: perl-dbd-mysql: Fix CVE-2017-10788.Kei Kebreau
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
2017-07-23Merge branch 'master' into core-updatesLeo Famulari
2017-07-23gnu: tdb: Update to 1.3.14.Marius Bakke
* gnu/packages/databases.scm (tdb): Update to 1.3.14.
2017-07-23Merge branch 'master' into core-updatesLeo Famulari
2017-07-21gnu: mysql: Update to 5.7.19.Leo Famulari
* gnu/packages/databases.scm (mysql): Update to 5.7.19.
2017-07-10Merge branch 'master' into core-updatesLeo Famulari
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