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2018-10-03gnu: recutils: Adjust Gnulib to libc 2.28.Ludovic Courtès
Fixes <https://bugs.gnu.org/32776>. * gnu/packages/databases.scm (recutils)[modules, snippet]: New fields.
2018-09-28gnu: python-fakeredis: Edit description.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-fakeredis)[description]: Fix (upstream) typo. Get carried away.
2018-09-26Merge branch 'master' into core-updatesMarius Bakke
2018-09-21gnu: perl-dbd-mysql: Update to 4.048.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
2018-09-13Merge branch 'master' into core-updatesLeo Famulari
2018-09-11gnu: perl-dbd-mysql: Update to 4.047.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047. [arguments]: Add 'skip-library-detection' phase.
2018-09-09gnu: mariadb: Move unbundle substitutions to source snippet.Marius Bakke
* gnu/packages/databases.scm (mariadb)[source](snippet): Add two substitutions from ... [arguments]: The 'unbundle' phase here. Rename to 'fix-pcre-detection.
2018-09-09gnu: mariadb: Update to 10.1.36.Marius Bakke
* gnu/packages/databases.scm (mariadb): Update to 10.1.36. [arguments]: Disable one new test.
2018-08-25Merge branch 'staging' into core-updatesMarius Bakke
2018-08-25Merge branch 'master' into stagingMarius Bakke
2018-08-24gnu: boost: Move 1.59.0 definition to boost.scm.Ludovic Courtès
Fixes a regression introduced in commit 7cbf06d8c2935abfc6c688cf3f9b99e0e5393960 where the top-level code of these two modules would depend on each other, leading to "boost: unbound variable" kind of errors in some circumstances. * gnu/packages/databases.scm (boost-for-mysql): Move to... * gnu/packages/boost.scm (boost-for-mysql): ... here. Make public and add 'properties' field.
2018-08-22gnu: perl-dbd-mysql: Update to 4.046.Leo Famulari
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046. [source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'. * gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-22Merge branch 'master' into stagingMarius Bakke
2018-08-22gnu: Remove GCC ICE workarounds.Marius Bakke
* gnu/packages/patches/doxygen-gcc-ice.patch, gnu/packages/patches/mariadb-gcc-ice.patch, gnu/packages/patches/perf-gcc-ice.patch: Delete files * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/databases.scm (mariadb)[source](patches): Likewise. * gnu/packages/linux.scm (perf)[source](patches): Likewise. * gnu/packages/documentation.scm (doxygen)[inputs, arguments]: Likewise.
2018-08-22gnu: mariadb: Remove huge mysql_embedded executable.Marius Bakke
* gnu/packages/databases.scm (mariadb)[arguments]: Adjust deletion regex.
2018-08-22gnu: mariadb: Propagate OpenSSL.Marius Bakke
* gnu/packages/databases.scm (mariadb)[inputs]: Move OPENSSL ... [propagated-inputs]: ... here. (r-rmysql)[inputs]: Remove OPENSSL.
2018-08-22gnu: Add sqlcrush.Tobias Geerinckx-Rice
* gnu/packages/databases.smc (sqlcrush): New public variable.
2018-08-22gnu: Add python-pymysql.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New public variables.
2018-08-21gnu: gdbm: Update to 1.18.Marius Bakke
* gnu/packages/databases.scm (gdbm): Update to 1.18.
2018-08-21gnu: python-sqlalchemy: Update to 1.2.11.Marius Bakke
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.2.11.
2018-08-21gnu: python-sqlalchemy: Use 'invoke'.Marius Bakke
* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Use INVOKE instead of SYSTEM*.
2018-08-21gnu: unixodbc: Update to 2.3.7.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (unixodbc): Update to 2.3.7.
2018-08-20gnu: mysql: Update to 5.7.23.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (mysql): Update to 5.7.23.
2018-08-20gnu: mysql: Fix build.Tobias Geerinckx-Rice
MySQL demands boost@1.59.0, and lying about it no longer works: sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’: sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &) ^ [...] * gnu/packages/databases.scm (boost-for-mysql): New variable. (mysql)[inputs]: Use that instead of the regular boost. [arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
2018-08-20gnu: python-pyodbc: Update to 4.0.24.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
2018-08-20gnu: python-mysqlclient: Update to 1.3.13.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
2018-08-20gnu: perl-dbd-sqlite: Update to 1.58.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.58.
2018-08-20gnu: Update virtuoso-ose to 7.2.5.Roel Janssen
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.5.
2018-08-16Merge branch 'master' into stagingMarius Bakke
2018-08-16gnu: r-rmysql: Add missing dependency on OpenSSL.Marius Bakke
* gnu/packages/databases.scm (r-rmysql)[inputs]: Add OPENSSL.
2018-08-16gnu: mysql: Use HTTPS.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (mysql)[source, home-page]: Use HTTPS.
2018-08-15gnu: clementine: Fix creating initial database.Pierre Langlois
It seems a recent version of sqlite broke Clementine's first startup. It turns out we can patch clementine to fix the problem instead of providing a different sqlite package: <https://github.com/clementine-player/Clementine/pull/5669> * gnu/packages/databases.scm (sqlite-with-fts3): Remove. * gnu/packages/music.scm (clementine)[inputs]: Replace sqlite-with-fts3 with sqlite. [source]: Add clementine-fix-sqlite.patch. * gnu/packages/patches/clementine-fix-sqlite.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-15gnu: perl-db-file: Update to 1.842.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-db-file): Update to 1.842.
2018-08-15gnu: memcached: Fix typos in description.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (memcached)[synopsis, description]: Hyphenate.
2018-08-14gnu: memcached: Update to 1.5.10.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (memcached): Update to 1.5.10.
2018-08-13Merge branch 'staging' into core-updatesRicardo Wurmus
2018-08-11Migrate search.cpan.org home pages to metacpan.org.Tobias Geerinckx-Rice
The venerable search.cpan.org has retired[0]. [0]: https://log.perl.org/2018/05/goodbye-search-dot-cpan-dot-org.html * guix/import/cpan.scm (cpan-home): Generate metacpan.org home page URIs. Update all previously generated ones in (gnu packages) to their canonical new homes.
2018-08-10gnu: mariadb: Update to 10.1.35 [security fixes].Marius Bakke
This release fixes CVE-2018-3058, CVE-2018-3063, CVE-2018-3064 and CVE-2018-3066. See <https://mariadb.com/kb/en/library/mariadb-10135-release-notes/> for details. * gnu/packages/databases.scm (mariadb): Update to 10.1.35.
2018-08-10gnu: postgresql: Update to 10.5 [fixes CVE-2018-10915, CVE-2018-10925].Marius Bakke
* gnu/packages/databases.scm (postgresql): Update to 10.5.
2018-08-07gnu: mariadb: Remove test which fails on armhf-linux.Efraim Flashner
* gnu/packages/databases.scm (mariadb)[arguments]: Disable test 'mroonga/storage.index_read_multiple_double'.
2018-08-07gnu: mariadb: Further increase test timeouts.Marius Bakke
* gnu/packages/databases.scm (mariadb)[arguments]: Allow 40 minutes for single tests, and 600 in total.
2018-08-07gnu: mariadb: Adjust to test failures on Hydra.Marius Bakke
* gnu/packages/patches/mariadb-client-test-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/databases.scm (mariadb)[source](patches): Add it. [arguments]: Increase retry count and test timeout. Disable test main.myisampack.
2018-08-01Merge branch 'master' into core-updatesMarius Bakke
2018-07-30Merge branch 'master' into stagingMarius Bakke
2018-07-29gnu: python2-psycopg2: Update to 2.7.5.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python2-psycopg2): Update to 2.7.5.
2018-07-28gnu: mariadb: Move GCC ICE patch to the usual location.Marius Bakke
* gnu/packages/databases.scm (mariadb)[source](patches): New field. [arguments]: Don't disable semisync plugin. [inputs]: Remove 'mariadb-gcc-ice.patch'.
2018-07-28Merge branch 'master' into stagingMarius Bakke
2018-07-28gnu: mariadb: Work around GCC ICE on armhf-linux.Ludovic Courtès
* gnu/packages/patches/mariadb-gcc-ice.patch: New file. * gnu/packages/databases.scm (mariadb)[arguments]: Conditionally add 'apply-patch' phase. [native-inputs]: Conditionally add "gcc-ice-patch" input.
2018-07-26gnu: mariadb: Delete test files and static libraries.Marius Bakke
* gnu/packages/databases.scm (mariadb)[arguments]: Adapt 'post-install' phase to purge static archives and test executables.
2018-07-26gnu: mariadb: Remove some bundled libraries.Marius Bakke
* gnu/packages/databases.scm (mariadb)[source](snippet, modules): New fields. [arguments]: Add explicit #:configure-flags for system libraries. Add 'unbundle' phase. Remove 'pre-configure' phase. [inputs]: Add SNAPPY and XZ.
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