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* gnu/packages/java.scm (icedtea-6)[arguments]<#:phases>: Remove special
handling of "hotspot-src" input during "unpack" phase.
[native-inputs]: Remove patch to "hotspot-src".
* gnu/packages/patches/icedtea-6-hotspot-gcc-segfault-workaround.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/java.scm (icedtea-6)[arguments]<#:configure-flags>: Supply
parameter to "--with-parallel-jobs".
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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This is a followup to 593096355501dfd76c2e92b1fbd87f940ab1d1f2.
* gnu/packages/maths.scm (hdf5): Change to HDF5-1.10.
(hdf-java, hdf-eos5, h5check, netcdf, matio)[inputs]: Use HDF5-1.8.
* gnu/packages/java.scm (java-cisd-jhdf5)[inputs]: Likewise.
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* gnu/packages/java.scm (java-javaparser): New variable.
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* gnu/packages/java.scm (java-tunnelvisionlabs-antlr4): New variable.
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* gnu/packages/java.scm (java-tunnelvisionlabs-antlr4-runtime): New
variable.
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* gnu/packages/java.scm
(java-tunnelvisionlabs-antlr4-runtime-annotations): New variable.
* gnu/packages/patches/java-tunnelvisionlabs-antlr-code-too-large.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/java.scm (antlr4-4.1): New variable.
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* gnu/packages/java.scm (java-antlr4-runtime-4.1): New variable.
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* gnu/packages/java.scm (java-asm-util-8): New variable.
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* gnu/packages/java.scm (java-asm-analysis-8): New variable.
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* gnu/packages/java.scm (java-asm-tree-8): New variable.
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* gnu/packages/java.scm (java-asm-8): New variable.
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* gnu/packages/java.scm (ant): Update to 1.9.15.
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* gnu/packages/java.scm (ant/java8): Update to 1.10.8.
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* gnu/packages/audio.scm (caps-plugins-lv2)[synopsis]: Fix typo.
* gnu/packages/bioconductor.scm (r-karyoploter, r-anota, r-gcrma)
(r-bigmemoryextras)[description]: Likewise.
* gnu/packages/cran.scm (r-geometry)[synopsis]: Likewise.
(r-stringdist, r-patchwork, r-depth, r-tea)[description]: Likewise.
* gnu/packages/crates-io.scm (rust-assert-fs-0.11, rust-notify-4)
(rust-tokio-fs-0.1)[synopsis, description]: Likewise.
(rust-blas-sys-0.7)[description]: Likewise.
(rust-fs-extra-1.1, rust-xattr-0.2)[synopsis]: Likewise.
* gnu/packages/databases.scm (perl-mysql-config)[description]: Likewise.
* gnu/packages/disk.scm (hddtemp)[description]: Likewise.
* gnu/packages/django.scm (python-djangorestframework)[description]:
Likewise.
* gnu/packages/documentation.scm (doc++)[description]: Likewise.
* gnu/packages/emacs-xyz.scm (emacs-kakoune, emacs-pyim-basedict, eless)
(emacs-scpaste)[description]: Likewise.
* gnu/packages/file-systems.scm (dbxfs)[description]: Likewise.
* gnu/packages/finance.scm (python-stdnum)[description]: Likewise.
* gnu/packages/fontutils.scm (woff2)[description]: Likewise.
* gnu/packages/games.scm (openttd-opengfx)[description]: Likewise.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-topicons-redux)
[description]: Likewise.
* gnu/packages/gnome.scm (libgrss)[description]: Likewise.
* gnu/packages/golang.scm (go-github-com-mitchellh-reflectwalk)
[description]: Likewise.
(go-github-com-go-git-go-billy)[synopsis, description]: Likewise.
* gnu/packages/haskell-check.scm (ghc-inspection-testing)[description]:
Likewise.
* gnu/packages/haskell-web.scm (ghc-yesod-form)[description]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-hex)[description]: Likewise.
* gnu/packages/hyperledger.scm (hyperledger-iroha-ed25519)[description]:
Likewise.
* gnu/packages/java.scm (java-mail)[synopsis]: Likewise.
(java-native-access-platform)[description]: Likewise.
* gnu/packages/kde-frameworks.scm (kactivities-stats)[description]:
Likewise.
* gnu/packages/kde-utils.scm (krusader)[description]: Likewise.
* gnu/packages/language.scm (praat)[description]: Likewise.
* gnu/packages/linux.scm (light)[description]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.defclass-star)[description]:
Likewise.
* gnu/packages/mail.scm (dovecot-trees, sieve-connect)[description]:
Likewise.
* gnu/packages/ocaml.scm (ocaml-opam-file-format, ocaml-cppo)
(ocaml4.07-ppx-variants-conv)[description]: Likewise.
* gnu/packages/perl.scm (perl-convert-binhex)[description]: Likewise.
* gnu/packages/python-crypto.scm (python-ecdsa)[description]: Likewise.
* gnu/packages/python-web.scm (python-html5lib)[synopsis, description]:
Likewise.
(python-venusian)[synopsis]: Likewise.
* gnu/packages/python-xyz.scm (python-readlike, python-gssapi)
(python-flufl-i18n)[description]: Likewise.
(python-pox, python-watchdog, python-xattr)[synopsis, description]:
Likewise.
* gnu/packages/ruby.scm (ruby-sorcerer)[description]: Likewise.
* gnu/packages/rust-apps.scm (watchexec)[description]: Likewise.
* gnu/packages/rust.scm (mrustc)[synopsis]: Likewise.
* gnu/packages/shells.scm (s-shell)[description]: Likewise.
* gnu/packages/ssh.scm (sshpass)[description]: Likewise.
* gnu/packages/terminals.scm (beep)[description]: Likewise.
* gnu/packages/web.scm (perl-lwp-useragent-cached)[description]:
Likewise.
* gnu/packages/wv.scm (wv)[description]: Likewise.
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* gnu/packages/java.scm (antlr4): New variable.
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* gnu/packages/java.scm (java-antlr4-runtime): New variable.
* gnu/packages/patches/java-antlr4-Add-standalone-generator.patch: New
file.
* gnu/packages/patches/java-antlr4-fix-code-too-large.java: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
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* gnu/packages/java.scm (java-treelayout): New variable.
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* gnu/packages/java.scm (java-hdrhistogram)[source]: Download using
git-fetch.
[arguments]: Add phase to make source writable.
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* gnu/packages/java.scm (java-jakarta-oro)[arguments]: Do not record
current date.
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* gnu/packages/java.scm (java-bsh)[arguments]: Do not record current
date.
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* gnu/packages/java.scm (java-cisd-jhdf5)[arguments]: Update location of
commons-io jar.
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* gnu/packages/java.scm (java-cisd-base)[arguments]: Update location of
commons-io jar.
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* gnu/packages/java.scm (java-hamcrest-library)[arguments]: Fix
build.xml in the same way it is fixed in java-hamcrest-all to prevent a
race condition.
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* gnu/packages/java.scm (java-guava)[source]: Add a file-name field.
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* gnu/packages/maven.scm (maven-surefire-common): New variable.
* gnu/packages/java.scm (java-hawtjni, java-jansi-native, java-jansi):
Install from pom file.
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* gnu/packages/java.scm (java-plexus-compiler-manager): New variable.
(java-plexus-compiler-api, java-plexus-compiler-javac): Install from pom
file.
(java-plexus-compiler-javac): Install plexus components file.
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* gnu/packages/java.scm (java-plexus-java): New variable.
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* gnu/packages/maven.scm (maven-core-bootstrap): Make public and hidden.
(java-plexus-component-metadata): Move to ...
* gnu/packages/java.scm: ... here.
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* gnu/packages/java.scm (java-qdox-2-M9): New variable.
(java-qdox): Install from pom file.
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* gnu/packages/maven.scm (maven-filtering): New variable.
* gnu/packages/java.scm (java-sisu-build-api): Install from pom file.
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* gnu/packages/java.scm (java-plexus-digest): New variable.
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* gnu/packages/java.scm (java-modello-core): Propagate inputs.
(java-modello-plugins-java, java-modello-plugins-xml, java-modello-xpp3):
Remove java-modello-core's inputs and propagate.
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* gnu/packages/java.scm (java-plexus-container-default-bootstrap)
(java-plexus-component-annotations, java-plexus-cipher, java-asm)
(java-jsr250, java-commons-cli, java-slf4j-api, java-slf4j-simple)
(java-bsh, java-jboss-el-api-spec, java-jboss-interceptors-api-spec)
(java-cdi-api, java-eclipse-sisu-plexus): Install from pom file.
* gnu/packages/maven.scm (maven-resolver-api, maven-resolver-spi)
(maven-resolver-util, maven-resolver-connector-basic, maven-resolver-impl)
(java-plexus-utils, maven-artifact, maven-model, maven-builder-support)
(maven-settings, maven-settings-builder, maven-model-builder)
(maven-repository-metadata, maven-resolver-provider, maven-plugin-api)
(maven-core, maven-embedder, maven-compat): Install from pom file.
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* gnu/packages/java.scm (java-httpcomponents-httpclient): Update to
4.5.12.
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* gnu/packages/java.scm (java-plexus-interpolation): Update to 1.26.
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* gnu/packages/java.scm (java-bsh)[source]: Remove bundled jar files.
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* gnu/packages/java.scm (javacc-3): New variable.
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* gnu/packages/java.scm (java-plexus-archiver): Update to 4.2.2.
(java-plexus-container-default, java-commons-compress)
(java-geronimo-xbean-reflect): Install from pom file.
(java-guava): Install from pom
[source]: Use git source instead of generated source jar.
* gnu/packages/java-compression.scm (java-xz, java-iq80-snappy): Install
from pom.
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* gnu/packages/java.scm (java-plexus-classworlds): Update to 2.6.0.
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* gnu/packages/java.scm (java-plexus-io): Update to 3.2.0.
(java-commons-io)[arguments]: Install from pom file.
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* gnu/packages/java.scm (java-plexus-utils-3.3.0): New variable.
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* gnu/packages/java.scm (java-plexus-utils): Update to 3.2.1.
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* gnu/packages/java.scm (java-commons-codec): Update to 1.14.
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* gnu/packages/java.scm (java-commons-lang3): Update to 3.9.
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* gnu/packages/java.scm (java-junit)[arguments]: Replace install phase.
(java-hamcrest-core)[arguments]: Replace install phase.
(java-hamcrest-library)[arguments]: Replace install phase.
(java-cisd-jhdf5, java-commons-math3, java-commons-collections4)
(java-commons-io, java-commons-exec-1.1, java-commons-exec)
(java-commons-lang3, java-commons-codec, java-native-access)
(java-native-access-platform, java-hamcrest-all): Change junit and hamcrest
jar location accordingly.
(java-hamcrest-all): Use old install phase of java-hamcrest-core.
* gnu/packages/maths.scm (java-hdf): Change junit and hamcrest jar
location accordingly.
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