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2022-06-01Merge remote-tracking branch 'origin/master' into stagingEfraim Flashner
2022-05-31gnu: Remove python2-autograd....* gnu/packages/machine-learning.scm (python2-autograd): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-fastlmm....* gnu/packages/machine-learning.scm (python2-fastlmm): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-scikit-learn....* gnu/packages/machine-learning.scm (python2-scikit-learn): Delete variable. (python-scikit-learn)[properties]: Remove the python2-variant property. Maxim Cournoyer
2022-05-16Merge branch 'master' into stagingEfraim Flashner
2022-05-15gnu: openfst: Update to 1.8.2, enable ngram extension...This extension is required by some programs that depend on openfst that aren't yet packaged. * gnu/packages/machine-learning.scm (openfst): Update to 1.8.2. [arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aurora
2022-05-15gnu: openfst-1.7.3: Enable ngram-fst extension & C++14 build...The extension doesn't build in old versions of openfst such as 1.7.3 without manually setting CXXFLAGS. This package definition, including this workaround to build extensions successfully, will need to be removed once kaldi is fixed upstream and can be used with up-to-date versions of openfst. * gnu/packages/machine-learning.scm (openfst-1.7.3)[arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aurora
2022-05-15gnu: kaldi: Update to dd107fd, bypass tests...Either kaldi's tests are broken or openblas has reintroduced a bug: - https://github.com/kaldi-asr/kaldi/pull/4421 More testing & fixes required upstream to re-enable the tests later. For now they'll just have to be ignored. * gnu/packages/machine-learning.scm (kaldi): Update to dd107fd. [arguments]: In 'configure' phase, modify "matrix/Makefile". Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aurora
2022-05-15gnu: openfst: Add 1.7.3 for kaldi...Kaldi is currently broken with openfst versions newer than 1.7.3 as it changed some of its function signatures. Once Kaldi is patched/fixed, this should be removed. Reference Issues: - https://github.com/kaldi-asr/kaldi/issues/4131 - https://github.com/kaldi-asr/kaldi/issues/4393 * gnu/packages/machine-learning.scm (openfst-1.7.3): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aurora
2022-05-12gnu: python-umap-learn: Update to 0.5.3....* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.3. [source]: Use git. [arguments]: New field. [native-inputs]: Delete python-joblib and python-nose. Add python-pytest. [propagated-inputs]: Add python-pynndescent and python-tqdm. [synopsis]: Fix indentation. [description]: Fix typo and re-indent. Maxim Cournoyer
2022-05-12gnu: python-pynndescent: Update to 0.5.6....* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.6. [phases]{check}: Skip the test_weighted_minkowski test. [native-inputs, propagated-inputs]: Re-indent. Maxim Cournoyer
2022-05-12gnu: python-scikit-learn: Parallelize build and test suite....* gnu/packages/machine-learning.scm (python-scikit-learn) [phases]{configure}: New phase. {build-ext}: Add '-j' option. {check}: Add '-n' option. [native-inputs]: Add python-pytest-xdist. Maxim Cournoyer
2022-04-15gnu: python-hmmlearn: Remove cythonized file....* gnu/packages/machine-learning.scm (python-hmmlearn)[source]: Add snippet to remove cythonized file. Efraim Flashner
2022-03-15gnu: liblantern: Update to 0.7.2....* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.2. Ricardo Wurmus
2022-03-15gnu: liblantern: Update to 0.7.0....* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.0. Ricardo Wurmus
2022-03-15gnu: python-pytorch-for-r-torch: Reuse python-pytorch....* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Use definition on python-pytorch, thereby updating to 1.10.2. Ricardo Wurmus
2022-02-11gnu: Add liblantern....* gnu/packages/machine-learning.scm (liblantern): New variable. Ricardo Wurmus
2022-02-11gnu: Add python-pytorch-for-r-torch....* gnu/packages/patches/python-pytorch-1.9.0-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): New variable. Ricardo Wurmus
2022-02-11gnu: python-pytorch: Update to 1.10.2....* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.2. Ricardo Wurmus
2022-01-24gnu: xgboost: Update to 1.5.2....* gnu/packages/machine-learning.scm (xgboost, python-xgboost): Update to 1.5.2. (python-xgboost)[arguments]: Enable previously failing test. * gnu/packages/patches/xgboost-use-system-dmlc-core.patch: Update patch. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Vinicius Monego
2022-01-19gnu: python-scikit-learn: Update to 1.0.2....* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.2. Marius Bakke
2022-01-17Merge branch 'version-1.4.0'...With resolved conflicts in: gnu/packages/gnome.scm gnu/packages/openstack.scm gnu/packages/python-xyz.scm Maxim Cournoyer
2022-01-10gnu: python-scikit-learn: Remove obsolete phase....* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments] <#:phases>: Remove 'make-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-14gnu: python-opentsne: Update to 0.6.1....* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.6.1. [source]<file-name>: Use git-file-name. [arguments]<#:phases>: Don't return #t. Add 'skip-test phase after 'unpack to skip a failing test. Vinicius Monego
2022-01-14gnu: python-pynndescent: Update to 0.5.5....* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.5. [arguments]<#:phases>: Override 'check phase. [native-inputs]: Remove python-nose. Add python-pytest. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego
2022-01-11gnu: python-scikit-rebate: Update to 0.62....* gnu/packages/machine-learning.scm (python-scikit-rebate): Update to 0.62. [arguments]: Disable tests. [native-inputs]: Remove. Marius Bakke
2021-12-28gnu: Add guile-aiscm-next....* gnu/packages/machine-learning.scm (guile-aiscm-next): New variable. Ricardo Wurmus
2021-12-28gnu: guile-aiscm: Remove opencv and tensorflow....* gnu/packages/machine-learning.scm (guile-aiscm)[inputs]: Remove opencv and tensorflow. Ricardo Wurmus
2021-12-28gnu: guile-aiscm: Remove timestamp from documentation....* gnu/packages/machine-learning.scm (guile-aiscm)[arguments]: Add phase 'build-reproducibly. Ricardo Wurmus
2021-12-28gnu: tensorflow: Install C headers....* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Add build phase 'patch-cmake-file-to-install-c-headers; move setting of LDFLAGS from 'build-pip-package to 'unpack-third-party-sources; move 'build-pip-package after 'install phase. [source]: Add patch. * gnu/packages/patches/tensorflow-c-api-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ricardo Wurmus
2021-12-27gnu: Add guile-aiscm....* gnu/packages/machine-learning.scm (guile-aiscm): New variable. Ricardo Wurmus
2021-12-15gnu: tensorflow: Fix build with newer numpy....* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Rename 'python3.7-compatibility to 'python3.9-compatibility and patch file to allow building with newer numpy. Ricardo Wurmus
2021-12-14gnu: tensorflow: Do not unpack directory....* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Copy Eigen source code instead of trying to unpack it. Ricardo Wurmus
2021-12-13gnu: Further simplify package inputs....This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.) Ludovic Courtès
2021-12-13gnu: Simplify package inputs....This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès
2021-12-09gnu: python2-scikit-learn: Disable one more test....* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]: Do not inherit; remove obsolete 'make-files-writable phase; disable one more failing test in 'check phase. Ricardo Wurmus
2021-12-09gnu: libsvm: Install header and library....* gnu/packages/machine-learning.scm (libsvm)[arguments]: Add build phase 'build-lib; also install header file and shared library in the 'install phase. Ricardo Wurmus
2021-12-08gnu: ocaml-mcl: Add -fcommon to compiler flags....* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Add -fcommon. Ricardo Wurmus
2021-12-07gnu: mcl: Add -fcommon to compiler flags....* gnu/packages/machine-learning.scm (mcl)[arguments]: Set CFLAGS. Ricardo Wurmus
2021-12-05Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus
2021-12-02gnu: randomjungle: Fix compatibility errors....* gnu/packages/machine-learning.scm (randomjungle)[arguments]: Add build phase 'fix-compatibility-errors to patch type errors. Ricardo Wurmus
2021-11-20gnu: python-scikit-learn: Update to 1.0.1....* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.1. [arguments]: Disable one failing network test. Ricardo Wurmus
2021-11-20gnu: python-scikit-learn: Run tests conditionally....* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Respect TESTS? in 'check phase. Ricardo Wurmus
2021-11-20gnu: python-pytorch: Warn of missing test inputs....* gnu/packages/machine-learning.scm (python-pytorch): Add comment. Ricardo Wurmus
2021-11-20gnu: python-pytorch: Add missing input....* gnu/packages/machine-learning.scm (python-pytorch)[propagated-inputs]: Add python-click. Ricardo Wurmus
2021-11-20gnu: python-pytorch: Use ADD-INSTALLED-PYTHONPATH....* gnu/packages/machine-learning.scm (python-pytorch)[arguments]: Do not set PYTHONPATH; use add-installed-pythonpath instead. Ricardo Wurmus
2021-11-17Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-15gnu: python-pytorch: Update to 1.10.0....* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.0. * gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust. Ludovic Courtès
2021-11-11gnu: python-keras: Skip a flaky test....* gnu/packages/machine-learning.scm (python-keras) [phases]{check}: Also skip the test_stateful_metrics test. Maxim Cournoyer
2021-11-11gnu: python-keras: Enable parallel tests....* (python-keras)[phases]: Delete trailing #t. {check}: Honor TESTS?. Run the tests in parallel. Disable PEP8 lint. Maxim Cournoyer