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2019-12-05gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Pierre Neidhardt
stumpwm to wm. * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp.
2019-12-02gnu: python-scipy: Move to (gnu packages python-science).Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-scipy, python2-scipy): Move these from here... * gnu/packages/python-science.scm (python-scipy, python2-scipy): ...to here. * gnu/packages/bioinformatics.scm, gnu/packages/machine-learning.scm, gnu/packages/statistics.scm: Adjust module imports.
2019-11-28Revert "gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Ricardo Wurmus
stumpwm to wm." This reverts commit abf43a67d5929bf279edce3e790ef1348dda32a5 as it broke "guix pull".
2019-11-28gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.Pierre Neidhardt
* gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
2019-10-21gnu: Add gloo.Giacomo Leidi
* gnu/packages/machine-learning.scm (gloo): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-10-21gnu: protobuf: Update to 3.10.0.Marius Bakke
* gnu/packages/protobuf.scm (protobuf, python-protobuf): Update to 3.10.0. (protobuf-next, python-protobuf-next): Rename to .... (protobuf-3.6, python-protobuf-3.6): ... this. (protobuf-3.5): New public variable. * gnu/packages/machine-learning.scm (grpc)[native-inputs]: Change from PROTOBUF-NEXT to PROTOBUF. (tensorflow)[native-inputs, propagated-inputs]: Adjust for renamed PROTOBUF-NEXT. * gnu/packages/robotics.scm (aseba)[inputs]: Change from PROTOBUF to PROTOBUF-3.5. * gnu/packages/telephony.scm (mumble)[inputs]: Likewise.
2019-10-12gnu: gRPC: Update description.Marius Bakke
* gnu/packages/machine-learning.scm (grpc)[description]: Remove "open source".
2019-10-12gnu: FANN: Update description.Marius Bakke
* gnu/packages/machine-learning.scm (fann)[description]: Remove "open source".
2019-10-12gnu: python-scikit-learn: Update to 0.20.4.Jesse Gibbons
Fixes <https://bugs.gnu.org/37705>. * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.4. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-10-06Merge branch 'master' into core-updatesRicardo Wurmus
2019-10-06gnu: Add cl-random-forest.Guillaume Le Vaillant
* gnu/packages/machine-learning.scm (sbcl-cl-random-forest, cl-random-forest, ecl-cl-random-forest): New variables.
2019-10-06gnu: Add cl-online-learning.Guillaume Le Vaillant
* gnu/packages/machine-learning.scm (sbcl-cl-online-learning, cl-online-learning, ecl-cl-online-learning): New variables.
2019-10-06gnu: Add cl-libsvm-format.Guillaume Le Vaillant
* gnu/packages/machine-learning.scm (sbcl-cl-libsvm-format, cl-libsvm-format, ecl-cl-libsvm-format): New variables.
2019-08-13Merge branch 'master' into core-updatesMarius Bakke
2019-08-07gnu: ghmm: Remove extra build phase.Efraim Flashner
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Remove unneeded 'autogen phase.
2019-08-07gnu: ghmm: Update source file-name field.Efraim Flashner
* gnu/packages/machine-learning.scm (ghmm)[source]: Change 'file-name field to include '-checkout' string.
2019-08-05gnu: python-scikit-learn: Make gzip timestamps writable.Brian Leung
* gnu/packages/machine-learning.scm (python-scikit-learn) [arguments]: Add custom phase to make gzip timestamps writable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-07-19gnu: python-keras: Add upstream patch.Marius Bakke
* gnu/packages/patches/python-keras-integration-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/machine-learning.scm (python-keras)[source](patches): New field.
2019-07-19gnu: tensorflow: Provide older setuptools version.Marius Bakke
* gnu/packages/python-xyz.scm (python-setuptools-for-tensorflow): New public variable. * gnu/packages/machine-learning.scm (tensorflow)[native-inputs]: Add it.
2019-07-15gnu: gRPC: Re-add custom c-ares variant.Marius Bakke
Commit e8393ebe46d9ad09aceb152618db490378ba5ded updated c-ares without knowing that cmake-build-system was the most important feature of 'c-ares-next'. * gnu/packages/adns.scm (c-ares/cmake): New hidden package. * gnu/packages/machine-learning.scm (grpc)[inputs]: Change C-ARES to C-ARES/CMAKE.
2019-07-14gnu: gst-kaldi-nnet2-online: Adjust for GCC 7.Marius Bakke
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online)[arguments]: Don't read CPLUS_INCLUDE_PATH, or pass -std=c++11. End phases on #t.
2019-06-21build-system/python: Export 'python-version'.Ludovic Courtès
* guix/build/python-build-system.scm (get-python-version): Rename to... (python-version): ... this. Update callers. Make public. * gnu/packages/gstreamer.scm (python-gst)[arguments]: Adjust accordingly. * gnu/packages/machine-learning.scm (ghmm)[arguments]: Likewise. * gnu/packages/openldap.scm (389-ds-base)[arguments]: Import (guix build python-build-system). Use 'python-version'. * gnu/packages/package-management.scm (conda)[arguments]: Use 'python-version'.
2019-06-20Merge branch 'staging' into core-updatesMarius Bakke
2019-06-19gnu: Add python-keras.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-keras): New variable.
2019-06-19gnu: Add python-keras-preprocessing.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-keras-preprocessing): New variable.
2019-06-19gnu: Add python-keras-applications.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-keras-applications): New variable.
2019-06-18gnu: Add python-iml.Nicolas Goaziou
* gnu/packages/machine-learning.scm (python-iml): New variable.
2019-06-18gnu: gemmlowp-for-tensorflow: Use SSE2.Ricardo Wurmus
* gnu/packages/machine-learning.scm (gemmlowp-for-tensorflow)[arguments]: Only enable SSE2, not SSE4.1 on i686 and x86_64 architectures.
2019-06-17gnu: python-scikit-learn: Update to 0.20.3.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.3.
2019-06-13Merge branch 'master' into core-updatesLudovic Courtès
2019-05-26gnu: rxcpp: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/machine-learning.scm (rxcpp)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2019-05-26gnu: rxcpp: Update to 4.1.0.Tobias Geerinckx-Rice
* gnu/packages/machine-learning.scm (rxcpp): Update to 4.1.0.
2019-05-01Merge branch 'master' into core-updatesMarius Bakke
2019-04-25gnu: libsvm: Update to 3.23.Tobias Geerinckx-Rice
* gnu/packages/machine-learning.scm (libsvm): Update to 3.23.
2019-04-25gnu: openfst: Update to 1.7.2.Tobias Geerinckx-Rice
* gnu/packages/machine-learning.scm (openfst): Update to 1.7.2.
2019-04-11gnu: Add tensorflow.Ricardo Wurmus
* gnu/packages/machine-learning.scm (tensorflow): New variable.
2019-04-11gnu: ocaml-mcl: Do not use unstable tarball.Ricardo Wurmus
* gnu/packages/machine-learning.scm (ocaml-mcl)[source]: Use git-fetch.
2019-04-11gnu: ocaml-mcl: Build with latest OCaml.Ricardo Wurmus
* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Remove #:ocaml and #:findlib arguments; patch code in build phase. [native-inputs]: Add ocamlbuild.
2019-04-08gnu: Add gemmlowp-for-tensorflow.Ricardo Wurmus
* gnu/packages/machine-learning.scm (gemmlowp-for-tensorflow): New variable.
2019-03-25gnu: r-kernlab: Move to (gnu packages cran).Ricardo Wurmus
* gnu/packages/machine-learning.scm (r-kernlab): Move from here... * gnu/packages/cran.scm (r-kernlab): ...to here.
2019-03-23Merge branch 'staging' into core-updatesMarius Bakke
2019-03-18gnu: Add grpc.Ricardo Wurmus
* gnu/packages/machine-learning.scm (grpc): New variable.
2019-03-17gnu: Add kaldi-gstreamer-server.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): New variable.
2019-03-14gnu: Add gst-kaldi-nnet2-online.Ricardo Wurmus
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): New variable.
2019-03-14gnu: kaldi: Install headers and fix installation of libraries.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi)[arguments]: Fix installation of libraries and install headers in "install" phase.
2019-03-13gnu: Add kaldi.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi): New variable.
2019-03-09gnu: Add openfst.Ricardo Wurmus
* gnu/packages/machine-learning.scm (openfst): New variable.
2019-03-07gnu: python2-fastlmm: Disable tests.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python2-fastlmm)[arguments]: Disable tests.
2019-02-19gnu: ocaml@4.01: Remove the package, affected by a CVE, and its dependentAndreas Enge
packages. This makes progress towards fixing <https://bugs.gnu.org/27462>. * gnu/packages/ocaml.scm (ocaml-4.01, ocaml4.01-findlib, ocaml4.01-ounit, ocaml4.01-camlzip, ocaml4.01-qtest, ocaml4.01-bisect, ocaml4.01-sqlite3, ocaml4.01-csv, ocaml4.01-xmlm, ocaml4.01-batteries, ocaml4.01-gsl): Remove variables. (ocaml-batteries, ocaml-bisect)[properties]: Remove ocaml4.01-variant. * gnu/packages/machine-learning.scm (ocaml4.01-mcl): Remove variable.
2019-01-15gnu: Separate Python core packages from the rest.Ricardo Wurmus
* gnu/packages/python.scm: Move hundreds of package definitions from here... * gnu/packages/python-xyz.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/benchmark.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/cluster.scm, gnu/packages/compression.scm, gnu/packages/connman.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/direct-connect.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/elf.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/enlightenment.scm, gnu/packages/finance.scm, gnu/packages/fltk.scm, gnu/packages/fontutils.scm, gnu/packages/freedesktop.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/gtk.scm, gnu/packages/ham-radio.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/kde-frameworks.scm, gnu/packages/key-mon.scm, gnu/packages/libffi.scm, gnu/packages/libreoffice.scm, gnu/packages/libusb.scm, gnu/packages/lirc.scm, gnu/packages/logging.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/medical.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nutrition.scm, gnu/packages/openldap.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/polkit.scm, gnu/packages/protobuf.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/qt.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/search.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/simulation.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wicd.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm: Update module references.
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