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2020-08-10gnu: Add clapack....* gnu/packages/maths.scm (clapack): New variable. Ricardo Wurmus
2020-08-04gnu: mcrl2: Update to 202006.0....* gnu/packages/maths.scm (mcrl2): Update to 202006.0. Jan (janneke) Nieuwenhuizen
2020-07-23gnu: Add sleef....* gnu/packages/maths.scm (sleef): New variable. Signed-off-by: Brett Gilio <brettg@gnu.org> Vinicius Monego
2020-07-17gnu: java-junit: Install from pom file....* gnu/packages/java.scm (java-junit)[arguments]: Replace install phase. (java-hamcrest-core)[arguments]: Replace install phase. (java-hamcrest-library)[arguments]: Replace install phase. (java-cisd-jhdf5, java-commons-math3, java-commons-collections4) (java-commons-io, java-commons-exec-1.1, java-commons-exec) (java-commons-lang3, java-commons-codec, java-native-access) (java-native-access-platform, java-hamcrest-all): Change junit and hamcrest jar location accordingly. (java-hamcrest-all): Use old install phase of java-hamcrest-core. * gnu/packages/maths.scm (java-hdf): Change junit and hamcrest jar location accordingly. Julien Lepiller
2020-07-12gnu: Remove ".git" from "https://github/…/….git"....Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix swh) would sometimes return #f for these because the ".git" URLs are redirects to the non-".git" URLs. Consequently, 'guix lint -c archival' would keep saying "scheduled Software Heritage archival"; likewise, the fallback download code would fail. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/aidc.scm, gnu/packages/algebra.scm, gnu/packages/android.scm, gnu/packages/animation.scm, gnu/packages/arcan.scm, gnu/packages/assembly.scm, gnu/packages/audio.scm, gnu/packages/authentication.scm, gnu/packages/avr.scm, gnu/packages/axoloti.scm, gnu/packages/backup.scm, gnu/packages/bash.scm, gnu/packages/benchmark.scm, gnu/packages/bioconductor.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/boost.scm, gnu/packages/build-tools.scm, gnu/packages/c.scm, gnu/packages/calendar.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/chez.scm, gnu/packages/clojure.scm, gnu/packages/code.scm, gnu/packages/compression.scm, gnu/packages/compton.scm, gnu/packages/coq.scm, gnu/packages/cpp.scm, gnu/packages/cran.scm, gnu/packages/crypto.scm, gnu/packages/curl.scm, gnu/packages/databases.scm, gnu/packages/datastructures.scm, gnu/packages/debug.scm, gnu/packages/disk.scm, gnu/packages/distributed.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/dns.scm, gnu/packages/docker.scm, gnu/packages/education.scm, gnu/packages/efi.scm, gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/embedded.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/erlang.scm, gnu/packages/fabric-management.scm, gnu/packages/file-systems.scm, gnu/packages/finance.scm, gnu/packages/firmware.scm, gnu/packages/flashing-tools.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/fpga.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/genealogy.scm, gnu/packages/genimage.scm, gnu/packages/geo.scm, gnu/packages/gimp.scm, gnu/packages/gl.scm, gnu/packages/gnome-xyz.scm, gnu/packages/gnome.scm, gnu/packages/gnuzilla.scm, gnu/packages/golang.scm, gnu/packages/gpodder.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/groff.scm, gnu/packages/groovy.scm, gnu/packages/gtk.scm, gnu/packages/guile-xyz.scm, gnu/packages/guile.scm, gnu/packages/hardware.scm, gnu/packages/haskell-apps.scm, gnu/packages/haskell-xyz.scm, gnu/packages/hexedit.scm, gnu/packages/i2p.scm, gnu/packages/ibus.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/ipfs.scm, gnu/packages/java-graphics.scm, gnu/packages/java-maths.scm, gnu/packages/java.scm, gnu/packages/javascript.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/jupyter.scm, gnu/packages/kodi.scm, gnu/packages/language.scm, gnu/packages/lego.scm, gnu/packages/less.scm, gnu/packages/libusb.scm, gnu/packages/linux.scm, gnu/packages/lirc.scm, gnu/packages/lisp-xyz.scm, gnu/packages/llvm.scm, gnu/packages/logging.scm, gnu/packages/lolcode.scm, gnu/packages/lua.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/maths.scm, gnu/packages/maven.scm, gnu/packages/mes.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/node-xyz.scm, gnu/packages/ocaml.scm, gnu/packages/ocr.scm, gnu/packages/onc-rpc.scm, gnu/packages/opencl.scm, gnu/packages/opencog.scm, gnu/packages/pantheon.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/perl6.scm, gnu/packages/phabricator.scm, gnu/packages/popt.scm, gnu/packages/printers.scm, gnu/packages/prolog.scm, gnu/packages/protobuf.scm, gnu/packages/pulseaudio.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python-xyz.scm, gnu/packages/qt.scm, gnu/packages/radio.scm, gnu/packages/rails.scm, gnu/packages/rdf.scm, gnu/packages/rednotebook.scm, gnu/packages/rpc.scm, gnu/packages/rsync.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/screen.scm, gnu/packages/security-token.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/shellutils.scm, gnu/packages/simh.scm, gnu/packages/sml.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/stenography.scm, gnu/packages/sync.scm, gnu/packages/syncthing.scm, gnu/packages/synergy.scm, gnu/packages/telephony.scm, gnu/packages/terminals.scm, gnu/packages/tex.scm, gnu/packages/texinfo.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tmux.scm, gnu/packages/tor.scm, gnu/packages/toys.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/virtualization.scm, gnu/packages/vlang.scm, gnu/packages/vnc.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wireservice.scm, gnu/packages/wm.scm, gnu/packages/wxwidgets.scm, gnu/packages/xdisorg.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, tests/lint.scm: Remove trailing ".git" from 'git-reference' URL. Ludovic Courtès
2020-07-11gnu: ruby-asciimath: Update to 2.0.1....* gnu/packages/maths.scm (ruby-asciimath): Update to 2.0.1. [arguments]: Remove. [native-inputs]: Remove bundler, add ruby-nokogiri. Maxim Cournoyer
2020-07-09gnu: qalculate-gtk: Fix typo in description....* gnu/packages/maths.scm (qalculate-gtk)[description]: Fix typo. Tobias Geerinckx-Rice
2020-07-07gnu: metamath: Update to 0.183....* gnu/packages/maths.scm (metamath): Update to 0.183. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> B. Wilson
2020-07-01gnu: Add metamath....* gnu/packages/maths.scm (metamath): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> B. Wilson
2020-06-30gnu: maxima: Update to 5.44.0....* gnu/packages/maths.scm (maxima): Update to 5.44.0. Kei Kebreau
2020-06-23gnu: xaos: Add a source file-name....* gnu/packages/maths.scm (xaos)[source]: Add file-name field. Efraim Flashner
2020-06-10gnu: ipopt: Fix source URI....* gnu/packages/maths.scm (ipopt)[source]: Fix URI. Nicolas Goaziou
2020-06-10gnu: ipopt: Use HTTPS home page URI....* gnu/packages/maths.scm (ipopt)[home-page]: Use HTTPS URI. Nicolas Goaziou
2020-05-29gnu: xaos: Update to 4.0....* gnu/packages/maths.scm (xaos): Update to 4.0. [source]: Use git-fetch. [native-inputs]: Add qtbase and qttools. [arguments]: Remove #:make-flags options; replace 'configure' phase; add 'make-qt-deterministic' and 'install-data' phases. [home-page]: Update URL. Kei Kebreau
2020-05-29gnu: clp: Update to 1.17.6....* gnu/packages/maths.scm (clp): Update to 1.17.6. Tobias Geerinckx-Rice
2020-05-27gnu: hdf4: Provide an absolute reference to libjpeg....* gnu/packages/maths.scm (hdf4)[arguments]: Add phase 'provide-absolute-libjpeg-reference'. Marius Bakke
2020-05-27gnu: nauty: Update to 2.7r1....* gnu/packages/maths.scm (nauty): Update to 2.7r1. [arguments]: Prevent using "-march-native". Install new executable. Nicolas Goaziou
2020-05-25gnu: wxmaxima: Update to 20.04.0....* gnu/packages/maths.scm (wxmaxima): Update to 20.04.0. Kei Kebreau
2020-05-25gnu: qhull: Update to 2019.1...* gnu/packages/maths.scm (qhull): update to 2019.1 Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ekaitz Zarraga
2020-05-17gnu: gsl: Disable failing tests on powerpc....* gnu/packages/maths.scm (gsl)[arguments]: Skip the same set of tests on powerpc as skipped on aarch64. Efraim Flashner
2020-05-16gnu: z3: Update to 4.8.8....* gnu/packages/maths.scm (z3): Update to 4.8.8. Tobias Geerinckx-Rice
2020-05-13mailmap: Update entries for Nikita....* .mailmap: change email and name for Nikita. * Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish, gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/erlang.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile-xyz.scm, gnu/packages/haskell-apps.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell-xyz.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp-xyz.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python-xyz.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> nikita
2020-05-13gnu: glm: Update to 0.9.9.8....* gnu/packages/patches/glm-restore-install-target.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/maths.scm (glm): Update to 0.9.9.8. [arguments]: New field. Marius Bakke
2020-05-10gnu: flann: Update to 1.9.1....* gnu/packages/maths.scm (flann): Update to 1.9.1. [source]: Use 'git-fetch'. [home-page]: Change to github.com. Ludovic Courtès
2020-05-10gnu: flann: Remove "octave" output....Octave support currently fails to build and is not used by any other package in Guix. * gnu/packages/maths.scm (flann)[outputs]: Remove "octave" output. [inputs]: Remove OCTAVE-CLI. [arguments]: Remove 'set-octave-directory' phase. Ludovic Courtès
2020-04-30Merge branch 'master' into core-updates... Conflicts: gnu/local.mk gnu/packages/backup.scm gnu/packages/emacs-xyz.scm gnu/packages/guile.scm gnu/packages/lisp.scm gnu/packages/openldap.scm gnu/packages/package-management.scm gnu/packages/web.scm gnu/packages/xorg.scm Marius Bakke
2020-04-28gnu: Add hdf5-blosc....* gnu/packages/maths.scm (hdf5-blosc): New variable. Ricardo Wurmus
2020-04-23Merge branch 'master' into core-updates... Conflicts: etc/news.scm gnu/local.mk gnu/packages/bootloaders.scm gnu/packages/linphone.scm gnu/packages/linux.scm gnu/packages/tls.scm gnu/system.scm Marius Bakke
2020-04-22gnu: maths: dune-*: Update to version 2.7...* gnu/packages/maths.scm (dune-*): Update to version 2.7. (dune-uggrid)[source] Download from Git, as no release tarball for version 2.7 exists. (dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no tags for version 2.7 exist (yet?). (dune-istl)[source](patches) Add patch required to build version 2.7 without openmpi. * gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2020-04-20gnu: libqalculate: Fix libcurl gnutls CA cert bundle file....* gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (libqalculate)[source]: Use it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> R Veera Kumar
2020-04-14gnu: dune-localfunctions: Fix build failure....* gnu/packages/maths.scm (dune-localfunctions)[arguments]: Add phase 'hide-gfortran'. Marius Bakke
2020-04-14gnu: dune-istl: Fix build failure....* gnu/packages/maths.scm (dune-istl)[arguments]: Add phase 'hide-gfortran'. Marius Bakke
2020-04-13Merge branch 'master' into core-updatesMarius Bakke
2020-04-12gnu: dune-subgrid: Fix grammar of "allows to mark" to "marks"....* gnu/packages/maths (dune-subgrid): Fix grammar. Vagrant Cascadian
2020-04-12gnu: libqalculate: Fix spelling of "uncertainty"....* gnu/packages/maths (libqalculate): Fix typo. Vagrant Cascadian
2020-04-08Merge branch 'master' into core-updates... Conflicts: etc/news.scm gnu/local.mk gnu/packages/check.scm gnu/packages/cross-base.scm gnu/packages/gimp.scm gnu/packages/java.scm gnu/packages/mail.scm gnu/packages/sdl.scm gnu/packages/texinfo.scm gnu/packages/tls.scm gnu/packages/version-control.scm Marius Bakke
2020-04-07gnu: Add dsfmt....* gnu/packages/maths.scm (dsfmt): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Nicolò Balzarotti
2020-04-05gnu: octave-cli: Fix build....* gnu/packages/maths.scm (octave-cli)[inputs]: Add LIBJPEG-TURBO. [arguments]: Add "--enable-link-all-dependencies" in #:configure-flags. Marius Bakke
2020-04-04gnu: scotch: Make some inputs native....* gnu/packages/math.scm (scotch)[inputs]: Move flex & bison from here... [native-inputs]: ...to this new field. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Vincent Legoll
2020-04-03gnu: GSL: Remove unnecessary (%current-system) call....* gnu/packages/maths.scm (gsl)[arguments]: Use the let-bound SYSTEM variable instead of %CURRENT-SYSTEM. Marius Bakke
2020-04-03gnu: Add qalculate-gtk....* gnu/packages/maths.scm (qalculate-gtk): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> R Veera Kumar
2020-04-03gnu: Add libqalculate....* gnu/packages/maths.scm (libqalculate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> R Veera Kumar
2020-04-03gnu: GSL: Disable failing tests on i686-linux and aarch64-linux....This follows up commit 7ad3c81240b366b99f29c4ac5f7c42173c91f38a, which enabled tests that were previously disabled on i686, and takes into account new tests with similar issues. While at it, selectively disable tests on aarch64 instead of disabling all tests. * gnu/packages/maths.scm (gsl)[arguments]: On i686 and aarch64, add #:phases. Marius Bakke
2020-03-30Merge branch 'master' into core-updates... Conflicts: gnu/packages/admin.scm gnu/packages/commencement.scm gnu/packages/guile.scm gnu/packages/linux.scm gnu/packages/package-management.scm gnu/packages/pulseaudio.scm gnu/packages/web.scm Marius Bakke
2020-03-29gnu: z3: Fix build determinism....* gnu/packages/maths.scm (z3)[arguments]: Add a phase to set PYTHONHASHSEED=0. Jakub Kądziołka
2020-03-29gnu: Remove more packages deprecated for over almost a year....* gnu/packages/games.scm (armagetron-advanced) (cataclysm-dark-days-ahead, gnubackgammon, l-abbaye-des-morts) (the-battle-for-wesnoth, the-battle-for-wesnoth-server) (project-starfighter, kiki-the-nano-bot, fish-fillets-ng) (dungeon-crawl-stone-soup): Let's forget this ever happened. * gnu/packages/emacs-xyz.scm (geiser, paredit, git-modes/old-name) (magit, magit-svn, haskell-mode, emacs-emms-player-mpv, bbdb) (ert-runner, groovy-emacs-modes): Remove variable. * gnu/packages/engineering.scm (emacs-emms-player-simple-mpv) (emacs-evil-ediff, emacs-evil-mu4e, emacs-wgrep-helm, ao): Likewise. * gnu/packages/finance.scm (monero-core): Likewise. * gnu/packages/gnome.scm (dungeon-crawl-stone-soup-tiles) (tales-of-maj-eyal, battle-tanks, the-legend-of-edgar) (gnome-tweak-tool): Likewise. * gnu/packages/gnuzilla.scm (conkeror): Likewise. * gnu/packages/guile-xyz.scm (mcron2): Likewise. * gnu/packages/image.scm (pngcrunch): Likewise. * gnu/packages/linux.scm (eudev-with-hwdb): Likewise. * gnu/packages/maths.scm (qtoctave): Likewise. * gnu/packages/package-management.scm (guile2.0-guix): Likewise. * gnu/packages/php.scm (php-with-bcmath): Likewise. * gnu/packages/python-xyz.scm (python-kivy-next, python2-kivy-next): Likewise. * gnu/packages/video.scm (livestreamer): Likewise. * gnu/packages/virtualization.scm (lookingglass): Likewise. * gnu/packages/vulkan.scm (vulkan-icd-loader): Likewise. * gnu/packages/syndication.scm (newsbeuter): Likewise. (newsboat)[description]: Remove historical footnote. Tobias Geerinckx-Rice
2020-03-28Update email address and Savannah handle for Amin Bandali....* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address. * build-aux/git-authenticate.scm: Update my Savannah handle. Amin Bandali
2020-03-28gnu: armadillo: Fix typo in description....* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.". Nicolas Goaziou
2020-03-27Merge branch 'master' into core-updates... Conflicts: gnu/packages/icu4c.scm gnu/packages/man.scm gnu/packages/python-xyz.scm guix/scripts/environment.scm guix/scripts/pack.scm guix/scripts/package.scm guix/scripts/pull.scm guix/store.scm Marius Bakke
2020-03-22gnu: wxmaxima: Update to 20.03.1....* gnu/packages/maths.scm (wxmaxima): Update to 20.03.1. Kei Kebreau