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2018-09-21gnu: hdf5-parallel-openmpi: Really enable parallel build.Paul Garlick
This fix ensures that the H5_HAVE_PARALLEL identifier is correctly set in the file H5pubconf.h. * gnu/packages/maths.scm (hdf5-parallel-openmpi)[arguments]: Add the "--enable-parallel" flag to the list of configure flags. Remove the incompatible "--enable-cxx" flag. Add 'mpi-setup' phase. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-21gnu: hdf5: Allow for absence of utility script.Paul Garlick
* gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'split' phase to check for existence of h5fc script. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-20gnu: Use INVOKE & return #t from Ruby package phases.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from all phases. * gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute INVOKE for SYSTEM*. * gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate) (ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins) (ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure) (ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard) (ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers) (ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer) (ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery) (ruby-rc4, ruby-concurrent)[arguments]: Likewise.
2018-09-19gnu: glm: Update to 0.9.9.2.Marius Bakke
* gnu/packages/maths.scm (glm): Update to 0.9.9.2.
2018-09-19gnu: arpack-ng: Update to 3.6.3.Marius Bakke
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.3.
2018-09-19gnu: arpack-ng: Don't use unstable tarball.Marius Bakke
* gnu/packages/maths.scm (arpack-ng)[source]: Use GIT-FETCH.
2018-09-14gnu: Add openblas-ilp64.Eric Brown
* gnu/packages/maths.scm (openblas-ilp64): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-11mpi: Factorize openmpi setup build phase.Eric Bavier
* gnu/packages/mpi.scm (%openmpi-setup): New variable. * gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi) (superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental) (sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
2018-09-11gnu: arpack-ng-openmpi: Fix build.Paul Garlick
* gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add 'set-test-environment phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-10gnu: mcrl2: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (mcrl2)[home-page]: Use HTTPS.
2018-09-09gnu: OpenBLAS: Update source URI.Marius Bakke
* gnu/packages/maths.scm (openblas)[source](uri): Use the more stable SourceForge mirror.
2018-09-09gnu: glm: Update to 0.9.9.1.Marius Bakke
* gnu/packages/maths.scm (glm): Update to 0.9.9.1.
2018-09-05slepc: Upgrade to 3.9.2.Eric Bavier
* gnu/packages/maths.scm (slepc): Upgrade to 3.9.2.
2018-09-05petsc: Upgrade to 3.9.3.Eric Bavier
* gnu/packages/maths.scm (petsc): Upgrade to 3.9.3. [arguments]: Remove unnecessary configure flags.
2018-09-05petsc: Move example code to "examples" output.Eric Bavier
* gnu/packages/maths.scm (petsc)[arguments]: New 'move-examples' phase.
2018-09-05gnu: Add SUNDIALS.Eric Bavier
* gnu/packages/maths.scm (sundials, sundials-openmpi): New variables.
2018-09-04gnu: petsc-openmpi: Configure with support for hdf5 data format.Paul Garlick
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hdf5-parallel-openmpi. [arguments]: Add '--with-hdf5-include' and '--with-hdf5-lib' flags. Add 'set-test-environment' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-03gnu: arpack-ng: Update to 3.6.2.Marius Bakke
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.2.
2018-09-03gnu: arpack-ng: Drop redundant phase.Marius Bakke
* gnu/packages/maths.scm (arpack-ng)[arguments]: Remove.
2018-08-31gnu: hypre: Update to 2.14.0.Eric Bavier
* gnu/packages/maths.scm (hypre): Update to 2.14.0
2018-08-28gnu: r-pracma: Update to 2.1.5.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (r-pracma): Update to 2.1.5.
2018-08-19Merge branch 'staging'Marius Bakke
2018-08-18gnu: gnuplot: Update to 5.2.4.Kei Kebreau
* gnu/packages/maths.scm (gnuplot): Update to 5.2.4.
2018-08-18gnu: cddlib: Update to 0.94i.Kei Kebreau
* gnu/packages/maths.scm (cddlib): Update to 0.94i.
2018-08-17gnu: octave: Update to 4.4.1.Kei Kebreau
* gnu/packages/maths.scm (octave): Update to 4.4.1. (qtoctave)[source]: Remove obsolete patch. * gnu/packages/patches/qtoctave-qt-5.11-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-17gnu: armadillo: Update to 9.100.5.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (armadillo): Update to 9.100.5.
2018-08-16Merge branch 'master' into stagingMarius Bakke
2018-08-16gnu: armadillo: Update to 9.100.4.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (armadillo): Update to 9.100.4.
2018-08-15gnu: ocaml-gsl: Update to 1.22.0.Kei Kebreau
* gnu/packages/maths.scm (ocaml-gsl): Update to 1.22.0.
2018-08-13gnu: coda: Update to 2.19.Kei Kebreau
* gnu/packages/maths.scm (coda): Update to 2.19.
2018-07-30Merge branch 'master' into stagingMarius Bakke
2018-07-30gnu: openblas: Update to 0.3.2.Marius Bakke
* gnu/packages/maths.scm (openblas): Update to 0.3.2.
2018-07-29gnu: mcrl2: Build with modular qt.Efraim Flashner
* gnu/packages/maths.scm (mcrl2)[inputs]: Replace qt with qtbase.
2018-07-28Merge branch 'master' into stagingMarius Bakke
2018-07-28gnu: openlibm: Update to 0.6.0.Marius Bakke
* gnu/packages/maths.scm (openlibm): Update to 0.6.0.
2018-07-28gnu: glm: Update home page.Marius Bakke
* gnu/packages/maths.scm (glm)[home-page]: Use HTTPS.
2018-07-28gnu: glm: Update to 0.9.9.0.Marius Bakke
* gnu/packages/maths.scm (glm): Update to 0.9.9.0. [source](uri): Change to new download location.
2018-07-22gnu: double-conversion: Update to 3.0.0.Marius Bakke
* gnu/packages/maths.scm (double-conversion): Update to 3.0.0.
2018-07-22gnu: double-conversion: Update home page.Marius Bakke
* gnu/packages/maths.scm (double-conversion)[home-page]: Update to redirected.
2018-07-17gnu: octave: Add qhull support.Kei Kebreau
* gnu/packages/maths.scm (octave)[inputs]: Add qhull.
2018-07-17gnu: Add qhull.Kei Kebreau
* gnu/packages/maths.scm (qhull): New variable.
2018-07-13gnu: openblas: Update to 0.3.1.Marius Bakke
* gnu/packages/patches/openblas-fix-tests-i686.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/maths.scm (openblas): Update to 0.3.1. [arguments, native-inputs]: Don't apply 'openblas-fix-tests-i686.patch'.
2018-07-08Merge branch 'master' into stagingMarius Bakke
2018-07-02gnu: units: Update to 2.17.Kei Kebreau
* gnu/packages/maths.scm (units): Update to 2.17.
2018-07-02Merge branch 'master' into stagingMarius Bakke
2018-06-30gnu: qtoctave: Fix build for Qt 5.11.Kei Kebreau
* gnu/packages/maths.scm (qtoctave)[source]: Add patch. [native-inputs]: Add texlive. * gnu/packages/patches/qtoctave-qt-5.11-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-06-30gnu: slepc: Return #t from all phases.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (slepc)[arguments]: Return #t rather than undefined from phases.
2018-06-30gnu: mumps: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (mumps)[arguments]: Substitute INVOKE for SYSTEM*.
2018-06-30gnu: superlu-dist: Return #t from all phases.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (superlu-dist)[arguments]: Return #t rather than undefined from phases. Substitute INVOKE for SYSTEM*.
2018-06-30gnu: scotch: Return #t from all phases.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (scotch)[arguments]: Return #t rather than undefined from phases. Substitute INVOKE for SYSTEM*.
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