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2020-03-14gnu: openlibm: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS.
2020-03-14gnu: define dune-*-openmpi packagesFelix Gruber
* gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi, dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi, dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi, dune-localfunctions-openmpi, dune-functions-openmpi, dune-pdelab-openmpi): New variables. (add-openmpi-to-dune-package): New function to add openmpi to the inputs of a dune-* package and replace all dune-* packages in its input with the corresponding dune-*-openmpi package. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-14gnu: dune-*: remove openmpi dependencyFelix Gruber
* gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency. [arguments]: remove code to setup openmpi for tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-14gnu: suitesparse: Build with cmake-minimal.Marius Bakke
* gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to CMAKE-MINIMAL.
2020-03-12gnu: dune-istl: Build with suitesparseFelix Gruber
* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build additional solvers in dune-istl. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12gnu: Add dune-subgridFelix Gruber
* gnu/packages/maths.scm (dune-subgrid): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12gnu: Add dune-uggrid.Felix Gruber
* gnu/packages/maths.scm (dune-uggrid): New variable. (dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so that the UGGrid class in dune-grid can be used by packages that have dune-grid as input. (dune-functions)[arguments]: Enable tests that previously weren't built as they require dune-uggrid. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12gnu: dune-*: set up MPI for testsFelix Gruber
* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl, dune-alugrid): [arguments]: correctly set up MPI instead of disabling tests that require MPI. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-09gnu: speedcrunch: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
2020-03-07gnu: openblas: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
2020-03-06gnu: wxmaxima: Update to 20.02.4.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4. [arguments]: Enable tests and set #:test-target to "test". [native-inputs]: Add xorg-server-for-tests.
2020-03-04gnu: SuiteSparse: Update to 5.7.1.Felix Gruber
* gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-02-23gnu: z3: Build the Python bindingsJakub Kądziołka
* gnu/packages/maths.scm (z3)[arguments]: Add the --python and --pypkgdir flags to configure. To facilitate the latter, add (guix build python-build-system) to #:modules and #:imported-modules.
2020-02-21gnu: Add vinci.Andreas Enge
* gnu/packages/maths.scm (vinci): New variable.
2020-02-10gnu: octave, octave-cli: Update to 5.2.0.Kei Kebreau
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0. [inputs]: Add bdb.
2020-01-31gnu: superlu-dist: Update to 6.2.0.Eric Bavier
* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0. [source]: Update upstream url. Remove mpi deprecations patch. * gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-01-31gnu: superlu: Update upstream url.Eric Bavier
* gnu/packages/maths.scm (superlu)[source,home-page]: Update url.
2020-01-23gnu: wxmaxima: Update to 20.01.3.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3. [home-page]: Update URL.
2020-01-19gnu: elemental: Update home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (elemental)[home-page]: Use repository home page.
2020-01-19gnu: petsc: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS.
2020-01-17gnu: Use HTTPS for www.hdfgroup.org.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS. (hdf-java, h5check)[source]: Likewise.
2020-01-17gnu: netcdf: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS.
2020-01-17gnu: scotch: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS.
2020-01-17Update email address for Amin Bandali.Amin Bandali
* .mailmap: Add name and email addresses for Amin Bandali. * gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm: Update email address for Amin Bandali. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2020-01-14gnu: python-slepc4py: Update to 3.11.0.Paul Garlick
* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0.
2020-01-14gnu: python-petsc4py: Update to 3.11.0.Paul Garlick
* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0.
2020-01-10gnu: hdf5@1.10: Update to 1.10.6.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6.
2020-01-07gnu: lapack: Update to 3.9.0.Konrad Hinsen
* gnu/packages/maths.scm (lapack): Update to 3.9.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-13gnu: hdf5@1.10: Update to 1.10.5.Ludovic Courtès
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-06gnu: Add lrslib.Andreas Enge
* gnu/packages/maths.scm (lrslib): New variable.
2019-12-04Merge branch 'staging'Marius Bakke
2019-12-01gnu: z3: Update to 4.8.7.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (z3): Update to 4.8.7.
2019-12-01gnu: nauty: Update to 2.6r12.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (nauty): Update to 2.6r12.
2019-11-28Merge branch 'master' into stagingMarius Bakke
2019-11-27gnu: Remove obsolete import of R build system module.Ricardo Wurmus
* gnu/packages/maths.scm: Remove import of (guix build-system r).
2019-11-27gnu: r-subplex: Move to (gnu packages cran).zimoun
* gnu/packages/maths.scm (r-subplex): Move from here... * gnu/packages/cran.scm (r-subplex): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-27gnu: r-pracma: Move to (gnu packages cran).zimoun
* gnu/packages/maths.scm (r-pracma): Move from here... * gnu/packages/cran.scm (r-pracma): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-27gnu: r-desolve: Move to (gnu packages cran).zimoun
* gnu/packages/maths.scm (r-desolve): Move from here... * gnu/packages/cran.scm (r-desolve): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-27gnu: r-quadprog: Move to (gnu packages cran).zimoun
* gnu/packages/maths.scm (r-quadprog): Move from here... * gnu/packages/cran.scm (r-quadprog): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-23gnu: wxmaxima: Update to 19.11.1.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 19.11.1.
2019-11-23gnu: r-quadprog: Update to 1.5-8.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-8.
2019-11-23gnu: r-desolve: Update to 1.25.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (r-desolve): Update to 1.25.
2019-11-21Merge branch 'master' into stagingMarius Bakke
2019-11-19gnu: Add minisat.Robert Smith
* gnu/packages/patches/minisat-friend-declaration.patch: New file. * gnu/packages/patches/minisat-install.patch: New file. * gnu/local.mk (dist_patch_DATA): Add both files above. * gnu/packages/maths.scm (minisat): New exported variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-10-21Merge branch 'master' into stagingMarius Bakke
2019-10-20gnu: vc: Update to 1.4.1.Marius Bakke
* gnu/packages/maths.scm (vc): Update to 1.4.1. [native-inputs]: Add VIRTEST and a test data origin. [arguments]: Add phase to copy test data.
2019-10-18Merge branch 'master' into stagingMarius Bakke
2019-10-14gnu: mumps: Build and install shared libraries.Maurice Brémond
* gnu/packages/patches/mumps-shared-libseq.patch, gnu/packages/patches/mumps-shared-mumps.patch, gnu/packages/patches/mumps-shared-pord.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (mumps)[source](patches): Add them. [arguments]: In 'configure' phase, adjust "Makefile.inc" for shared library support. In 'install' phase, install libmpiseq.so when it exists. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2019-10-14gnu: mumps: Update to 5.2.1.Maurice Brémond
* gnu/packages/maths.scm (mumps): Update to 5.2.1. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2019-10-13Merge branch 'master' into stagingMarius Bakke
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