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2020-03-04gnu: SuiteSparse: Update to 5.7.1....* gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Felix Gruber
2020-02-23gnu: z3: Build the Python bindings...* gnu/packages/maths.scm (z3)[arguments]: Add the --python and --pypkgdir flags to configure. To facilitate the latter, add (guix build python-build-system) to #:modules and #:imported-modules. Jakub Kądziołka
2020-02-21gnu: Add vinci....* gnu/packages/maths.scm (vinci): New variable. Andreas Enge
2020-02-10gnu: octave, octave-cli: Update to 5.2.0....* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0. [inputs]: Add bdb. Kei Kebreau
2020-01-31gnu: superlu-dist: Update to 6.2.0....* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0. [source]: Update upstream url. Remove mpi deprecations patch. * gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Eric Bavier
2020-01-31gnu: superlu: Update upstream url....* gnu/packages/maths.scm (superlu)[source,home-page]: Update url. Eric Bavier
2020-01-23gnu: wxmaxima: Update to 20.01.3....* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3. [home-page]: Update URL. Kei Kebreau
2020-01-19gnu: elemental: Update home page....* gnu/packages/maths.scm (elemental)[home-page]: Use repository home page. Tobias Geerinckx-Rice
2020-01-19gnu: petsc: Use HTTPS home page....* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17gnu: Use HTTPS for www.hdfgroup.org....* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS. (hdf-java, h5check)[source]: Likewise. Tobias Geerinckx-Rice
2020-01-17gnu: netcdf: Use HTTPS home page....* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17gnu: scotch: Use HTTPS home page....* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17Update email address for Amin Bandali....* .mailmap: Add name and email addresses for Amin Bandali. * gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm: Update email address for Amin Bandali. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Amin Bandali
2020-01-14gnu: python-slepc4py: Update to 3.11.0....* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0. Paul Garlick
2020-01-14gnu: python-petsc4py: Update to 3.11.0....* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0. Paul Garlick
2020-01-10gnu: hdf5@1.10: Update to 1.10.6....* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6. Tobias Geerinckx-Rice
2020-01-07gnu: lapack: Update to 3.9.0....* gnu/packages/maths.scm (lapack): Update to 3.9.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen
2019-12-13gnu: hdf5@1.10: Update to 1.10.5....* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès
2019-12-06gnu: Add lrslib....* gnu/packages/maths.scm (lrslib): New variable. Andreas Enge
2019-12-04Merge branch 'staging'Marius Bakke
2019-12-01gnu: z3: Update to 4.8.7....* gnu/packages/maths.scm (z3): Update to 4.8.7. Tobias Geerinckx-Rice
2019-12-01gnu: nauty: Update to 2.6r12....* gnu/packages/maths.scm (nauty): Update to 2.6r12. Tobias Geerinckx-Rice
2019-11-28Merge branch 'master' into stagingMarius Bakke
2019-11-27gnu: Remove obsolete import of R build system module....* gnu/packages/maths.scm: Remove import of (guix build-system r). Ricardo Wurmus
2019-11-27gnu: r-subplex: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-subplex): Move from here... * gnu/packages/cran.scm (r-subplex): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-27gnu: r-pracma: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-pracma): Move from here... * gnu/packages/cran.scm (r-pracma): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-27gnu: r-desolve: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-desolve): Move from here... * gnu/packages/cran.scm (r-desolve): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-27gnu: r-quadprog: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-quadprog): Move from here... * gnu/packages/cran.scm (r-quadprog): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-23gnu: wxmaxima: Update to 19.11.1....* gnu/packages/maths.scm (wxmaxima): Update to 19.11.1. Kei Kebreau
2019-11-23gnu: r-quadprog: Update to 1.5-8....* gnu/packages/maths.scm (r-quadprog): Update to 1.5-8. Tobias Geerinckx-Rice
2019-11-23gnu: r-desolve: Update to 1.25....* gnu/packages/maths.scm (r-desolve): Update to 1.25. Tobias Geerinckx-Rice
2019-11-21Merge branch 'master' into stagingMarius Bakke
2019-11-19gnu: Add minisat....* gnu/packages/patches/minisat-friend-declaration.patch: New file. * gnu/packages/patches/minisat-install.patch: New file. * gnu/local.mk (dist_patch_DATA): Add both files above. * gnu/packages/maths.scm (minisat): New exported variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com> Robert Smith
2019-10-21Merge branch 'master' into stagingMarius Bakke
2019-10-20gnu: vc: Update to 1.4.1....* gnu/packages/maths.scm (vc): Update to 1.4.1. [native-inputs]: Add VIRTEST and a test data origin. [arguments]: Add phase to copy test data. Marius Bakke
2019-10-18Merge branch 'master' into stagingMarius Bakke
2019-10-14gnu: mumps: Build and install shared libraries....* gnu/packages/patches/mumps-shared-libseq.patch, gnu/packages/patches/mumps-shared-mumps.patch, gnu/packages/patches/mumps-shared-pord.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (mumps)[source](patches): Add them. [arguments]: In 'configure' phase, adjust "Makefile.inc" for shared library support. In 'install' phase, install libmpiseq.so when it exists. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr> Maurice Brémond
2019-10-14gnu: mumps: Update to 5.2.1....* gnu/packages/maths.scm (mumps): Update to 5.2.1. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr> Maurice Brémond
2019-10-13Merge branch 'master' into stagingMarius Bakke
2019-10-08gnu: mcrl2: Update source url....* gnu/packages/maths.scm (mcrl2): Update source url. Jan Nieuwenhuizen
2019-10-08gnu: OpenBLAS: Update to 0.3.7....* gnu/packages/maths.scm (openblas): Update to 0.3.7. Marius Bakke
2019-10-08gnu: OpenBLAS: Incorporate grafted changes....* gnu/packages/maths.scm (openblas)[replacement]: Remove. [arguments]: Add NUM_THREADS in #:make-flags. (openblas/fixed-num-threads): Remove variable. Marius Bakke
2019-10-08Merge branch 'core-updates'Ludovic Courtès
2019-10-08gnu: maxflow: Use HTTPS home page....* gnu/packages/maths.scm (maxflow)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2019-10-08gnu: maxflow: Correct version to 3.0.5....This won't be picked up by ‘guix package -u’, but the code is identical anyway. By changing this now, fewer installations will fail to upgrade at all if upstream ever release a new <3.4. * gnu/packages/maths.scm (maxflow)[version]: Change to 3.0.5. [source]: Use version tag instead of raw matching commit. Tobias Geerinckx-Rice
2019-10-08gnu: maxflow: Use GIT-FILE-NAME....* gnu/packages/maths.scm (maxflow)[source]: Use GIT-FILE-NAME. Tobias Geerinckx-Rice
2019-10-01Merge branch 'master' into core-updatesLudovic Courtès
2019-09-30gnu: Add mcrl2-minimal....* gnu/packages/maths.scm (mcrl2-minimal): New variable. Jan Nieuwenhuizen
2019-09-30gnu: mcrl2: Update to 201908.0....* gnu/packages/maths.scm (mcrl2): Update to 201908.0. Jan Nieuwenhuizen
2019-09-28gnu: z3: Update to 4.8.6....* gnu/packages/maths.scm (z3): Update to 4.8.6. Tobias Geerinckx-Rice
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