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2020-04-05gnu: octave-cli: Fix build....* gnu/packages/maths.scm (octave-cli)[inputs]: Add LIBJPEG-TURBO. [arguments]: Add "--enable-link-all-dependencies" in #:configure-flags. Marius Bakke
2020-04-04gnu: scotch: Make some inputs native....* gnu/packages/math.scm (scotch)[inputs]: Move flex & bison from here... [native-inputs]: ...to this new field. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Vincent Legoll
2020-04-03gnu: GSL: Remove unnecessary (%current-system) call....* gnu/packages/maths.scm (gsl)[arguments]: Use the let-bound SYSTEM variable instead of %CURRENT-SYSTEM. Marius Bakke
2020-04-03gnu: Add qalculate-gtk....* gnu/packages/maths.scm (qalculate-gtk): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> R Veera Kumar
2020-04-03gnu: Add libqalculate....* gnu/packages/maths.scm (libqalculate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> R Veera Kumar
2020-04-03gnu: GSL: Disable failing tests on i686-linux and aarch64-linux....This follows up commit 7ad3c81240b366b99f29c4ac5f7c42173c91f38a, which enabled tests that were previously disabled on i686, and takes into account new tests with similar issues. While at it, selectively disable tests on aarch64 instead of disabling all tests. * gnu/packages/maths.scm (gsl)[arguments]: On i686 and aarch64, add #:phases. Marius Bakke
2020-03-30Merge branch 'master' into core-updates... Conflicts: gnu/packages/admin.scm gnu/packages/commencement.scm gnu/packages/guile.scm gnu/packages/linux.scm gnu/packages/package-management.scm gnu/packages/pulseaudio.scm gnu/packages/web.scm Marius Bakke
2020-03-29gnu: z3: Fix build determinism....* gnu/packages/maths.scm (z3)[arguments]: Add a phase to set PYTHONHASHSEED=0. Jakub Kądziołka
2020-03-29gnu: Remove more packages deprecated for over almost a year....* gnu/packages/games.scm (armagetron-advanced) (cataclysm-dark-days-ahead, gnubackgammon, l-abbaye-des-morts) (the-battle-for-wesnoth, the-battle-for-wesnoth-server) (project-starfighter, kiki-the-nano-bot, fish-fillets-ng) (dungeon-crawl-stone-soup): Let's forget this ever happened. * gnu/packages/emacs-xyz.scm (geiser, paredit, git-modes/old-name) (magit, magit-svn, haskell-mode, emacs-emms-player-mpv, bbdb) (ert-runner, groovy-emacs-modes): Remove variable. * gnu/packages/engineering.scm (emacs-emms-player-simple-mpv) (emacs-evil-ediff, emacs-evil-mu4e, emacs-wgrep-helm, ao): Likewise. * gnu/packages/finance.scm (monero-core): Likewise. * gnu/packages/gnome.scm (dungeon-crawl-stone-soup-tiles) (tales-of-maj-eyal, battle-tanks, the-legend-of-edgar) (gnome-tweak-tool): Likewise. * gnu/packages/gnuzilla.scm (conkeror): Likewise. * gnu/packages/guile-xyz.scm (mcron2): Likewise. * gnu/packages/image.scm (pngcrunch): Likewise. * gnu/packages/linux.scm (eudev-with-hwdb): Likewise. * gnu/packages/maths.scm (qtoctave): Likewise. * gnu/packages/package-management.scm (guile2.0-guix): Likewise. * gnu/packages/php.scm (php-with-bcmath): Likewise. * gnu/packages/python-xyz.scm (python-kivy-next, python2-kivy-next): Likewise. * gnu/packages/video.scm (livestreamer): Likewise. * gnu/packages/virtualization.scm (lookingglass): Likewise. * gnu/packages/vulkan.scm (vulkan-icd-loader): Likewise. * gnu/packages/syndication.scm (newsbeuter): Likewise. (newsboat)[description]: Remove historical footnote. Tobias Geerinckx-Rice
2020-03-28Update email address and Savannah handle for Amin Bandali....* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address. * build-aux/git-authenticate.scm: Update my Savannah handle. Amin Bandali
2020-03-28gnu: armadillo: Fix typo in description....* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.". Nicolas Goaziou
2020-03-27Merge branch 'master' into core-updates... Conflicts: gnu/packages/icu4c.scm gnu/packages/man.scm gnu/packages/python-xyz.scm guix/scripts/environment.scm guix/scripts/pack.scm guix/scripts/package.scm guix/scripts/pull.scm guix/store.scm Marius Bakke
2020-03-22gnu: wxmaxima: Update to 20.03.1....* gnu/packages/maths.scm (wxmaxima): Update to 20.03.1. Kei Kebreau
2020-03-21Merge branch 'master' into core-updatesMarius Bakke
2020-03-21gnu: hdf-eos2: Use HTTPS home page....* gnu/packages/maths.scm (hdf-eos2)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-18Merge branch 'master' into core-updatesMarius Bakke
2020-03-14Merge branch 'master' into core-updatesMarius Bakke
2020-03-14gnu: suitesparse: Build with cmake-minimal....* gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to CMAKE-MINIMAL. Marius Bakke
2020-03-14gnu: openlibm: Use HTTPS home page....* gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-14gnu: define dune-*-openmpi packages...* gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi, dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi, dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi, dune-localfunctions-openmpi, dune-functions-openmpi, dune-pdelab-openmpi): New variables. (add-openmpi-to-dune-package): New function to add openmpi to the inputs of a dune-* package and replace all dune-* packages in its input with the corresponding dune-*-openmpi package. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2020-03-14gnu: dune-*: remove openmpi dependency...* gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency. [arguments]: remove code to setup openmpi for tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2020-03-12gnu: dune-istl: Build with suitesparse...* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build additional solvers in dune-istl. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2020-03-12gnu: Add dune-subgrid...* gnu/packages/maths.scm (dune-subgrid): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2020-03-12gnu: Add dune-uggrid....* gnu/packages/maths.scm (dune-uggrid): New variable. (dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so that the UGGrid class in dune-grid can be used by packages that have dune-grid as input. (dune-functions)[arguments]: Enable tests that previously weren't built as they require dune-uggrid. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2020-03-12gnu: dune-*: set up MPI for tests...* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl, dune-alugrid): [arguments]: correctly set up MPI instead of disabling tests that require MPI. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2020-03-10Merge branch 'master' into core-updatesMarius Bakke
2020-03-09gnu: speedcrunch: Use HTTPS home page....* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-07gnu: openblas: Use HTTPS home page....* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-06gnu: wxmaxima: Update to 20.02.4....* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4. [arguments]: Enable tests and set #:test-target to "test". [native-inputs]: Add xorg-server-for-tests. Kei Kebreau
2020-03-05gnu: OpenBLAS: Update to 0.3.9....* gnu/packages/maths.scm (openblas): Update to 0.3.9. Marius Bakke
2020-03-04gnu: SuiteSparse: Update to 5.7.1....* gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Felix Gruber
2020-03-04Merge branch 'master' into core-updatesMarius Bakke
2020-02-23gnu: z3: Build the Python bindings...* gnu/packages/maths.scm (z3)[arguments]: Add the --python and --pypkgdir flags to configure. To facilitate the latter, add (guix build python-build-system) to #:modules and #:imported-modules. Jakub Kądziołka
2020-02-21gnu: Add vinci....* gnu/packages/maths.scm (vinci): New variable. Andreas Enge
2020-02-15gnu: OpenBLAS: Update to 0.3.8....* gnu/packages/maths.scm (openblas): Update to 0.3.8. Marius Bakke
2020-02-14Merge branch 'master' into core-updatesMarius Bakke
2020-02-10gnu: octave, octave-cli: Update to 5.2.0....* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0. [inputs]: Add bdb. Kei Kebreau
2020-02-03Merge branch 'staging' into core-updatesMarius Bakke
2020-01-31gnu: superlu-dist: Update to 6.2.0....* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0. [source]: Update upstream url. Remove mpi deprecations patch. * gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Eric Bavier
2020-01-31gnu: superlu: Update upstream url....* gnu/packages/maths.scm (superlu)[source,home-page]: Update url. Eric Bavier
2020-01-23Merge branch 'staging' into core-updatesMarius Bakke
2020-01-23gnu: wxmaxima: Update to 20.01.3....* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3. [home-page]: Update URL. Kei Kebreau
2020-01-22gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'....* gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to LIBJPEG-TURBO. * gnu/packages/admin.scm (testdisk)[inputs]: Likewise. * gnu/packages/algebra.scm (giac)[inputs]: Likewise. * gnu/packages/animation.scm (synfig)[inputs]: Likewise. * gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise. * gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise. * gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise. * gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise. * gnu/packages/display-managers.scm (slim)[inputs]: Likewise. * gnu/packages/ebook.scm (fbreader)[inputs]: Likewise. * gnu/packages/emacs.scm (emacs)[inputs]: Likewise. * gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise. * gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise. * gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise. * gnu/packages/freedesktop.scm (weston)[inputs]: Likewise. * gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame, eureka, ioquake3)[inputs]: Likewise. * gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest, fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise. * gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise. * gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise. (ghostscript)[inputs, native-inputs]: Likewise. * gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise. * gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise. * gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise. * gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise. * gnu/packages/graphics.scm (blender, blender-2.79, openimageio, openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise. * gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise. * gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise. * gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise. * gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl, insight-toolkit)[inputs]: Likewise. * gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise. * gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage, vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise. * gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise. * gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11, openjdk12)[inputs]: Likewise. * gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise. * gnu/packages/kodi.scm (kodi)[inputs]: Likewise. * gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise. * gnu/packages/mate.scm (atril, eom)[inputs]: Likewise. * gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise. * gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise. * gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise. * gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin, rawtherapee)[inputs]: Likewise. * gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise. * gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise. * gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise. * gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise. * gnu/packages/scheme.scm (racket)[inputs]: Likewise. * gnu/packages/scribus.scm (scribus)[inputs]: Likewise. * gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise. (guile-sdl)[native-inputs]: Likewise. * gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise. * gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise. * gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise. * gnu/packages/upnp.scm (readymedia)[inputs]: Likewise. * gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise. * gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise. * gnu/packages/web.scm (netsurf)[inputs]: Likewise. * gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise. * gnu/packages/wine.scm (wine)[inputs]: Likewise. * gnu/packages/wv.scm (wv)[inputs]: Likewise. * gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise. * gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise. * gnu/packages/xfce.scm (tumbler)[inputs]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise. * gnu/packages/xorg.scm (xpra)[inputs]: Likewise. Marius Bakke
2020-01-21Merge branch 'staging' into core-updatesMarius Bakke
2020-01-19gnu: elemental: Update home page....* gnu/packages/maths.scm (elemental)[home-page]: Use repository home page. Tobias Geerinckx-Rice
2020-01-19gnu: petsc: Use HTTPS home page....* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17gnu: Use HTTPS for www.hdfgroup.org....* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS. (hdf-java, h5check)[source]: Likewise. Tobias Geerinckx-Rice
2020-01-17gnu: netcdf: Use HTTPS home page....* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17gnu: scotch: Use HTTPS home page....* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17Update email address for Amin Bandali....* .mailmap: Add name and email addresses for Amin Bandali. * gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm: Update email address for Amin Bandali. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Amin Bandali