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2017-09-01gnu: netcdf: Fix reproducibility issue; remove unneeded references....* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded 'Configured On' date; truncate reference to compiler store item. Thomas Danckaert
2017-09-01gnu: hdf4: Avoid unneeded store references to compilers....* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to truncate hashes of compiler store items. Thomas Danckaert
2017-09-01gnu: hdf5: Avoid unneeded store references to compilers....* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch "libhdf5.settings", removing references to the C/C++/Fortran compilers. Thomas Danckaert
2017-09-01gnu: hdf5: Add output for fortran interface....* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran. [outputs]: Add "fortran". [arguments]: Enable Fortran compilation; add "/lib" directory of the fortran output to the runpath of the Fortran libs; add a 'split phase to move all Fortran-related files to the the Fortran output store location. Thomas Danckaert
2017-08-31gnu: Add pt-scotch32....* gnu/packages/maths.scm (pt-scotch32): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul Garlick
2017-08-31gnu: Add "scotch32"....* gnu/packages/maths.scm (scotch32): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul Garlick
2017-08-30gnu: coda: Update to 2.18.2....* gnu/packages/maths.scm (coda): Update to 2.18.2. Thomas Danckaert
2017-08-29Update e-mail for Kei Kebreau....* .mailmap: Map kei@openmailbox.org to current address. * gnu/local.mk: Replace kei@openmailbox.org to current address. * gnu/packages/backup.scm: Likewise. * gnu/packages/calendar.scm: Likewise. * gnu/packages/check.scm: Likewise. * gnu/packages/compression.scm: Likewise. * gnu/packages/documentation.scm: Likewise. * gnu/packages/emacs.scm: Likewise. * gnu/packages/fltk.scm: Likewise. * gnu/packages/freedesktop.scm: Likewise. * gnu/packages/game-development.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/gnustep.scm: Likewise. * gnu/packages/gtk.scm: Likewise. * gnu/packages/hexedit.scm: Likewise. * gnu/packages/image.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/xfce.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/tcl.scm: Likewise. * gnu/packages/textutils.scm: Likewise. * gnu/packages/video.scm: Likewise. * gnu/packages/w3m.scm: Likewise. * gnu/packages/web.scm: Likewise. * gnu/packages/web-browsers.scm: Likewise. * gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise. Kei Kebreau
2017-08-26Merge branch 'core-updates'Marius Bakke
2017-08-21gnu: z3: Build Python bindings....* gnu/packages/maths.scm (z3): Add python bindings. [build-system]: Change to cmake-build-system. [arguments]: Remove "changedir" phase. Add "bootstrap" and "make-test-z3" phases; replace the "check" phase. Add #:configure-flags. Remove #:test-target. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Theodoros Foradis
2017-08-21Merge branch 'master' into core-updatesMarius Bakke
2017-08-16gnu: hdf4: Fix building on aarch64....* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve detection and support for aarch64-linux. Efraim Flashner
2017-08-15Merge branch 'master' into core-updatesMark H Weaver
2017-08-13gnu: wxmaxima: Update to 17.05.1....* gnu/packages/maths.scm (wxmaxima): Update to 17.05.1. [arguments]: Put "autoconf" phase after the "unpack" phase. Fix indentation. Kei Kebreau
2017-08-09Merge branch 'master' into core-updatesMark H Weaver
2017-08-09gnu: dealii: Update to 8.5.0....* gnu/packages/maths.scm (dealii): Update to 8.5.0. [arguments]: Delete 'hint-example-prefix phase, which would need adjusting for this version. Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'. Adjust configuration flags. Eric Bavier
2017-08-09gnu: suitesparse: Update to 4.5.5....* gnu/packages/maths.scm (suitesparse): Update to 4.5.5. [source]: Add 'modules' and 'snippet' field to remove bundled source. [arguments]: Remove 'prepare-out' phase. Adjust #:make-flags for metis. Make build parallel, since it now appears to be safe. [inputs]: Add metis. Eric Bavier
2017-08-09gnu: suitesparse: Use modify-phases....* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases. Eric Bavier
2017-08-09gnu: petsc, slepc: Use 'parallel-job-count'....* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to override default unlimited '-j'. (petsc)[arguments]: Scrub build machine cores from installed files in 'clean-local-references' phase. Eric Bavier
2017-08-09gnu: slepc: Update to 3.7.4....* gnu/packages/maths.scm (slepc): Update to 3.7.4. [source]: Use direct source link. Remove 'file-name' field. Eric Bavier
2017-08-09gnu: petsc: Update to 3.7.6....* gnu/packages/maths.scm (petsc): Update to 3.7.6. Eric Bavier
2017-08-07Merge branch 'master' into core-updatesMark H Weaver
2017-08-07gnu: cubicle: Fix evaluation....* gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from (gnu packages base). Marius Bakke
2017-08-06Merge branch 'master' into core-updatesMark H Weaver
2017-08-05gnu: Add cubicle....* gnu/packages/maths.scm (cubicle): New variable. Julien Lepiller
2017-08-03gnu: r-pracma: Update to 2.0.7....* gnu/packages/maths.scm (r-pracma): Update to 2.0.7. Ricardo Wurmus
2017-08-03gnu: vc: Limit to x86_64 and i686....* gnu/packages/maths.scm (vc)[supported-systems]: New field. Efraim Flashner
2017-08-02gnu: hdf4: Update to 4.12.13....* gnu/packages/maths.scm (hdf4): Update to 4.12.13. Thomas Danckaert
2017-08-01Merge branch 'master' into core-updatesMarius Bakke
2017-07-29gnu: Add z3....* gnu/packages/maths.scm (z3): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Theodoros Foradis
2017-07-28Merge branch 'master' into core-updatesMarius Bakke
2017-07-26gnu: glpk: Update to 4.63....* gnu/packages/maths.scm (glpk): Update to 4.63. Efraim Flashner
2017-07-25gnu: maxima: Ensure binutils are available at runtime....* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax. Modify 'post-install' phase. Kei Kebreau
2017-07-25Revert "gnu: maxima: Ensure gcc is available at runtime."...This reverts commit f2fa86cc82b5941bde63b666337eea59aa609e55. Commit 5ea8dbf0c906d51779ba0cf775ec9967f5f42382 fixes the underlying issue in GNU Common Lisp. Kei Kebreau
2017-07-23Merge branch 'master' into core-updatesLeo Famulari
2017-07-20gnu: lapack: Fix hash of release 3.7.1...Apparently the release was modified (cleaned-up) in-place. An issue was opened at https://github.com/Reference-LAPACK/lapack-release/issues/4. * gnu/packages/maths.scm (lapack): Fix sha256 hash. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Maxim Cournoyer
2017-07-10Merge branch 'master' into core-updatesLeo Famulari
2017-07-08gnu: wxmaxima: Update to 17.05.0....* gnu/packages/maths.scm (wxmaxima): Update to 17.05.0. [source]: Update URL and add file-name. [native-inputs]: Add autoconf, automake and gettext-minimal. [arguments]: Add 'autoconf' phase. Kei Kebreau
2017-07-07gnu: maxima: Ensure gcc is available at runtime....* gnu/packages/maths.scm (maxima)[inputs]: Add gcc. [arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase. Kei Kebreau
2017-06-30gnu: itpp: Use texlive-tiny and ghostscript....* gnu/packages/maths.scm (itpp)[native-inputs]: Replace texlive-minimal with texlive-tiny; add ghostscript. Ricardo Wurmus
2017-06-30gnu: gnuplot: Use texlive-tiny....* gnu/packages/maths.scm (gnuplot)[native-inputs]: Replace texlive-minimal with texlive-tiny. Ricardo Wurmus
2017-06-29Merge branch 'master' into core-updatesLeo Famulari
2017-06-29gnu: lapack: Install libraries to PREFIX/lib, not PREFIX/lib64....This fixes a regression introduced in ef39a17717a10a7f406730258acfdb07934c7255, which would break python-scipy ("undefined reference to `zungqr_'"). * gnu/packages/maths.scm (lapack)[arguments]: Add "-DCMAKE_INSTALL_LIBDIR" to #:configure-flags. Ludovic Courtès
2017-06-26gnu: scotch: Build in 64-bit mode on 64-bit machines....* gnu/packages/maths.scm (scotch)[arguments] <configure>: Add "INTSIZE64" CPP flag. Ludovic Courtès
2017-06-26gnu: lapack: Build with LAPACKE_WITH_TMG=ON....* gnu/packages/maths.scm (lapack)[arguments]: Pass "-DLAPACKE_WITH_TMG=ON". Ludovic Courtès
2017-06-26gnu: lapack: Update to 3.7.1....* gnu/packages/maths.scm (lapack): Update to 3.7.1. Ludovic Courtès
2017-06-26Merge branch 'master' into core-updatesMark H Weaver
2017-06-25gnu: hdf5: Update to 1.8.19....* gnu/packages/maths.scm (hdf5): Update to 1.8.19. [source]: Update uri. Thomas Danckaert
2017-06-21gnu: gsl: Update to 2.4....* gnu/packages/maths.scm (gsl): Update to 2.4. [arguments]: Remove #:parallel-tests?. Arun Isaac
2017-06-20gnu: Move contents of zip module into compression module....* gnu/packages/zip.scm (zip, unzip, zziplib, perl-zip): Move to... * gnu/packages/compression.scm: ...here. * gnu/packages/zip.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Unregister deleted file. * po/packages/POTFILES.in: Unregister deleted file. * gnu/packages/{audio, avr, bioinformatics, busybox, cdrom, ci, compression, docbook, documentation, fonts, fpga, game-development, games, gl, gnome, gnuzilla, graphics, guile, haskell, image, java, kodi, ldc, libreoffice, markup, maths, mc, monitoring, music, php, pretty-print, python, scheme, smalltalk, statistics, synergy, tex, textutils, video, web-browsers, xml, zip}.scm, guix/build-system/{ant, font}.scm, guix/{download, packages}.scm: Adapt module import. Arun Isaac
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