| Age | Commit message (Expand) | Author |
|---|
| 2022-05-03 | gnu: sundials-openmpi: Add HYPRE dependency....* gnu/packages/maths.scm (sundials-openmpi)[propagated-inputs]: Add
hypre-openmpi.
[arguments]<#:configure-flags>: Add -DENABLE_HYPRE, -DHYPRE_INCLUDE_DIR
and -DHYPRE_LIBRARY_DIR.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-05-03 | gnu: sundials: Fix various issues....This commit fixes various issues. First, some of SUNDIALS's CMake
variables were renamed at some point between 5.2.0 and 5.7.0, in
particular KLU_ENABLE, which was changed to ENABLE_KLU. Since
sundials-julia is essentially SUNDIALS 5.2.0, its configure flags need
to be different from those of the sundials package. Second, commit
61bcd648ca215e3d8e75b3a3f49bfb94d66f7c79, which updated SUNDIALS to
6.1.1, accidentally completely disabled PETSc support for
sundials-openmpi (PETSc is supported only with MPI) by removing the
relevant configure flags. Third, SUNDIALS's default index size is
64 bits, but PETSc's is 32 bits, and they need to be the same; this
issue is discussed in the next three paragraphs.
The default index size in SUNDIALS 3.1.1 (which was the sundials
package's version previous to the aforementioned commit) was also
64 bits (though it was configured through the SUNDIALS_INDEX_TYPE CMake
variable, which could take the values INT64_T or INT32_T), but
SUNDIALS's configure script didn't warn of any incompatibility with
PETSc's 32-bit indices. I don't know if this was an accidental omission
from the configure script or if SUNDIALS's index size didn't have to
correspond to PETSc's at the time.
Keeping 64-bit indices in SUNDIALS would require adding a package for
PETSc with 64-bit indices (using the --with-64-bit-indices configure
flag), possibly named petsc64-openmpi (to follow the style of the SCOTCH
packages, i.e., scotch, scotch32, etc., though there the unadorned
package name represents the 64-bit version, unlike the unadorned petsc),
which would in turn require a package for METIS with 64-bit
indices (using IDXTYPEWIDTH=64). However, SUNDIALS is an optional
dependency of deal.II, both of which have PETSc as an optional
dependency, and deal.II's index size (which defaults to 32 bits) must
match PETSc's. In other words, the current deal.II package can build
with SUNDIALS only if SUNDIALS has 32-bit indices.
Furthermore, users needing 64-bit indices in SUNDIALS probably also need
them in PETSc and other libraries. If and when 64-bit indices are deemed
necessary, we can add all the package variations at once (for SUNDIALS,
PETSc, METIS, deal.II and any others).
* gnu/packages/maths.scm (sundials)[source]: Reuse version in URL.
[native-inputs]: Capitalize and punctuate comment.
[inputs]: Remove petsc, now unnecessary gfortran, and obsolete
comment. Move TODO item to sundials-openmpi.
[arguments]<#:configure-flags>: Add -DSUNDIALS_INDEX_SIZE=32 to match
PETSc's 32-bit indices. Remove obsolete -DEXAMPLES_ENABLE_F77,
-DEXAMPLES_ENABLE_F90 and -DFCMIX_ENABLE. Mention new but currently
unusable -DBUILD_FORTRAN_MODULE_INTERFACE and
-DEXAMPLES_ENABLE_F2003. Rename KLU_ENABLE to ENABLE_KLU.
(sundials-openmpi): Use package/inherit.
[inputs]: Move openmpi and petsc-openmpi from here...
[propagated-inputs]: ...to here. Clarify comment.
[arguments]<#:configure-flags>: Add -DENABLE_PETSC and -DPETSC_DIR, the
equivalents of which were accidentally removed in commit
61bcd648ca215e3d8e75b3a3f49bfb94d66f7c79.
<#:phases>: Replace a tab with spaces.
[synopsis]: Replace OpenMPI with MPI to conform to other package
synopses.
(sundials-julia)[inputs]: Add gfortran.
[arguments]<#:configure-flags>: Set only, and manually, -DCMAKE_C_FLAGS,
-DSUNDIALS_INDEX_SIZE, -DKLU_ENABLE, -DKLU_INCLUDE_DIR,
-DKLU_LIBRARY_DIR and -DLAPACK_ENABLE instead of inheriting from the
sundials package, because some of SUNDIALS's CMake variables have
changed name.
[synopsis]: Capitalize “LAPACK”.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-05-03 | gnu: petsc-openmpi: Fix header inclusions....* gnu/packages/maths.scm (petsc-openmpi)[arguments]: Add
'patch-header-inclusions' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-26 | gnu: nomad-optimizer: Disable failing test....* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Disable the
examples/advanced/library/PSDMads test.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: lrslib: Update to 7.2....* gnu/packages/maths.scm (lrslib): Update to 7.2.
| Andreas Enge |
| 2022-04-19 | gnu: nomad-optimizer: Fix some tests....* gnu/packages/maths.scm (nomad-optimizer)[arguments]<#:phases>
[fix-sources-for-tests]: Enable the pipefail option in the (generated)
script that runs tests. Enable the basic batch example3 test. Fix the
advanced library FixedVariable test (and seemingly the neighbor PSDMads
test). Expand some comments.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: nomad-optimizer: Update to 4.2.0....* gnu/packages/maths.scm (nomad-optimizer): Update to 4.2.0.
[arguments]: Accommodate updated build process.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: nomad-optimizer: Remove trailing booleans....* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Remove trailing
booleans.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: nomad-optimizer: Remove input labels....* gnu/packages/maths.scm (nomad-optimizer)[native-inputs]: Remove
labels.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: gmsh: Update to 4.9.5....* gnu/packages/maths.scm (gmsh): Update to 4.9.5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-19 | gnu: gnuplot: Update to 5.4.3....* gnu/packages/maths.scm (gnuplot): Update to 5.4.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2022-04-14 | gnu: sundials: Remove input labels....* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
| Ludovic Courtès |
| 2022-04-14 | gnu: sundials: Update to 6.1.1....* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags. Change "MPI_ENABLE" to "ENABLE_MPI".
| Ludovic Courtès |
| 2022-03-31 | gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux....* gnu/packages/maths.scm (gsl)[arguments]: Force an autotools bootstrap
when cross-compiling to riscv64-linux.
[native-inputs]: Add autoconf, automake and libtool when cross-compiling
to riscv64-linux.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Arun Isaac |
| 2022-03-18 | gnu: petsc-openmpi: Remove input labels....* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Use 'modify-inputs'.
[arguments]: Adjust label name for hdf5.
| Ludovic Courtès |
| 2022-03-18 | gnu: petsc-openmpi: Fix compilation with Scotch 7.0....* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add SCOTCH:METIS.
[arguments]: Add 'adjust-pt-scotch-library-names' phase.
| Ludovic Courtès |
| 2022-03-07 | gnu: scotch: Explicitly pass "-DINTSIZE" to CMake....Previously, the 'scotch' and 'pt-scotch' packages would use the default
int size, which turned out to be 32 on x86_64-linux instead of 64 as it
used to be in Scotch 6.x.
* gnu/packages/maths.scm (scotch)[arguments]: Add "-DINTSIZE" to #:configure-flags.
(scotch32)[arguments]: Likewise.
(pt-scotch)[arguments]: Likewise.
(pt-scotch32)[arguments]: Likewise.
| Ludovic Courtès |
| 2022-03-02 | gnu: hypre: Remove input labels....* gnu/packages/maths.scm (hypre)[native-inputs, inputs]: Remove labels.
(hypre-openmpi)[inputs]: Use 'modify-inputs'.
| Ludovic Courtès |
| 2022-03-02 | gnu: texlive-latex-wrapfig: Rename to "texlive-wrapfig"....* gnu/packages/tex.scm (texlive-latex-wrapfig): Rename to...
(texlive-wrapfig): ... this.
(texlive-latex-wrapfig): Define as deprecated.
* gnu/packages/maths.scm (hypre)[native-inputs]: Use new name.
* gnu/packages/python-xyz.scm (python-ipython-documentation)
(python-numpy-documentation): Likewise.
| Ludovic Courtès |
| 2022-03-02 | gnu: why3: Update to 1.4.1....* gnu/packages/maths.scm (why3): Update to 1.4.1.
| Julien Lepiller |
| 2022-02-15 | gnu: Remove unneeded uses of 'libiconv'....iconv is part of glibc, there is no need to add it as input.
* gnu/packages/accessibility.scm (brltty)[inputs]: Remove LIBICONV.
* gnu/packages/compression.scm (innoextract)[inputs]: Likewise.
* gnu/packages/haskell-apps.scm (darcs)[inputs]: Likewise.
* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Likewise.
* gnu/packages/linphone.scm (liblinphone)[inputs]: Likewise.
* gnu/packages/mail.scm (mailutils)[inputs]: Likewise.
* gnu/packages/maths.scm (libqalculate)[inputs]: Likewise.
* gnu/packages/pep.scm (pep-engine)[inputs]: Likewise.
* gnu/packages/vim.scm (neovim)[inputs]: Likewise.
* gnu/packages/wget.scm (wget2)[inputs]: Likewise.
* gnu/packages/telegram.scm (telegram-desktop)[inputs]: Likewise.
* gnu/packages/video.scm (transcode)[native-inputs]: Likewise.
| Marius Bakke |
| 2022-02-15 | gnu: mumps: Remove input labels....* gnu/packages/maths.scm (mumps)[inputs]: Remove labels.
[arguments]: Adjust 'configure' phase to not rely on the "mpi" and
"blas" labels.
(mumps-metis, mumps-openmpi, mumps-metis-openmpi): Use 'modify-inputs'.
| Ludovic Courtès |
| 2022-02-15 | gnu: scotch: Update to 7.0.1....* gnu/packages/maths.scm (scotch): Update to 7.0.1.
[source]: Switch to 'git-fetch'.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags. Remove #:make-flags. Remove
'chdir-to-src', 'configure', and 'build-esmumps' phases.
[properties]: Update 'release-monitoring-url' property.
(scotch32, pt-scotch, pt-scotch32): Update accordingly, replacing now
useless build phases with #:configure-flags.
(scotch-shared, pt-scotch-shared): Mark as deprecated.
(mumps)[arguments]: In 'configure' phase, use '-lesmumps'
unconditionally, since that's now how pt-scotch calls it.
| Ludovic Courtès |
| 2022-02-11 | gnu: opencascade-occt: Update to 7.6.0....* gnu/packages/maths.scm (opencascade-occt): Update to 7.6.0.
[native-inputs]: Add fontconfig.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Petr Hodina |
| 2022-02-05 | gnu: superlu: Update to 5.3.0....* gnu/packages/maths.scm (superlu): Update to 5.3.0.
[source]: Adjust to new url.
| Eric Bavier |
| 2022-02-01 | gnu: openblas: Fix building on riscv64-linux....* gnu/packages/maths.scm (openblas)[arguments]: Adjust make-flags on
riscv64-linux to target the correct architecture when building for
riscv64-linux.
| Efraim Flashner |
| 2022-01-28 | gnu: Properly deprecate texlive-generic-ulem....* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/maths.scm (hypre): Apply deprecation.
* gnu/packages/tex.scm (texlive-generic-ulem): Fix typo in deprecation
command.
| Nicolas Goaziou |
| 2022-01-28 | gnu: Remove occurrences of deprecated texlive-latex-capt-of....* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-numpy-documentation):
(python-ipython-documentation): Use texlive-capt-of instead of texlive-latex-capt-of.
| Nicolas Goaziou |
| 2022-01-22 | gnu: jacal: Update to 1c7....* gnu/packages/patches/jacal-fix-texinfo.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete this.
* gnu/packages/maths.scm (jacal)[source]: Delete this patch.
[version]: Update to 1c7.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
| Morgan Smith |
| 2022-01-20 | gnu: dune-pdelab: Update to 2.7.1....* gnu/packages/maths.scm (dune-pdelab): Update to 2.7.1.
[version]: Use `git-version` to compute the version string.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-20 | gnu: dune-functions: Update to 2.7.1....* gnu/packages/maths.scm (dune-functions): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-20 | gnu: dune-typetree: Update to 2.7.1....* gnu/packages/maths.scm (dune-typetree): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-20 | gnu: dune-subgrid: Update to 2.7.1....* gnu/packages/maths.scm (dune-subgrid): Update to 2.7.1.
[version]: Use `git-version` to compute the version string.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-20 | gnu: dune-alugrid: Update to 2.7.1....* gnu/packages/maths.scm (dune-alugrid): Update to 2.7.1.
[version]: Use `git-version` to compute the version string.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-20 | gnu: dune-localfunctions: Update to 2.7.1....* gnu/packages/maths.scm (dune-localfunctions): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-20 | gnu: dune-istl: Update to 2.7.1....* gnu/packages/maths.scm (dune-istl): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
[source](patches) Remove patch that is no longer needed.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove above patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-20 | gnu: dune-grid: Update to 2.7.1....* gnu/packages/maths.scm (dune-grid): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-20 | gnu: dune-uggrid: Update to 2.7.1....* gnu/packages/maths.scm (dune-uggrid): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-20 | gnu: dune-geometry: Update to 2.7.1....* gnu/packages/maths.scm (dune-geometry): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-20 | gnu: dune-common: Update to 2.7.1....* gnu/packages/maths.scm (dune-common): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-20 | gnu: Modernize add-openmpi-to-dune-package...* gnu/packages/maths.scm (add-openmpi-to-dune-package): Use
modify-inputs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-12 | gnu: Remove python2-cvxopt....* gnu/packages/maths.scm (python2-cvxopt): Remove variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Felix Gruber |
| 2022-01-12 | gnu: python-cvxopt: Update to 1.2.7....* gnu/packages/maths.scm (python-cvxopt): Update to 1.2.7.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Felix Gruber |
| 2022-01-11 | gnu: ceres: Update to 2.0.0....* gnu/packages/maths.scm (ceres): Update to 2.0.0.
[inputs]: Use simplified format.
(ceres-solver-benchmarks)[phases]: Add schur_eliminator_benchmark.
Replace autodiff_cost_function_benchmark with new autodiff_benchmarks.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Felix Gruber |
| 2022-01-11 | gnu: dealii: Update to 9.3.2....* gnu/packages/maths.scm (dealii): Update to 9.3.2.
[source]: Add dealii-fix-compiliation-with-boost-1.78.patch and
dealii-fix-sundials.patch.
[inputs]: Use simplified format.
[native-inputs]: Use simplified format.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
New file.
* gnu/packages/patches/dealii-fix-sundials.patch: New file.
* gnu/local.mk: Add new patch files.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Felix Gruber |
| 2022-01-01 | gnu: gsl: Add 'tunable?' property....* gnu/packages/maths.scm (gsl)[properties]: New field.
| Ludovic Courtès |
| 2022-01-01 | gnu: Add ceres-solver-benchmarks....* gnu/packages/maths.scm (ceres-solver-benchmarks): New variable.
| Ludovic Courtès |
| 2022-01-01 | gnu: ceres-solver: Mark as tunable....* gnu/packages/maths.scm (ceres)[properties]: New field.
| Ludovic Courtès |
| 2021-12-30 | gnu: Capitalize beginning of synopsis....* gnu/packages/admin.scm (hungrycat)[synopsis]: Captalize.
* gnu/packages/cobol.scm (gnucobol)[synopsis]: Likewise.
* gnu/packages/cpp.scm (clipper)[synopsis]: Likewise.
* gnu/packages/crates-graphics.scm (rust-piston-texture-0.8)[synopsis]:
Likewise.
* gnu/packages/crates-io.scm (rust-alloc-stdlib-0.2, rust-atom-0.3,
rust-oorandom-11.1, rust-r2d2, rust-scheduled-thread-pool-0.2,
rust-takeable-option-0.4, rust-ttf-parser-0.12)[synopsis]: Likewise.
* gnu/packages/games.scm (roguebox-adventures)[synopsis]: Likewise.
* gnu/packages/gl.scm (libepoxy)[synopsis]: Likewise.
* gnu/packages/gnome-xyz.scm (arc-theme)[synopsis]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-cborg-json, ghc-rio)[synopsis]: Likewise.
* gnu/packages/installers.scm (mingw-path)[synopsis]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-cl-utilities)[synopsis]: Likewise.
* gnu/packages/maths.scm (coda)[synopsis]: Likewise.
* gnu/packages/ocaml.scm (ocaml4.07-ppx-sexp-message)[synopsis]: Likewise.
* gnu/packages/perl6.scm (perl6-json)[synopsis]: Likewise.
* gnu/packages/python-xyz.scm (python-markuppy,
python-febelfin-coda)[synopsis]: Likewise.
* gnu/packages/statistics.scm (r-magrittr)[synopsis]: Likewise.
* gnu/packages/terminals.scm (sakura)[synopsis]: Likewise.
| Vagrant Cascadian |
| 2021-12-30 | gnu: Remove leading article from synopsis....* gnu/packages/admin.scm (hungrycat)[synopsis]: Remove leading article.
* gnu/packages/cobol.scm (gnucobol)[synopsis]: Likewise.
* gnu/packages/cpp.scm (clipper)[synopsis]: Likewise.
* gnu/packages/crates-graphics.scm (rust-piston-texture-0.8)[synopsis]:
Likewise.
* gnu/packages/crates-io.scm (rust-alloc-stdlib-0.2, rust-atom-0.3,
rust-oorandom-11.1, rust-r2d2, rust-scheduled-thread-pool-0.2,
rust-takeable-option-0.4, rust-ttf-parser-0.12,
rust-svd-parser-0.9)[synopsis]: Likewise.
* gnu/packages/games.scm (roguebox-adventures)[synopsis]: Likewise.
* gnu/packages/gl.scm (libepoxy)[synopsis]: Likewise.
* gnu/packages/gnome-xyz.scm (arc-theme)[synopsis]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-cborg-json, ghc-rio)[synopsis]: Likewise.
* gnu/packages/installers.scm (mingw-path)[synopsis]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-cl-utilities)[synopsis]: Likewise.
* gnu/packages/lisp.scm (gcl, clisp)[synopsis]: Likewise.
* gnu/packages/maths.scm (coda)[synopsis]: Likewise.
* gnu/packages/ocaml.scm (ocaml4.07-ppx-sexp-message)[synopsis]: Likewise.
* gnu/packages/perl6.scm (perl6-json)[synopsis]: Likewise.
* gnu/packages/python-xyz.scm (python-pari-jupyter, python-markuppy,
python-febelfin-coda)[synopsis]: Likewise.
* gnu/packages/scheme.scm (mit-scheme)[synopsis]: Likewise.
* gnu/packages/statistics.scm (r-magrittr)[synopsis]: Likewise.
* gnu/packages/terminals.scm (sakura)[synopsis]: Likewise.
| Vagrant Cascadian |
