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2020-03-12gnu: dune-*: set up MPI for tests...* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl, dune-alugrid): [arguments]: correctly set up MPI instead of disabling tests that require MPI. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2020-03-10Merge branch 'master' into core-updatesMarius Bakke
2020-03-09gnu: speedcrunch: Use HTTPS home page....* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-07gnu: openblas: Use HTTPS home page....* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-06gnu: wxmaxima: Update to 20.02.4....* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4. [arguments]: Enable tests and set #:test-target to "test". [native-inputs]: Add xorg-server-for-tests. Kei Kebreau
2020-03-05gnu: OpenBLAS: Update to 0.3.9....* gnu/packages/maths.scm (openblas): Update to 0.3.9. Marius Bakke
2020-03-04gnu: SuiteSparse: Update to 5.7.1....* gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Felix Gruber
2020-03-04Merge branch 'master' into core-updatesMarius Bakke
2020-02-23gnu: z3: Build the Python bindings...* gnu/packages/maths.scm (z3)[arguments]: Add the --python and --pypkgdir flags to configure. To facilitate the latter, add (guix build python-build-system) to #:modules and #:imported-modules. Jakub Kądziołka
2020-02-21gnu: Add vinci....* gnu/packages/maths.scm (vinci): New variable. Andreas Enge
2020-02-15gnu: OpenBLAS: Update to 0.3.8....* gnu/packages/maths.scm (openblas): Update to 0.3.8. Marius Bakke
2020-02-14Merge branch 'master' into core-updatesMarius Bakke
2020-02-10gnu: octave, octave-cli: Update to 5.2.0....* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0. [inputs]: Add bdb. Kei Kebreau
2020-02-03Merge branch 'staging' into core-updatesMarius Bakke
2020-01-31gnu: superlu-dist: Update to 6.2.0....* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0. [source]: Update upstream url. Remove mpi deprecations patch. * gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Eric Bavier
2020-01-31gnu: superlu: Update upstream url....* gnu/packages/maths.scm (superlu)[source,home-page]: Update url. Eric Bavier
2020-01-23Merge branch 'staging' into core-updatesMarius Bakke
2020-01-23gnu: wxmaxima: Update to 20.01.3....* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3. [home-page]: Update URL. Kei Kebreau
2020-01-22gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'....* gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to LIBJPEG-TURBO. * gnu/packages/admin.scm (testdisk)[inputs]: Likewise. * gnu/packages/algebra.scm (giac)[inputs]: Likewise. * gnu/packages/animation.scm (synfig)[inputs]: Likewise. * gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise. * gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise. * gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise. * gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise. * gnu/packages/display-managers.scm (slim)[inputs]: Likewise. * gnu/packages/ebook.scm (fbreader)[inputs]: Likewise. * gnu/packages/emacs.scm (emacs)[inputs]: Likewise. * gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise. * gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise. * gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise. * gnu/packages/freedesktop.scm (weston)[inputs]: Likewise. * gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame, eureka, ioquake3)[inputs]: Likewise. * gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest, fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise. * gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise. * gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise. (ghostscript)[inputs, native-inputs]: Likewise. * gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise. * gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise. * gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise. * gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise. * gnu/packages/graphics.scm (blender, blender-2.79, openimageio, openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise. * gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise. * gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise. * gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise. * gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl, insight-toolkit)[inputs]: Likewise. * gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise. * gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage, vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise. * gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise. * gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11, openjdk12)[inputs]: Likewise. * gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise. * gnu/packages/kodi.scm (kodi)[inputs]: Likewise. * gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise. * gnu/packages/mate.scm (atril, eom)[inputs]: Likewise. * gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise. * gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise. * gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise. * gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin, rawtherapee)[inputs]: Likewise. * gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise. * gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise. * gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise. * gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise. * gnu/packages/scheme.scm (racket)[inputs]: Likewise. * gnu/packages/scribus.scm (scribus)[inputs]: Likewise. * gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise. (guile-sdl)[native-inputs]: Likewise. * gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise. * gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise. * gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise. * gnu/packages/upnp.scm (readymedia)[inputs]: Likewise. * gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise. * gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise. * gnu/packages/web.scm (netsurf)[inputs]: Likewise. * gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise. * gnu/packages/wine.scm (wine)[inputs]: Likewise. * gnu/packages/wv.scm (wv)[inputs]: Likewise. * gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise. * gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise. * gnu/packages/xfce.scm (tumbler)[inputs]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise. * gnu/packages/xorg.scm (xpra)[inputs]: Likewise. Marius Bakke
2020-01-21Merge branch 'staging' into core-updatesMarius Bakke
2020-01-19gnu: elemental: Update home page....* gnu/packages/maths.scm (elemental)[home-page]: Use repository home page. Tobias Geerinckx-Rice
2020-01-19gnu: petsc: Use HTTPS home page....* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17gnu: Use HTTPS for www.hdfgroup.org....* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS. (hdf-java, h5check)[source]: Likewise. Tobias Geerinckx-Rice
2020-01-17gnu: netcdf: Use HTTPS home page....* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17gnu: scotch: Use HTTPS home page....* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17Update email address for Amin Bandali....* .mailmap: Add name and email addresses for Amin Bandali. * gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm: Update email address for Amin Bandali. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Amin Bandali
2020-01-15Merge branch 'master' into core-updatesMarius Bakke
2020-01-14gnu: python-slepc4py: Update to 3.11.0....* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0. Paul Garlick
2020-01-14gnu: python-petsc4py: Update to 3.11.0....* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0. Paul Garlick
2020-01-11Merge branch 'master' into core-updatesMarius Bakke
2020-01-10gnu: hdf5@1.10: Update to 1.10.6....* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6. Tobias Geerinckx-Rice
2020-01-07gnu: lapack: Update to 3.9.0....* gnu/packages/maths.scm (lapack): Update to 3.9.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen
2019-12-31Merge remote-tracking branch 'master' into core-updates.Mathieu Othacehe
2019-12-13gnu: hdf5@1.10: Update to 1.10.5....* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès
2019-12-12Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2019-12-06gnu: Add lrslib....* gnu/packages/maths.scm (lrslib): New variable. Andreas Enge
2019-12-05Merge branch 'master' into core-updatesMarius Bakke
2019-12-04Merge branch 'staging'Marius Bakke
2019-12-01gnu: z3: Update to 4.8.7....* gnu/packages/maths.scm (z3): Update to 4.8.7. Tobias Geerinckx-Rice
2019-12-01gnu: nauty: Update to 2.6r12....* gnu/packages/maths.scm (nauty): Update to 2.6r12. Tobias Geerinckx-Rice
2019-11-28Merge branch 'master' into stagingMarius Bakke
2019-11-27gnu: Remove obsolete import of R build system module....* gnu/packages/maths.scm: Remove import of (guix build-system r). Ricardo Wurmus
2019-11-27gnu: r-subplex: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-subplex): Move from here... * gnu/packages/cran.scm (r-subplex): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-27gnu: r-pracma: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-pracma): Move from here... * gnu/packages/cran.scm (r-pracma): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-27gnu: r-desolve: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-desolve): Move from here... * gnu/packages/cran.scm (r-desolve): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-27gnu: r-quadprog: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-quadprog): Move from here... * gnu/packages/cran.scm (r-quadprog): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-26gnu: gsl: Update to 2.6....* gnu/packages/maths.scm (gsl): Update to 2.6. [source]: Remove patch. * gnu/packages/patches/gsl-test-i686.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2019-11-23gnu: wxmaxima: Update to 19.11.1....* gnu/packages/maths.scm (wxmaxima): Update to 19.11.1. Kei Kebreau
2019-11-23gnu: r-quadprog: Update to 1.5-8....* gnu/packages/maths.scm (r-quadprog): Update to 1.5-8. Tobias Geerinckx-Rice
2019-11-23gnu: r-desolve: Update to 1.25....* gnu/packages/maths.scm (r-desolve): Update to 1.25. Tobias Geerinckx-Rice