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2021-08-12Merge branch 'master' into core-updates-frozen... Conflicts: gnu/packages/algebra.scm gnu/packages/games.scm gnu/packages/golang.scm gnu/packages/kerberos.scm gnu/packages/mail.scm gnu/packages/python.scm gnu/packages/ruby.scm gnu/packages/scheme.scm gnu/packages/tex.scm gnu/packages/tls.scm gnu/packages/version-control.scm Marius Bakke
2021-08-01Merge branch 'master' into core-updates-frozenMarius Bakke
2021-07-29Merge branch 'master' into core-updates-frozen... Conflicts: gnu/packages/bioinformatics.scm gnu/packages/cmake.scm gnu/packages/curl.scm gnu/packages/emacs-xyz.scm gnu/packages/gpodder.scm gnu/packages/music.scm gnu/packages/patches/glibc-bootstrap-system.patch gnu/packages/python-xyz.scm gnu/packages/shells.scm gnu/packages/statistics.scm Marius Bakke
2021-07-28gnu: openlibm: Fix cross-compiling....* gnu/packages/maths.scm (openlibm)[arguments]: Add configure-flag to use cc-for-target. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jean-Baptiste Volatier
2021-07-28gnu: openlibm: Update to 0.7.4....* gnu/packages/maths.scm (openlibm): Update to 0.7.4. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jean-Baptiste Volatier
2021-07-29gnu: Add FP16....* gnu/packages/patches/fp16-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (fp16): New variable. Ludovic Courtès
2021-07-29gnu: Add FXDiv....* gnu/packages/maths.scm (fxdiv): New variable. * gnu/packages/patches/fxdiv-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2021-08-10gnu: dealii-openmpi: Add Trilinos dependency....* gnu/packages/maths.scm (trilinos-for-dealii-openmpi): New variable. (dealii-openmpi)[propagated-inputs]: Add trilinos-for-dealii-openmpi. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2021-08-05gnu: Add optizelle....* gnu/packages/maths.scm (optizelle): New variable. Paul Garlick
2021-08-04gnu: Add bitwise....* gnu/packages/maths.scm (bitwise): New variable. Co-authored-by: jgart <jgart@dismail.de> Co-authored-by: Julien Lepiller <julien@lepiller.eu> Co-authored-by: Ryan Prior <rprior@protonmail.com> Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Guix Together
2021-07-26gnu: gsegrafix: Update to 1.0.7.2....This keeps this ancient package on life support for now. * gnu/packages/maths.scm (gsegrafix): Update to 1.0.7.2. [source]: Download from gsegrafix-experimental's Savannah. [arguments]: Drop obsolete LDFLAGS. Disable static library build. [inputs]: Remove libgnomecanvas, libbonoboui, libgnomeui, libgnomeprintui, and popt. Add glib and gtk+. Tobias Geerinckx-Rice
2021-07-25gnu: openblas: Use dynamic arch support for aarch64-linux....* gnu/packages/maths.scm (openblas)[arguments]: Adjust make-flags to build multiple architecture optimized versions for aarch64-linux. Efraim Flashner
2021-07-24gnu: Use 'search-input-file' when looking for .jar files....* gnu/packages/bioinformatics.scm (java-picard-1.113): Use 'search-input-file' when looking for *.jar. (fastqc): Likewise. * gnu/packages/groovy.scm (groovy): Likewise. * gnu/packages/java.scm (ant-bootstrap): Likewise. (ecj-bootstrap): Likewise. (java-cisd-base): Likewise. (java-cisd-args4j): Likewise. (java-cisd-jhdf5): Likewise. (java-native-access): Likewise. (java-native-access-platform): Likewise. * gnu/packages/maths.scm (hdf-java): Likewise. Ludovic Courtès
2021-07-24gnu: Use 'search-input-file' when looking for executables....* gnu/packages/admin.scm (isc-dhcp): Use 'search-input-file' when looking for executables. * gnu/packages/audio.scm (ableton-link): Likewise. * gnu/packages/benchmark.scm (fio): Likewise. * gnu/packages/bioinformatics.scm (roary): Likewise. (ngless): Likewise. * gnu/packages/boost.scm (boost-for-irods): Likewise. * gnu/packages/bootloaders.scm (grub): Likewise. (grub-efi): Likewise. * gnu/packages/chemistry.scm (inchi): Likewise. * gnu/packages/dictionaries.scm (ding): Likewise. * gnu/packages/dlang.scm (ldc): Likewise. * gnu/packages/education.scm (childsplay): Likewise. * gnu/packages/emacs-xyz.scm (emacs-hyperbole): Likewise. (emacs-haskell-mode): Likewise. (emacs-auctex): Likewise. (emacs-ggtags): Likewise. (emacs-graphviz-dot-mode): Likewise. (emacs-flycheck-grammalecte): Likewise. (emacs-counsel-notmuch): Likewise. (emacspeak): Likewise. (emacs-exwm): Likewise. (emacs-exwm-x): Likewise. (emacs-treemacs): Likewise. (emacs-telega): Likewise. (emacs-exiftool): Likewise. * gnu/packages/emulators.scm (higan): Likewise. * gnu/packages/engineering.scm (freehdl): Likewise. (librepcb): Likewise. * gnu/packages/entr.scm (entr): Likewise. * gnu/packages/file-systems.scm (libeatmydata): Likewise. (xfstests): Likewise. (mergerfs): Likewise. (mergerfs-tools): Likewise. * gnu/packages/finance.scm (monero-gui): Likewise. * gnu/packages/flashing-tools.scm (flashrom): Likewise. * gnu/packages/fontutils.scm (fontforge): Likewise. * gnu/packages/game-development.scm (python2-renpy): Likewise. * gnu/packages/games.scm (opensurge): Likewise. (xboard): Likewise. (hyperrogue): Likewise. (flare-game): Likewise. (chessx): Likewise. * gnu/packages/geo.scm (grass): Likewise. * gnu/packages/glib.scm (glib): Likewise. * gnu/packages/gnome.scm (mm-common): Likewise. (network-manager-openvpn): Likewise. (network-manager-vpnc): Likewise. (network-manager-openconnect): Likewise. (apostrophe): Likewise. * gnu/packages/gnupg.scm (pius): Likewise. (jetring): Likewise. * gnu/packages/gnuzilla.scm (icedove): Likewise. * gnu/packages/golang.scm (go-1.4): Likewise. * gnu/packages/graphviz.scm (xdot): Likewise. * gnu/packages/guile-xyz.scm (jupyter-guile-kernel): Likewise. * gnu/packages/haskell-xyz.scm (ghc-hindent): Likewise. * gnu/packages/ibus.scm (ibus): Likewise. * gnu/packages/image.scm (phockup): Likewise. * gnu/packages/irc.scm (quassel): Likewise. * gnu/packages/java.scm (drip): Likewise. (ant-bootstrap): Likewise. (tla2tools): Likewise. * gnu/packages/julia.scm (julia): Likewise. * gnu/packages/less.scm (lesspipe): Likewise. * gnu/packages/libreoffice.scm (libreoffice): Likewise. * gnu/packages/linux.scm (fuse): Likewise. (lm-sensors): Likewise. (bluez): Likewise. (fakeroot): Likewise. (inputattach): Likewise. * gnu/packages/lisp-xyz.scm (sbcl-cl-diskspace): Likewise. * gnu/packages/lisp.scm (lisp-repl-core-dumper): Likewise. * gnu/packages/lua.scm (fennel): Likewise. * gnu/packages/lxde.scm (spacefm): Likewise. * gnu/packages/mail.scm (public-inbox): Likewise. * gnu/packages/maths.scm (hdf-java): Likewise. (maxima): Likewise. (frama-c): Likewise. * gnu/packages/messaging.scm (libgadu): Likewise. * gnu/packages/music.scm (denemo): Likewise. (curseradio): Likewise. * gnu/packages/netpbm.scm (netpbm): Likewise. * gnu/packages/networking.scm (blueman): Likewise. (squid): Likewise. (aircrack-ng): Likewise. * gnu/packages/node.scm (node): Likewise. (node-llparse-frontend-bootstrap): Likewise. (node-llparse-bootstrap): Likewise. (llhttp-bootstrap): Likewise. (node-lts): Likewise. * gnu/packages/ocaml.scm (ocaml-4.11): Likewise. (opam): Likewise. (ocaml-graph): Likewise. * gnu/packages/orpheus.scm (orpheus): Likewise. * gnu/packages/password-utils.scm (password-store): Likewise. * gnu/packages/python.scm (pypy3): Likewise. * gnu/packages/qt.scm (qt5ct): Likewise. * gnu/packages/radio.scm (libosmo-dsp): Likewise. * gnu/packages/ruby.scm (ruby-pandoc-ruby): Likewise. * gnu/packages/rust.scm (rust-1.30): Likewise. * gnu/packages/screen.scm (byobu): Likewise. * gnu/packages/statistics.scm (r-with-tests): Likewise. * gnu/packages/suckless.scm (surf): Likewise. * gnu/packages/syndication.scm (gfeeds): Likewise. * gnu/packages/telephony.scm (mumble): Likewise. * gnu/packages/terminals.scm (alacritty): Likewise. * gnu/packages/tex.scm (texlive-bin): Likewise. * gnu/packages/uml.scm (plantuml): Likewise. * gnu/packages/version-control.scm (python-git-multimail): Likewise. (gitolite): Likewise. (hg-commitsigs): Likewise. (git-when-merged): Likewise. (git-imerge): Likewise. (gita): Likewise. * gnu/packages/video.scm (you-get): Likewise. * gnu/packages/vim.scm (eovim): Likewise. * gnu/packages/virtualization.scm (qemu): Likewise. (virt-manager): Likewise. (criu): Likewise. * gnu/packages/vpn.scm (strongswan): Likewise. (xl2tpd): Likewise. * gnu/packages/wm.scm (i3lock-fancy): Likewise. * gnu/packages/wxwidgets.scm (python-wxpython): Likewise. (python2-wxpython): Likewise. * gnu/packages/xdisorg.scm (autorandr): Likewise. * gnu/packages/xorg.scm (hackneyed-x11-cursors): Likewise. (v86d): Likewise. (mkfontdir): Likewise. (xpra): Likewise. Ludovic Courtès
2021-07-24gnu: Use 'search-input-file' when searching for Automake files....* gnu/packages/audio.scm (libsbsms)[arguments]: Use 'search-input-file' when searching for Automake file. * gnu/packages/maths.scm (hdf-java): Likewise. Ludovic Courtès
2021-07-23gnu: gsl: Update to 2.7....* gnu/packages/maths.scm (gsl): Update to 2.7. [arguments]: Remove trailing #t's. Marius Bakke
2021-07-20gnu: dealii: Update to 9.3.1 and clean up....The cleanup notably: * Builds and installs the documentation into a separate doc output (in the process moving around some files erroneously installed into the root directory); and * Removes unnecessary inputs and moves some inputs into propagated-inputs (the candidates of which were determined with a search for "include.*LIBNAME" in include/deal.II). * gnu/packages/maths.scm (dealii): Reword comments. [version]: Update to 9.3.1. [outputs]: New field including doc output. [native-inputs]: New field. [inputs]: Sort them. Remove p4est (deal.II interfaces with it only when MPI is enabled). Move boost, suitesparse and tbb to... [propagated-inputs]: ...here. New field including hdf5, which is actually supported in deal.II without MPI. [arguments]<#:tests?>: New argument. The tests were not being run before anyway. <#:configure-flags>[-DDEAL_II_COMPONENT_DOCUMENTATION]: New flag. [-DDEAL_II_DOCREADME_RELDIR]: New flag. Prevents the LICENSE.md, README.md, detailed.log and summary.log files from being installed in the root directory (though note that the logs are removed in the new remove-build-logs phase). [-DDEAL_II_DOCHTML_RELDIR]: New flag. [-DDEAL_II_COMPILE_EXAMPLES]: New flag. [-DDEAL_II_EXAMPLES_RELDIR]: New flag. Prevents the examples directory from being installed in the root directory. [-DCMAKE_POSITION_INDEPENDENT_CODE]: Remove flag. The issue has been resolved. <#:phases>{remove-build-logs}: New phase. [home-page]: Add trailing slash. (dealii-openmpi): Use package/inherit. [inputs]: Sort them. Remove mumps-metis-openmpi (deal.II no longer interfaces with MUMPS). Move hdf5-parallel-openmpi, openmpi, p4est-openmpi, petsc-openmpi and slepc-openmpi to... [propagated-inputs]: ...here. New field. [arguments]<#:configure-flags>: Rename cf variable to flags. <#:phases>{mpi-setup}: Remove phase which is unused because the tests are disabled. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2021-07-19gnu: Add nomad-optimizer....* gnu/packages/maths.scm (nomad-optimizer): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2021-07-18Merge branch 'master' into core-updatesLudovic Courtès
2021-07-16gnu: Add blitz....* gnu/packages/maths.scm (blitz): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Ivan Gankevich
2021-07-13gnu: gmsh: Sort inputs alphabetically....* gnu/packages/maths.scm (gmsh)[propagated-inputs]: Sort alphabetically. Efraim Flashner
2021-07-13gnu: gmsh: Simply downloading source logic....* gnu/packages/maths.scm (gmsh)[source]: Use string-replace-substring. Efraim Flashner
2021-07-13gnu: gmsh: Update to 4.8.4....* gnu/packages/maths.scm (gmsh): Update to 4.8.4. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Paul A. Patience
2021-07-12gnu: gmsh: Install Python API in standard directory....* gnu/packages/maths.scm (gmsh)[imported-modules]: New argument. [modules]: New argument. [phases]: New argument. [inputs]: Add python. Paul Garlick
2021-07-08gnu: mcrl2: Update to 202106.0....* gnu/packages/maths.scm (mcrl2): Update to 202106.0. Jan (janneke) Nieuwenhuizen
2021-07-07gnu: openblas: Fix building on powerpc64le-linux....* gnu/packages/maths.scm (openblas)[arguments]: Add make-flags to enable building for powerpc64le-linux. Efraim Flashner
2021-07-07gnu: openblas: Fix building on armhf-linux....* gnu/packages/maths.scm (openblas)[arguments]: Add make-flag to set target architecture. Efraim Flashner
2021-07-02gnu: atlas: Extend build time-out....* gnu/packages/maths.scm (atlas)[properties]: Quadruple the timeout. Tobias Geerinckx-Rice
2021-07-02gnu: gnuplot: Update to 5.4.2....* gnu/packages/maths.scm (gnuplot): Update to 5.4.2. Tobias Geerinckx-Rice
2021-06-29gnu: scotch: Update to 6.1.1....* gnu/packages/maths.scm (scotch): Update to 6.1.1. [native-inputs]: Add GFORTRAN. [arguments]: Set 'FC' in 'Makefile.in'. (scotch32)[arguments]: Likewise. (scotch-shared)[arguments]: Likewise. Ludovic Courtès
2021-06-29gnu: scotch: Add 'release-monitoring-url' property....* gnu/packages/maths.scm (scotch)[properties]: New field. Ludovic Courtès
2021-06-25gnu: suitesparse: Update to 5.10.1....* gnu/packages/maths.scm (suitesparse): Update to 5.10.1. Ludovic Courtès
2021-06-25gnu: suitesparse: Link against OpenBLAS rather than LAPACK....* gnu/packages/maths.scm (suitesparse)[inputs]: Replace LAPACK with OPENBLAS. [arguments]: Add "BLAS"and "LAPACK" to #:make-flags. Ludovic Courtès
2021-06-24gnu: maxima: Update to 5.45.1....* gnu/packages/maths.scm (maxima): Update to 5.45.1. [home-page]: Follow redirect. Kei Kebreau
2021-06-23Merge branch 'master' into core-updates...Conflicts: gnu/packages/cups.scm gnu/packages/python-web.scm gnu/packages/web.scm guix/build/maven/pom.scm Tobias Geerinckx-Rice
2021-06-22gnu: petsc: Link against OpenBLAS rather than LAPACK....OpenBLAS performs better than LAPACK, the reference implementation. This is also consistent with the choice of BLAS/LAPACK implementations made in most other packages. * gnu/packages/maths.scm (petsc)[inputs]: Replace LAPACK by OPENBLAS. [arguments]: Pass "--with-openblas=1". Ludovic Courtès
2021-06-20gnu: why3: Update to 1.3.3....* gnu/packages/maths.scm (why3): Update to 1.3.3. [arguments]: Adjust for newer ocaml-num. Julien Lepiller
2021-06-19Merge branch 'master' into core-updates...Note: this merge actually changes the 'curl' and 'python-attrs' derivations, as part of solving caf4a7a2770ef4d05a6e18f40d602e51da749ddc and 12964df69a99de6190422c752fef65ef813f3b6b respectively. 4604d43c0e (gnu: gnutls@3.6.16: Fix cross-compilation.) was ignored because it cannot currently be tested. Conflicts: gnu/local.mk gnu/packages/aidc.scm gnu/packages/boost.scm gnu/packages/curl.scm gnu/packages/nettle.scm gnu/packages/networking.scm gnu/packages/python-xyz.scm gnu/packages/tls.scm Marius Bakke
2021-06-14gnu: wxmaxima: Update to 21.05.2....* gnu/packages/maths.scm (wxmaxima): Update to 21.05.2. Kei Kebreau
2021-06-14gnu: maxima: Update to 5.45.0....* gnu/packages/maths.scm (maxima): Update to 5.45.0. Kei Kebreau
2021-06-14gnu: Rename qtbase to qtbase-5....This change was automated via the following command: $ git ls-files | xargs sed -i 's/,qtbase)/,qtbase-5)/g' $ git ls-files | xargs sed -i 's/inherit qtbase)/inherit qtbase-5)/g' $ git ls-files | xargs sed -i 's/package-version qtbase)/package-version qtbase-5)/g' $ git checkout etc # to clear some spurious changes This is done so the qtbase package can be upgraded to version 6 in the following commit. Maxim Cournoyer
2021-06-12gnu: qalculate-gtk: Update to 3.19.0....* gnu/packages/maths.scm (qalculate-gtk): Update to 3.19.0. [phases]: Remove 'add-pot-file. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Jack Hill
2021-06-12gnu: libqalculate: Update to 3.19.0....* gnu/packages/maths (libqalculate): Update to 3.19.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Jack Hill
2021-06-06Merge branch 'master' into core-updates... Conflicts: gnu/local.mk gnu/packages/algebra.scm gnu/packages/bioinformatics.scm gnu/packages/curl.scm gnu/packages/docbook.scm gnu/packages/emacs-xyz.scm gnu/packages/maths.scm gnu/packages/plotutils.scm gnu/packages/python-web.scm gnu/packages/python-xyz.scm gnu/packages/radio.scm gnu/packages/readline.scm gnu/packages/tls.scm gnu/packages/xml.scm gnu/packages/xorg.scm Marius Bakke
2021-06-06gnu: hypre: Update to 2020.0....* gnu/packages/maths.scm (hypre): Update to 2020.0. [source](modules, snippet): Remove. [native-inputs]: Remove PERL, NETPBM and GHOSTSCRIPT. Add PYTHON, PYTHON-SPHINX and PYTHON-BREATHE. Add TEXLIVE-ADJUSTBOX, TEXLIVE-AMSFONTS, TEXLIVE-CAPTION, TEXLIVE-ETOOLBOX, TEXLIVE-JKNAPPEN, TEXLIVE-SECTSTY, TEXLIVE-TEX-GYRE, TEXLIVE-WASY, TEXLIVE-XCOLOR, TEXLIVE-GENERIC-LISTOFITEMS, TEXLIVE-GENERIC-ULEM, TEXLIVE-LATEX-CAPT-OF, TEXLIVE-LATEX-CMAP, TEXLIVE-LATEX-COLORTBL, TEXLIVE-LATEX-ETOC, TEXLIVE-LATEX-FANCYHDR, TEXLIVE-LATEX-FANCYVRB, TEXLIVE-LATEX-FLOAT, TEXLIVE-LATEX-FNCYCHAP, TEXLIVE-LATEX-FRAMED, TEXLIVE-LATEX-GEOMETRY, TEXLIVE-LATEX-HANGING, TEXLIVE-LATEX-MULTIROW, TEXLIVE-LATEX-NATBIB, TEXLIVE-LATEX-NEEDSPACE, TEXLIVE-LATEX-NEWUNICODECHAR, TEXLIVE-LATEX-PARSKIP, TEXLIVE-LATEX-STACKENGINE, TEXLIVE-LATEX-TABULARY, TEXLIVE-LATEX-TITLESEC, TEXLIVE-LATEX-TOCLOFT, TEXLIVE-LATEX-UPQUOTE, TEXLIVE-LATEX-VARWIDTH, TEXLIVE-LATEX-WASYSYM, and TEXLIVE-LATEX-WRAPFIG to TEXLIVE-UPDMAP.CFG. [arguments]: Adjust doc build target and installation phase. Remove trailing #t's. Marius Bakke
2021-06-02gnu: Add frama-c....* gnu/packages/maths.scm (frama-c): New variable. Julien Lepiller
2021-06-02gnu: Add why3....* gnu/packages/maths.scm (why3): New variable. Julien Lepiller
2021-05-28gnu: ipopt: Update to 3.13.4...* gnu/packages/maths.scm (ipopt): Update to 3.13.4, update URL. [license]: Change to LICENSE:EPL2.0. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Eric Brown
2021-05-28gnu: Add cbc....* gnu/packages/maths.scm (cbc): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Eric Brown
2021-05-25gnu: qhull: Build position independent....* gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to build code position independent. Efraim Flashner
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