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2020-02-23gnu: z3: Build the Python bindings...* gnu/packages/maths.scm (z3)[arguments]: Add the --python and --pypkgdir flags to configure. To facilitate the latter, add (guix build python-build-system) to #:modules and #:imported-modules. Jakub Kądziołka
2020-02-21gnu: Add vinci....* gnu/packages/maths.scm (vinci): New variable. Andreas Enge
2020-02-15gnu: OpenBLAS: Update to 0.3.8....* gnu/packages/maths.scm (openblas): Update to 0.3.8. Marius Bakke
2020-02-14Merge branch 'master' into core-updatesMarius Bakke
2020-02-10gnu: octave, octave-cli: Update to 5.2.0....* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0. [inputs]: Add bdb. Kei Kebreau
2020-02-03Merge branch 'staging' into core-updatesMarius Bakke
2020-01-31gnu: superlu-dist: Update to 6.2.0....* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0. [source]: Update upstream url. Remove mpi deprecations patch. * gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Eric Bavier
2020-01-31gnu: superlu: Update upstream url....* gnu/packages/maths.scm (superlu)[source,home-page]: Update url. Eric Bavier
2020-01-23Merge branch 'staging' into core-updatesMarius Bakke
2020-01-23gnu: wxmaxima: Update to 20.01.3....* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3. [home-page]: Update URL. Kei Kebreau
2020-01-22gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'....* gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to LIBJPEG-TURBO. * gnu/packages/admin.scm (testdisk)[inputs]: Likewise. * gnu/packages/algebra.scm (giac)[inputs]: Likewise. * gnu/packages/animation.scm (synfig)[inputs]: Likewise. * gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise. * gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise. * gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise. * gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise. * gnu/packages/display-managers.scm (slim)[inputs]: Likewise. * gnu/packages/ebook.scm (fbreader)[inputs]: Likewise. * gnu/packages/emacs.scm (emacs)[inputs]: Likewise. * gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise. * gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise. * gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise. * gnu/packages/freedesktop.scm (weston)[inputs]: Likewise. * gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame, eureka, ioquake3)[inputs]: Likewise. * gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest, fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise. * gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise. * gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise. (ghostscript)[inputs, native-inputs]: Likewise. * gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise. * gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise. * gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise. * gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise. * gnu/packages/graphics.scm (blender, blender-2.79, openimageio, openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise. * gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise. * gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise. * gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise. * gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl, insight-toolkit)[inputs]: Likewise. * gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise. * gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage, vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise. * gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise. * gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11, openjdk12)[inputs]: Likewise. * gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise. * gnu/packages/kodi.scm (kodi)[inputs]: Likewise. * gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise. * gnu/packages/mate.scm (atril, eom)[inputs]: Likewise. * gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise. * gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise. * gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise. * gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin, rawtherapee)[inputs]: Likewise. * gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise. * gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise. * gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise. * gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise. * gnu/packages/scheme.scm (racket)[inputs]: Likewise. * gnu/packages/scribus.scm (scribus)[inputs]: Likewise. * gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise. (guile-sdl)[native-inputs]: Likewise. * gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise. * gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise. * gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise. * gnu/packages/upnp.scm (readymedia)[inputs]: Likewise. * gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise. * gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise. * gnu/packages/web.scm (netsurf)[inputs]: Likewise. * gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise. * gnu/packages/wine.scm (wine)[inputs]: Likewise. * gnu/packages/wv.scm (wv)[inputs]: Likewise. * gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise. * gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise. * gnu/packages/xfce.scm (tumbler)[inputs]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise. * gnu/packages/xorg.scm (xpra)[inputs]: Likewise. Marius Bakke
2020-01-21Merge branch 'staging' into core-updatesMarius Bakke
2020-01-19gnu: elemental: Update home page....* gnu/packages/maths.scm (elemental)[home-page]: Use repository home page. Tobias Geerinckx-Rice
2020-01-19gnu: petsc: Use HTTPS home page....* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17gnu: Use HTTPS for www.hdfgroup.org....* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS. (hdf-java, h5check)[source]: Likewise. Tobias Geerinckx-Rice
2020-01-17gnu: netcdf: Use HTTPS home page....* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17gnu: scotch: Use HTTPS home page....* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-01-17Update email address for Amin Bandali....* .mailmap: Add name and email addresses for Amin Bandali. * gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm: Update email address for Amin Bandali. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Amin Bandali
2020-01-15Merge branch 'master' into core-updatesMarius Bakke
2020-01-14gnu: python-slepc4py: Update to 3.11.0....* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0. Paul Garlick
2020-01-14gnu: python-petsc4py: Update to 3.11.0....* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0. Paul Garlick
2020-01-11Merge branch 'master' into core-updatesMarius Bakke
2020-01-10gnu: hdf5@1.10: Update to 1.10.6....* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6. Tobias Geerinckx-Rice
2020-01-07gnu: lapack: Update to 3.9.0....* gnu/packages/maths.scm (lapack): Update to 3.9.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen
2019-12-31Merge remote-tracking branch 'master' into core-updates.Mathieu Othacehe
2019-12-13gnu: hdf5@1.10: Update to 1.10.5....* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès
2019-12-12Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2019-12-06gnu: Add lrslib....* gnu/packages/maths.scm (lrslib): New variable. Andreas Enge
2019-12-05Merge branch 'master' into core-updatesMarius Bakke
2019-12-04Merge branch 'staging'Marius Bakke
2019-12-01gnu: z3: Update to 4.8.7....* gnu/packages/maths.scm (z3): Update to 4.8.7. Tobias Geerinckx-Rice
2019-12-01gnu: nauty: Update to 2.6r12....* gnu/packages/maths.scm (nauty): Update to 2.6r12. Tobias Geerinckx-Rice
2019-11-28Merge branch 'master' into stagingMarius Bakke
2019-11-27gnu: Remove obsolete import of R build system module....* gnu/packages/maths.scm: Remove import of (guix build-system r). Ricardo Wurmus
2019-11-27gnu: r-subplex: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-subplex): Move from here... * gnu/packages/cran.scm (r-subplex): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-27gnu: r-pracma: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-pracma): Move from here... * gnu/packages/cran.scm (r-pracma): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-27gnu: r-desolve: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-desolve): Move from here... * gnu/packages/cran.scm (r-desolve): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-27gnu: r-quadprog: Move to (gnu packages cran)....* gnu/packages/maths.scm (r-quadprog): Move from here... * gnu/packages/cran.scm (r-quadprog): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-11-26gnu: gsl: Update to 2.6....* gnu/packages/maths.scm (gsl): Update to 2.6. [source]: Remove patch. * gnu/packages/patches/gsl-test-i686.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2019-11-23gnu: wxmaxima: Update to 19.11.1....* gnu/packages/maths.scm (wxmaxima): Update to 19.11.1. Kei Kebreau
2019-11-23gnu: r-quadprog: Update to 1.5-8....* gnu/packages/maths.scm (r-quadprog): Update to 1.5-8. Tobias Geerinckx-Rice
2019-11-23gnu: r-desolve: Update to 1.25....* gnu/packages/maths.scm (r-desolve): Update to 1.25. Tobias Geerinckx-Rice
2019-11-21Merge branch 'master' into stagingMarius Bakke
2019-11-19gnu: Add minisat....* gnu/packages/patches/minisat-friend-declaration.patch: New file. * gnu/packages/patches/minisat-install.patch: New file. * gnu/local.mk (dist_patch_DATA): Add both files above. * gnu/packages/maths.scm (minisat): New exported variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com> Robert Smith
2019-10-21Merge branch 'master' into stagingMarius Bakke
2019-10-20gnu: vc: Update to 1.4.1....* gnu/packages/maths.scm (vc): Update to 1.4.1. [native-inputs]: Add VIRTEST and a test data origin. [arguments]: Add phase to copy test data. Marius Bakke
2019-10-18Merge branch 'master' into stagingMarius Bakke
2019-10-14gnu: mumps: Build and install shared libraries....* gnu/packages/patches/mumps-shared-libseq.patch, gnu/packages/patches/mumps-shared-mumps.patch, gnu/packages/patches/mumps-shared-pord.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (mumps)[source](patches): Add them. [arguments]: In 'configure' phase, adjust "Makefile.inc" for shared library support. In 'install' phase, install libmpiseq.so when it exists. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr> Maurice Brémond
2019-10-14gnu: mumps: Update to 5.2.1....* gnu/packages/maths.scm (mumps): Update to 5.2.1. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr> Maurice Brémond
2019-10-13Merge branch 'master' into stagingMarius Bakke