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2019-11-16gnu: openmpi: Silence UCX warnings when running tests....* gnu/packages/mpi.scm (%openmpi-setup): Set "UCX_LOG_LEVEL". Ludovic Courtès
2019-11-15Revert "gnu: openmpi: Pass explicit "--with-*" configure flags."...This reverts commit eaa52b5baa8fbb26a79890561d0c40344d1e1bf3, which would lead to build failures on systems other than x86_64-linux. Ludovic Courtès
2019-11-15gnu: openmpi: Fix typo....* gnu/packages/mpi.scm (openmpi)[inputs]: For UCX, check the supported systems of UCX, not PSM2. Ludovic Courtès
2019-11-15gnu: openmpi: Raise the priority of the PSM2 component....This allows us to get better performance by default on machines with OmniPath hardware. * gnu/packages/patches/openmpi-psm2-priority.patch: New file. * gnu/packages/mpi.scm (openmpi)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2019-11-15gnu: openmpi, slurm: Switch to hwloc 2.x....* gnu/packages/mpi.scm (openmpi)[inputs]: Switch to HWLOC-2. * gnu/packages/parallel.scm (slurm)[inputs]: Likewise. Ludovic Courtès
2019-11-15gnu: hwloc: Update to 2.1.0....* gnu/packages/mpi.scm (hwloc-2.0): Rename to... (hwloc-2): ... this. Update to 2.1.0 (hwloc-2.0): Define as deprecated. * gnu/packages/opencl.scm (pocl)[inputs]: Adjust accordingly. Ludovic Courtès
2019-11-15gnu: Add Intel MPI Benchmarks....* gnu/packages/mpi.scm (intel-mpi-benchmarks): New variable. Ludovic Courtès
2019-11-15gnu: openmpi: Pass explicit "--with-*" configure flags....* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-ucx", "--with-psm", and "--with-psm2". Ludovic Courtès
2019-11-08gnu: python-mpi4py: Update to 3.0.3....* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.3. Tobias Geerinckx-Rice
2019-10-15gnu: openmpi: Add dependency on UCX when supported....* gnu/packages/mpi.scm (openmpi)[inputs]: Add UCX conditionally. Ludovic Courtès
2019-10-10gnu: openmpi: Update to 4.0.2....* gnu/packages/mpi.scm (openmpi): Update to 4.0.2. Ludovic Courtès
2019-07-14gnu: Adjust uses of C{,PLUS}_INCLUDE_PATH for GCC 7....These variables are no longer set in the build environment by default. GCC still respects these search paths and treats them as "system headers" so we can continue to use them, just not expect them to be available. * gnu/packages/mpi.scm (openmpi)[arguments]: Do not attempt to read from C_INCLUDE_PATH, nor CPLUS_INCLUDE_PATH. * gnu/packages/games.scm (kiki)[arguments]: Likewise. * gnu/packages/networking.scm (hcxtools)[arguments]: Likewise. * gnu/packages/synergy.scm (synergy)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (gemma, sailfish)[arguments]: Likewise. * gnu/packages/maths.scm (dune-alugrid)[arguments]: Likewise. Marius Bakke
2019-06-21gnu: python-mpi4py: Update to 3.0.2....* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.2. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Paul Garlick
2019-04-16gnu: openmpi: Update to ....* gnu/packages/mpi.scm (openmpi): Update to . mpi openmpi Tobias Geerinckx-Rice
2019-03-18gnu: Add java-openmpi....* gnu/packages/mpi.scm (java-openmpi): New variable. Ricardo Wurmus
2019-02-20gnu: openmpi: Let configure enable PSM based on inputs....This fixes OpenMPI builds on systems not supported by the PSM packages. * gnu/packages/mpi.scm (openmpi)[arguments]: Remove '--enable-psm' and '--enable-psm2' from #:configure-flags. Eric Bavier
2019-02-18gnu: python-mpi4py: Update to 3.0.1....* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.1. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Paul Garlick
2019-02-17gnu: openmpi: Add InfiniBand support....* gnu/packages/mpi.scm (openmpi)[inputs]: Add opensm. [arguments]: Add openib configure flags; add build phase "find-opensm-headers". Ricardo Wurmus
2019-02-09gnu: openmpi: Upgrade to 4.0.0....* gnu/packages/linux.scm (psm)[arguments]: Add 'patch-sysmacros phase to fix "undefined reference to `minor'" errors while linking against libinfinipath.so. * gnu/packages/mpi.scm (openmpi): Upgrade to 4.0.0. [inputs]: Add libevent. [arguments]: Simplify configure-flags. Use system libevent. Adjust romio version strings. (%openmpi-setup): Use OMPI_MCA_rmaps_base_mapping_policy for oversubscription. Eric Bavier
2019-02-07gnu: openmpi: Add dependency on SLURM....This allows users to run Open MPI programs with 'srun'. * gnu/packages/mpi.scm (openmpi)[inputs]: Add SLURM. [arguments]: Add "--with-pmi" to #:configure-flags. Ludovic Courtès
2019-01-31gnu: hwloc: Update to 2.0.3....* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.3. Marius Bakke
2019-01-31gnu: hwloc@1: Update to 1.11.12....* gnu/packages/mpi.scm (hwloc): Update to 1.11.12. Marius Bakke
2018-11-14gnu: Add python-mpi4py....* gnu/packages/mpi.scm (python-mpi4py): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul Garlick
2018-10-04gnu: hwloc: Update to 2.0.2....* gnu/packages/mpi.scm (hwloc): Update to 2.0.2. Tobias Geerinckx-Rice
2018-09-11mpi: Factorize openmpi setup build phase....* gnu/packages/mpi.scm (%openmpi-setup): New variable. * gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi) (superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental) (sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases. Eric Bavier
2018-05-25gnu: openmpi: Add PSM2 (Intel OmniPath) support....* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM2 on supported systems. Ludovic Courtès
2018-05-25gnu: openmpi: Reintroduce PSM (Intel TrueScale) support....Fixes a regression introduced in 9129804230a3a4272731609f6418b876ba450575 whereby PSM would never be added as an input. * gnu/packages/mpi.scm (openmpi)[inputs]: Re-add PSM on supported systems. Ludovic Courtès
2018-05-25gnu: openmpi: Update to 3.0.1....* gnu/packages/mpi.scm (openmpi): Update to 3.0.1. [arguments]: In 'remove-absolute' phase, adjust romio file name. * gnu/packages/maths.scm (scalapack)[arguments]: Add 'set-test-environment' phase. (slepc-openmpi)[arguments]: Likewise. (mumps-openmpi)[arguments]: Likewise. (superlu-dist)[arguments]: In 'check' phase, set 'OMPI_MCA_plm_rsh_agent'. (scotch)[arguments]: In 'build-esmumps', likewise. (p4est)[arguments]: Add 'set-test-environment' phase. (hypre-openmpi)[arguments]: Likewise. Ludovic Courtès
2018-04-10gnu: hwloc: Skip 'linux-libnuma' test....That test would fail on some machines, for instance build machines behind berlin.guixsd.org. * gnu/packages/mpi.scm (hwloc)[arguments]: Add 'skip-linux-libnuma-test' phase. (hwloc-2.0)[arguments]: Replace it. Ludovic Courtès
2018-03-26gnu: hwloc@1: Update to 1.11.10....* gnu/packages/mpi.scm (hwloc): Update to 1.11.10. Ludovic Courtès
2018-03-26gnu: hwloc@2: Update to 2.0.1....* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.1. [source]: Remove 'patches'. * gnu/packages/patches/hwloc-tests-without-sysfs.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Ludovic Courtès
2018-03-26gnu: hwloc@1: Update to 1.11.9....* gnu/packages/mpi.scm (hwloc): Update to 1.11.9. Ludovic Courtès
2018-02-06gnu: hwloc: Add 2.0.0....* gnu/packages/mpi.scm (hwloc-2.0): New variable. * gnu/packages/patches/hwloc-tests-without-sysfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2017-11-07gnu: psm: Only use as an input on supported-systems....Syntax help supplied by bavier@member.fsf.org * gnu/packages/linux.scm (libfabric)[inputs]: Only use psm as an input on systems where psm is supported. * gnu/packages/mpi.scm (openmpi)[inputs]: Same. Efraim Flashner
2017-11-07gnu: openmpi: Add dependency on PSM....* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM. Dave Love
2017-10-03gnu: openmpi: Add "debug" output....This is necessary for one mechanism for attaching parallel debuggers and is also relevant for the runtime backtrace facility. * gnu/packages/mpi.scm (openmpi)[outputs]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dave Love
2017-09-12gnu: openmpi: Configure without builtin atomics....See https://www.mail-archive.com/users@lists.open-mpi.org//msg31400.html * gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure with --enable-builtin-atomics. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr> Dave Love
2017-09-12gnu: openmpi: Remove Valgrind from closure....* gnu/packages/mpi.scm (openmpi)[arguments]: Elide romio config info to avoid reference to valgrind. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dave Love
2017-09-08gnu: hwloc: Update to 1.11.8....* gnu/packages/mpi.scm (hwloc): Update to 1.11.8. Ludovic Courtès
2017-08-21gnu: openmpi: Configure without vampirtrace....VT is obsoleted by scorep (not currently packaged) and disabling it reduces the closure considerably. * mpi.scm (openmpi)[arguments]: Configure without vampirtrace. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dave Love
2017-08-21gnu: openmpi: Modify configuration to reduce closure....devel-headers are only for building MCA components, produce a large closure and aren't normally packaged. Only the affinity component of mpi-ext is useful. * gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure --with-devel-headers and --enable-mpi-ext=all. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dave Love
2017-08-21gnu: openmpi: Remove references to compiler pathnames in "_info" programs....This reduces the closure greatly, but note that the Fortran .mod files are gfortran version-specific, so there should probably be development packages for each incompatible version. (The runtime is supposed to be more-or-less version-independent unless the libgfortran soname changes.) There may still be a case for a separate runtime output. * gnu/packages/mpi.scm (openmpi)[arguments]: Add "remove-absolute" phase. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Dave Love
2017-08-21gnu: openmpi: Remove "static" output....--enable-static removes dynamically-loaded MCA components. * gnu/packages/mpi.scm (openmpi)[outputs]: Remove field. [arguments]: Don't configure with --enable-static; remove 'move-static-libraries' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dave Love
2017-08-21gnu: openmpi: Add separate variant with thread-multiple support....* gnu/packages/mpi.scm (openmpi)[arguments]: Remove "--enable-mpi-thread-multiple". (openmpi-thread-multiple): New variable. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr> Dave Love
2017-08-18gnu: openmpi: Add RDMA and libfabric support....* gnu/packages/mpi.scm (openmpi)[inputs]: Add rdma-core, libfabric. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Dave Love
2017-07-27gnu: openmpi: Add "static" output....* gnu/packages/mpi.scm (openmpi)[outputs]: New field. [arguments]: Add 'move-static-libraries' phase. Ludovic Courtès
2017-07-26gnu: openmpi: Enable SGE support....* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-sge" in #:configure-flags. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dave Love
2017-07-25gnu: openmpi: Description mentions MPI 3.0....* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dave Love
2017-07-25gnu: openmpi: Update to 1.10.7....* gnu/packages/mpi.scm (openmpi): Update to 1.10.7. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dave Love
2017-06-30gnu: hwloc: Add "lib" and "debug" outputs....* gnu/packages/mpi.scm (hwloc)[outputs]: New field. [arguments]: Add 'avoid-circular-references' phase. (openmpi)[inputs]: Use the "lib" output of HWLOC. * gnu/packages/parallel.scm (slurm)[inputs]: Likewise. Ludovic Courtès
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