| Age | Commit message (Expand) | Author |
|---|
| 2019-07-14 | gnu: Adjust uses of C{,PLUS}_INCLUDE_PATH for GCC 7....These variables are no longer set in the build environment by default. GCC
still respects these search paths and treats them as "system headers" so we
can continue to use them, just not expect them to be available.
* gnu/packages/mpi.scm (openmpi)[arguments]: Do not attempt to read from
C_INCLUDE_PATH, nor CPLUS_INCLUDE_PATH.
* gnu/packages/games.scm (kiki)[arguments]: Likewise.
* gnu/packages/networking.scm (hcxtools)[arguments]: Likewise.
* gnu/packages/synergy.scm (synergy)[arguments]: Likewise.
* gnu/packages/bioinformatics.scm (gemma, sailfish)[arguments]: Likewise.
* gnu/packages/maths.scm (dune-alugrid)[arguments]: Likewise.
| Marius Bakke |
| 2019-06-21 | gnu: python-mpi4py: Update to 3.0.2....* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.2.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Paul Garlick |
| 2019-04-16 | gnu: openmpi: Update to ....* gnu/packages/mpi.scm (openmpi): Update to .
mpi
openmpi
| Tobias Geerinckx-Rice |
| 2019-03-18 | gnu: Add java-openmpi....* gnu/packages/mpi.scm (java-openmpi): New variable.
| Ricardo Wurmus |
| 2019-02-20 | gnu: openmpi: Let configure enable PSM based on inputs....This fixes OpenMPI builds on systems not supported by the PSM packages.
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove '--enable-psm' and
'--enable-psm2' from #:configure-flags.
| Eric Bavier |
| 2019-02-18 | gnu: python-mpi4py: Update to 3.0.1....* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.1.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Paul Garlick |
| 2019-02-17 | gnu: openmpi: Add InfiniBand support....* gnu/packages/mpi.scm (openmpi)[inputs]: Add opensm.
[arguments]: Add openib configure flags; add build phase
"find-opensm-headers".
| Ricardo Wurmus |
| 2019-02-09 | gnu: openmpi: Upgrade to 4.0.0....* gnu/packages/linux.scm (psm)[arguments]: Add 'patch-sysmacros phase to fix
"undefined reference to `minor'" errors while linking against
libinfinipath.so.
* gnu/packages/mpi.scm (openmpi): Upgrade to 4.0.0.
[inputs]: Add libevent.
[arguments]: Simplify configure-flags. Use system libevent. Adjust romio
version strings.
(%openmpi-setup): Use OMPI_MCA_rmaps_base_mapping_policy for oversubscription.
| Eric Bavier |
| 2019-02-07 | gnu: openmpi: Add dependency on SLURM....This allows users to run Open MPI programs with 'srun'.
* gnu/packages/mpi.scm (openmpi)[inputs]: Add SLURM.
[arguments]: Add "--with-pmi" to #:configure-flags.
| Ludovic Courtès |
| 2019-01-31 | gnu: hwloc: Update to 2.0.3....* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.3.
| Marius Bakke |
| 2019-01-31 | gnu: hwloc@1: Update to 1.11.12....* gnu/packages/mpi.scm (hwloc): Update to 1.11.12.
| Marius Bakke |
| 2018-11-14 | gnu: Add python-mpi4py....* gnu/packages/mpi.scm (python-mpi4py): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul Garlick |
| 2018-10-04 | gnu: hwloc: Update to 2.0.2....* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
| Tobias Geerinckx-Rice |
| 2018-09-11 | mpi: Factorize openmpi setup build phase....* gnu/packages/mpi.scm (%openmpi-setup): New variable.
* gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi)
(superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental)
(sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
| Eric Bavier |
| 2018-05-25 | gnu: openmpi: Add PSM2 (Intel OmniPath) support....* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM2 on supported systems.
| Ludovic Courtès |
| 2018-05-25 | gnu: openmpi: Reintroduce PSM (Intel TrueScale) support....Fixes a regression introduced in
9129804230a3a4272731609f6418b876ba450575 whereby PSM would never be
added as an input.
* gnu/packages/mpi.scm (openmpi)[inputs]: Re-add PSM on supported
systems.
| Ludovic Courtès |
| 2018-05-25 | gnu: openmpi: Update to 3.0.1....* gnu/packages/mpi.scm (openmpi): Update to 3.0.1.
[arguments]: In 'remove-absolute' phase, adjust romio file name.
* gnu/packages/maths.scm (scalapack)[arguments]: Add
'set-test-environment' phase.
(slepc-openmpi)[arguments]: Likewise.
(mumps-openmpi)[arguments]: Likewise.
(superlu-dist)[arguments]: In 'check' phase, set
'OMPI_MCA_plm_rsh_agent'.
(scotch)[arguments]: In 'build-esmumps', likewise.
(p4est)[arguments]: Add 'set-test-environment' phase.
(hypre-openmpi)[arguments]: Likewise.
| Ludovic Courtès |
| 2018-04-10 | gnu: hwloc: Skip 'linux-libnuma' test....That test would fail on some machines, for instance build machines
behind berlin.guixsd.org.
* gnu/packages/mpi.scm (hwloc)[arguments]: Add 'skip-linux-libnuma-test'
phase.
(hwloc-2.0)[arguments]: Replace it.
| Ludovic Courtès |
| 2018-03-26 | gnu: hwloc@1: Update to 1.11.10....* gnu/packages/mpi.scm (hwloc): Update to 1.11.10.
| Ludovic Courtès |
| 2018-03-26 | gnu: hwloc@2: Update to 2.0.1....* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.1.
[source]: Remove 'patches'.
* gnu/packages/patches/hwloc-tests-without-sysfs.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
| Ludovic Courtès |
| 2018-03-26 | gnu: hwloc@1: Update to 1.11.9....* gnu/packages/mpi.scm (hwloc): Update to 1.11.9.
| Ludovic Courtès |
| 2018-02-06 | gnu: hwloc: Add 2.0.0....* gnu/packages/mpi.scm (hwloc-2.0): New variable.
* gnu/packages/patches/hwloc-tests-without-sysfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
| Ludovic Courtès |
| 2017-11-07 | gnu: psm: Only use as an input on supported-systems....Syntax help supplied by bavier@member.fsf.org
* gnu/packages/linux.scm (libfabric)[inputs]: Only use psm as an input
on systems where psm is supported.
* gnu/packages/mpi.scm (openmpi)[inputs]: Same.
| Efraim Flashner |
| 2017-11-07 | gnu: openmpi: Add dependency on PSM....* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM.
| Dave Love |
| 2017-10-03 | gnu: openmpi: Add "debug" output....This is necessary for one mechanism for attaching parallel debuggers
and is also relevant for the runtime backtrace facility.
* gnu/packages/mpi.scm (openmpi)[outputs]: New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Dave Love |
| 2017-09-12 | gnu: openmpi: Configure without builtin atomics....See https://www.mail-archive.com/users@lists.open-mpi.org//msg31400.html
* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure with
--enable-builtin-atomics.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
| Dave Love |
| 2017-09-12 | gnu: openmpi: Remove Valgrind from closure....* gnu/packages/mpi.scm (openmpi)[arguments]: Elide romio config info to
avoid reference to valgrind.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Dave Love |
| 2017-09-08 | gnu: hwloc: Update to 1.11.8....* gnu/packages/mpi.scm (hwloc): Update to 1.11.8.
| Ludovic Courtès |
| 2017-08-21 | gnu: openmpi: Configure without vampirtrace....VT is obsoleted by scorep (not currently packaged) and disabling it reduces
the closure considerably.
* mpi.scm (openmpi)[arguments]: Configure without vampirtrace.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Dave Love |
| 2017-08-21 | gnu: openmpi: Modify configuration to reduce closure....devel-headers are only for building MCA components, produce a large
closure and aren't normally packaged. Only the affinity component of
mpi-ext is useful.
* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure
--with-devel-headers and --enable-mpi-ext=all.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Dave Love |
| 2017-08-21 | gnu: openmpi: Remove references to compiler pathnames in "_info" programs....This reduces the closure greatly, but note that the Fortran .mod files are
gfortran version-specific, so there should probably be development packages
for each incompatible version. (The runtime is supposed to be more-or-less
version-independent unless the libgfortran soname changes.) There may still
be a case for a separate runtime output.
* gnu/packages/mpi.scm (openmpi)[arguments]: Add "remove-absolute" phase.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| Dave Love |
| 2017-08-21 | gnu: openmpi: Remove "static" output....--enable-static removes dynamically-loaded MCA components.
* gnu/packages/mpi.scm (openmpi)[outputs]: Remove field.
[arguments]: Don't configure with --enable-static; remove
'move-static-libraries' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Dave Love |
| 2017-08-21 | gnu: openmpi: Add separate variant with thread-multiple support....* gnu/packages/mpi.scm (openmpi)[arguments]: Remove
"--enable-mpi-thread-multiple".
(openmpi-thread-multiple): New variable.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
| Dave Love |
| 2017-08-18 | gnu: openmpi: Add RDMA and libfabric support....* gnu/packages/mpi.scm (openmpi)[inputs]: Add rdma-core, libfabric.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| Dave Love |
| 2017-07-27 | gnu: openmpi: Add "static" output....* gnu/packages/mpi.scm (openmpi)[outputs]: New field.
[arguments]: Add 'move-static-libraries' phase.
| Ludovic Courtès |
| 2017-07-26 | gnu: openmpi: Enable SGE support....* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-sge" in
#:configure-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Dave Love |
| 2017-07-25 | gnu: openmpi: Description mentions MPI 3.0....* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Dave Love |
| 2017-07-25 | gnu: openmpi: Update to 1.10.7....* gnu/packages/mpi.scm (openmpi): Update to 1.10.7.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Dave Love |
| 2017-06-30 | gnu: hwloc: Add "lib" and "debug" outputs....* gnu/packages/mpi.scm (hwloc)[outputs]: New field.
[arguments]: Add 'avoid-circular-references' phase.
(openmpi)[inputs]: Use the "lib" output of HWLOC.
* gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
| Ludovic Courtès |
| 2017-06-30 | gnu: hwloc: Use /var as the localstatedir....* gnu/packages/mpi.scm (hwloc)[arguments]: Add #:configure-flags.
| Ludovic Courtès |
| 2017-05-11 | gnu: hwloc: Update to 1.11.7....* gnu/packages/mpi.scm (hwloc): Update to 1.11.7.
| Ludovic Courtès |
| 2016-07-20 | gnu: openmpi: Make binaries reproducible....* gnu/packages/mpi.scm (openmpi)[arguments]: Remove timestamps from
source files. Delete installed configure logs.
| Eric Bavier |
| 2016-07-20 | gnu: openmpi: Update to 1.10.3....* gnu/packages/mpi.scm (openmpi): Update to 1.10.3.
[source]: Use https.
| Eric Bavier |
| 2016-04-14 | gnu: hwloc: Update to 1.11.2....* gnu/packages/mpi.scm (hwloc): Update to 1.11.2. Change URLs to https.
| Ludovic Courtès |
| 2016-02-03 | gnu: hwloc: Build without numactl support on armhf....* gnu/packages/mpi.scm (hwloc)[inputs]: Drop numactl on armhf, where the
package is not available.
| Andreas Enge |
| 2015-11-20 | gnu: openmpi: Update to 1.10.1....* gnu/packages/mpi.scm (openmpi): Update to 1.10.1.
[arguments]: Remove now-unsupported configure flags. Add
--enable-builtin-atomics. Remove development-oriented
--enable-debug.
| Eric Bavier |
| 2015-11-20 | gnu: hwloc: Update to 1.11.1....* gnu/packages/mpi.scm (hwloc): Update to 1.11.1.
[source]: Remove patch.
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it.
* gnu-system.am (dist_patch_DATA): Remove it.
| Eric Bavier |
| 2015-08-24 | gnu: hwloc: Propagate libpciaccess....* gnu/packages/mpi.scm (hwloc)[inputs]: Move LIBPCIACCESS to...
[propagated-inputs]: ... here. New field.
| Ludovic Courtès |
| 2015-06-29 | gnu: openmpi: Upgrade to 1.8.5....* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5.
[native-inputs]: Add perl.
[arguments]: Add configure flags for thread support.
| Eric Bavier |
| 2015-06-29 | gnu: hwloc: Move numactl to inputs....* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here...
[inputs]: ...to here.
[arguments]: New 'refine-libnuma' phase.
| Eric Bavier |
