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2019-02-20gnu: openmpi: Let configure enable PSM based on inputs.Eric Bavier
This fixes OpenMPI builds on systems not supported by the PSM packages. * gnu/packages/mpi.scm (openmpi)[arguments]: Remove '--enable-psm' and '--enable-psm2' from #:configure-flags.
2019-02-18gnu: python-mpi4py: Update to 3.0.1.Paul Garlick
* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.1. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-02-17gnu: openmpi: Add InfiniBand support.Ricardo Wurmus
* gnu/packages/mpi.scm (openmpi)[inputs]: Add opensm. [arguments]: Add openib configure flags; add build phase "find-opensm-headers".
2019-02-09gnu: openmpi: Upgrade to 4.0.0.Eric Bavier
* gnu/packages/linux.scm (psm)[arguments]: Add 'patch-sysmacros phase to fix "undefined reference to `minor'" errors while linking against libinfinipath.so. * gnu/packages/mpi.scm (openmpi): Upgrade to 4.0.0. [inputs]: Add libevent. [arguments]: Simplify configure-flags. Use system libevent. Adjust romio version strings. (%openmpi-setup): Use OMPI_MCA_rmaps_base_mapping_policy for oversubscription.
2019-02-07gnu: openmpi: Add dependency on SLURM.Ludovic Courtès
This allows users to run Open MPI programs with 'srun'. * gnu/packages/mpi.scm (openmpi)[inputs]: Add SLURM. [arguments]: Add "--with-pmi" to #:configure-flags.
2019-01-31gnu: hwloc: Update to 2.0.3.Marius Bakke
* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.3.
2019-01-31gnu: hwloc@1: Update to 1.11.12.Marius Bakke
* gnu/packages/mpi.scm (hwloc): Update to 1.11.12.
2018-11-14gnu: Add python-mpi4py.Paul Garlick
* gnu/packages/mpi.scm (python-mpi4py): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-04gnu: hwloc: Update to 2.0.2.Tobias Geerinckx-Rice
* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
2018-09-11mpi: Factorize openmpi setup build phase.Eric Bavier
* gnu/packages/mpi.scm (%openmpi-setup): New variable. * gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi) (superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental) (sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
2018-05-25gnu: openmpi: Add PSM2 (Intel OmniPath) support.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM2 on supported systems.
2018-05-25gnu: openmpi: Reintroduce PSM (Intel TrueScale) support.Ludovic Courtès
Fixes a regression introduced in 9129804230a3a4272731609f6418b876ba450575 whereby PSM would never be added as an input. * gnu/packages/mpi.scm (openmpi)[inputs]: Re-add PSM on supported systems.
2018-05-25gnu: openmpi: Update to 3.0.1.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi): Update to 3.0.1. [arguments]: In 'remove-absolute' phase, adjust romio file name. * gnu/packages/maths.scm (scalapack)[arguments]: Add 'set-test-environment' phase. (slepc-openmpi)[arguments]: Likewise. (mumps-openmpi)[arguments]: Likewise. (superlu-dist)[arguments]: In 'check' phase, set 'OMPI_MCA_plm_rsh_agent'. (scotch)[arguments]: In 'build-esmumps', likewise. (p4est)[arguments]: Add 'set-test-environment' phase. (hypre-openmpi)[arguments]: Likewise.
2018-04-10gnu: hwloc: Skip 'linux-libnuma' test.Ludovic Courtès
That test would fail on some machines, for instance build machines behind berlin.guixsd.org. * gnu/packages/mpi.scm (hwloc)[arguments]: Add 'skip-linux-libnuma-test' phase. (hwloc-2.0)[arguments]: Replace it.
2018-03-26gnu: hwloc@1: Update to 1.11.10.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc): Update to 1.11.10.
2018-03-26gnu: hwloc@2: Update to 2.0.1.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.1. [source]: Remove 'patches'. * gnu/packages/patches/hwloc-tests-without-sysfs.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-03-26gnu: hwloc@1: Update to 1.11.9.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc): Update to 1.11.9.
2018-02-06gnu: hwloc: Add 2.0.0.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-2.0): New variable. * gnu/packages/patches/hwloc-tests-without-sysfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2017-11-07gnu: psm: Only use as an input on supported-systems.Efraim Flashner
Syntax help supplied by bavier@member.fsf.org * gnu/packages/linux.scm (libfabric)[inputs]: Only use psm as an input on systems where psm is supported. * gnu/packages/mpi.scm (openmpi)[inputs]: Same.
2017-11-07gnu: openmpi: Add dependency on PSM.Dave Love
* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM.
2017-10-03gnu: openmpi: Add "debug" output.Dave Love
This is necessary for one mechanism for attaching parallel debuggers and is also relevant for the runtime backtrace facility. * gnu/packages/mpi.scm (openmpi)[outputs]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-12gnu: openmpi: Configure without builtin atomics.Dave Love
See https://www.mail-archive.com/users@lists.open-mpi.org//msg31400.html * gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure with --enable-builtin-atomics. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-09-12gnu: openmpi: Remove Valgrind from closure.Dave Love
* gnu/packages/mpi.scm (openmpi)[arguments]: Elide romio config info to avoid reference to valgrind. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-08gnu: hwloc: Update to 1.11.8.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc): Update to 1.11.8.
2017-08-21gnu: openmpi: Configure without vampirtrace.Dave Love
VT is obsoleted by scorep (not currently packaged) and disabling it reduces the closure considerably. * mpi.scm (openmpi)[arguments]: Configure without vampirtrace. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21gnu: openmpi: Modify configuration to reduce closure.Dave Love
devel-headers are only for building MCA components, produce a large closure and aren't normally packaged. Only the affinity component of mpi-ext is useful. * gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure --with-devel-headers and --enable-mpi-ext=all. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21gnu: openmpi: Remove references to compiler pathnames in "_info" programs.Dave Love
This reduces the closure greatly, but note that the Fortran .mod files are gfortran version-specific, so there should probably be development packages for each incompatible version. (The runtime is supposed to be more-or-less version-independent unless the libgfortran soname changes.) There may still be a case for a separate runtime output. * gnu/packages/mpi.scm (openmpi)[arguments]: Add "remove-absolute" phase. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21gnu: openmpi: Remove "static" output.Dave Love
--enable-static removes dynamically-loaded MCA components. * gnu/packages/mpi.scm (openmpi)[outputs]: Remove field. [arguments]: Don't configure with --enable-static; remove 'move-static-libraries' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21gnu: openmpi: Add separate variant with thread-multiple support.Dave Love
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove "--enable-mpi-thread-multiple". (openmpi-thread-multiple): New variable. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-08-18gnu: openmpi: Add RDMA and libfabric support.Dave Love
* gnu/packages/mpi.scm (openmpi)[inputs]: Add rdma-core, libfabric. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-27gnu: openmpi: Add "static" output.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[outputs]: New field. [arguments]: Add 'move-static-libraries' phase.
2017-07-26gnu: openmpi: Enable SGE support.Dave Love
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-sge" in #:configure-flags. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25gnu: openmpi: Description mentions MPI 3.0.Dave Love
* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25gnu: openmpi: Update to 1.10.7.Dave Love
* gnu/packages/mpi.scm (openmpi): Update to 1.10.7. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-06-30gnu: hwloc: Add "lib" and "debug" outputs.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc)[outputs]: New field. [arguments]: Add 'avoid-circular-references' phase. (openmpi)[inputs]: Use the "lib" output of HWLOC. * gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
2017-06-30gnu: hwloc: Use /var as the localstatedir.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc)[arguments]: Add #:configure-flags.
2017-05-11gnu: hwloc: Update to 1.11.7.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc): Update to 1.11.7.
2016-07-20gnu: openmpi: Make binaries reproducible.Eric Bavier
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove timestamps from source files. Delete installed configure logs.
2016-07-20gnu: openmpi: Update to 1.10.3.Eric Bavier
* gnu/packages/mpi.scm (openmpi): Update to 1.10.3. [source]: Use https.
2016-04-14gnu: hwloc: Update to 1.11.2.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc): Update to 1.11.2. Change URLs to https.
2016-02-03gnu: hwloc: Build without numactl support on armhf.Andreas Enge
* gnu/packages/mpi.scm (hwloc)[inputs]: Drop numactl on armhf, where the package is not available.
2015-11-20gnu: openmpi: Update to 1.10.1.Eric Bavier
* gnu/packages/mpi.scm (openmpi): Update to 1.10.1. [arguments]: Remove now-unsupported configure flags. Add --enable-builtin-atomics. Remove development-oriented --enable-debug.
2015-11-20gnu: hwloc: Update to 1.11.1.Eric Bavier
* gnu/packages/mpi.scm (hwloc): Update to 1.11.1. [source]: Remove patch. * gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it. * gnu-system.am (dist_patch_DATA): Remove it.
2015-08-24gnu: hwloc: Propagate libpciaccess.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc)[inputs]: Move LIBPCIACCESS to... [propagated-inputs]: ... here. New field.
2015-06-29gnu: openmpi: Upgrade to 1.8.5.Eric Bavier
* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5. [native-inputs]: Add perl. [arguments]: Add configure flags for thread support.
2015-06-29gnu: hwloc: Move numactl to inputs.Eric Bavier
* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here... [inputs]: ...to here. [arguments]: New 'refine-libnuma' phase.
2015-06-29gnu: hwloc: Upgrade to 1.10.1.Eric Bavier
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch. * gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1. [source]: Use patch. [propagated-inputs]: Remove libpci. [inputs]: Add libpciaccess. * gnu-system.am (dist_patch_DATA): Add patch.
2015-06-25gnu: Replace versioned gfortran inputs with just "gfortran".Ricardo Wurmus
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with "gfortran". * gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise. * gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu) (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise. (octave)[native-inputs]: Likewise. (gmsh)[propagated-inputs]: Likewise. * gnu/packages/mpi.scm (openmpi)[inputs]: Likewise. * gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise. * gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise. * gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with "gfortran".
2014-10-20gnu: Add 'version-prefix' and 'version-major+minor'; use them.Ian Denhardt
The procedure version-prefix truncates a version string to a certain number of components. version-major+minor is a special case of this, which extracts the "major.minor" part of the string. Previously this was handled by an expression common to several packages. * guix/utils.scm (version-prefix, version-major+minor): New procedures * gnu/packages/backup.scm (duplicity): Use version-major+minor. * gnu/packages/cmake.scm (cmake): Likewise. * gnu/packages/gnome.scm (libbonobo, libbonoboui): Likewise. * gnu/packages/gnutls.scm (gnutls): Likewise. * gnu/packages/mail.scm (gmime): Likewise. * gnu/packages/mpd.scm (mpd): Likewise. * gnu/packages/mpi.scm (openmpi): Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-05-18gnu: openmpi: Add memchecker support.Eric Bavier
* gnu/packages/mpi.scm (openmpi) [inputs]: Add valgrind. Unpropagate gfortran. [arguments]: Add configure flags for memchecker.
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