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2018-09-09Merge branch 'master' into core-updatesMarius Bakke
2018-09-09gnu: ghostscript: Update replacement to 9.24 [security fixes].•••The following CVEs are fixed with this release: CVE-2018-15908, CVE-2018-15909, CVE-2018-15910, CVE-2018-15911, CVE-2018-16509, CVE-2018-16510, CVE-2018-16511, CVE-2018-16513, CVE-2018-16539, CVE-2018-16540, CVE-2018-16541, CVE-2018-16542, CVE-2018-16543. * gnu/packages/patches/ghostscript-CVE-2018-10194.patch: Delete file. * gnu/packages/patches/ghostscript-CVE-2018-16509.patch, gnu/packages/patches/ghostscript-bug-699708.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ghostscript.scm (ghostscript/fixed): Update to 9.24. [source](patches): Remove 'ghostscript-CVE-2018-10194.patch' and 'ghostscript-runpath.patch'. Add 'ghostscript-CVE-2018-16509.patch' and 'ghostscript-bug-699708.patch'. [arguments]: Add LDFLAGS to #:configure-flags, and a phase to create output directory. Marius Bakke
2018-09-08gnu: mes: Update to 0.17.1.•••* gnu/packages/patches/mes-nyacc-0.86.0.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mes.scm (mes): Update to 0.17.1, depend on latest Nyacc 0.86.0. (nyacc-for-mes): Remove. Jan Nieuwenhuizen
2018-09-08gnu: nyacc: Update to 0.86.0.•••* gnu/packages/patches/nyacc-binary-literals.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mes.scm (nyacc): Update to 0.86.0, add patch. Jan Nieuwenhuizen
2018-09-03Merge branch 'master' into core-updatesMarius Bakke
2018-09-03gnu: openexr: Update to 2.3.0.•••* gnu/packages/graphics.scm (openexr): Update to 2.3.0. [source](uri): Change to new download location. [source](snippet): Remove workaround. [source](patches): Remove. * gnu/packages/patches/openexr-missing-samples.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Marius Bakke
2018-09-02gnu: haskell-mode: Fix test failure.•••Fixes <https://bugs.gnu.org/31726>. Thanks to Jack Hill <jackhill@jackhill.us> for exploring different solutions at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=31726>. * gnu/packages/patches/haskell-mode-unused-variables.patch, gnu/packages/patches/haskell-mode-make-check.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/emacs.scm (haskell-mode)[source]: Use them. [arguments]: Adjust 'pre-build' phase to embed file name. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Alex Vong
2018-09-02gnu: rust: Bootstrap (only) Rust 1.19.0 by mrustc.•••* gnu/packages/patches/rust-1.19-mrustc.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/rust.scm (rust-1.19)[source]: Add patch "rust-1.19-mrustc.patch". [arguments]<#:modules>: New field. <#:phases>[patch-cargo-tomls]: New phase. <#:phases>[build]: Modify. <#:phases>[install]: Modify. [native-inputs]: Replace rust-bootstrap by mrustc. (rust-1.23)[native-inputs]: New field. [arguments]<#:phases>: Delete phase "patch-cargo-tomls". Danny Milosavljevic
2018-09-01gnu: qtbase: Fix build with glibc >= 2.28.•••* gnu/packages/patches/qtbase-glibc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/qt.scm (qtbase)[source](patches): Use it. [arguments]: Remove "--no-feature-renameat2" from #:configure-flags. Marius Bakke
2018-09-01gnu: gcc@4.9: Fix FTBFS with Glibc >= 2.28.•••* gnu/packages/commencement.scm (gcc-for-libstdc++): New variable. (libstdc++-boot0): Inherit from GCC-FOR-LIBSTDC++ instead of GCC-4.9. * gnu/packages/gcc.scm (gcc-4.9)[source](patches): Add "gcc-4.9-libsanitizer-ustat.patch". * gnu/packages/patches/gcc-4.9-libsanitizer-ustat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Marius Bakke
2018-09-01gnu: texinfo@5: Fix FTBFS with Perl >= 5.28.•••* gnu/packages/patches/texinfo-5-perl-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/texinfo.scm (texinfo-5)[source](patches): New field. Marius Bakke
2018-08-30netsurf: Upgrade to 3.8.•••* gnu/packages/patches/netsurf-message-timestamp.patch: New patch. * gnu/packages/patches/netsurf-system-utf8proc.patch: Adjust to new source. * gnu/packages/web.scm (netsurf): Upgrade to 3.8. [source]: Add the new patch. Eric Bavier
2018-08-30gnu: snappy: Optimise.•••* gnu/packages/compression.scm (snappy)[source]: Build with ‘-O2’. * gnu/package/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2018-08-29Revert "gnu: snappy: Optimise."•••This causes too many rebuilds for the master branch. This reverts commit f96ed06805db934ff735e80596f1373dc1c2b5a8. Marius Bakke
2018-08-28gnu: snappy: Optimise.•••* gnu/packages/compression.scm (snappy)[source]: Build with ‘-O2’. * gnu/package/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2018-08-28gnu: dropbear: Fix CVE-2018-15599.•••* gnu/packages/patches/dropbear-CVE-2018-15599.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (dropbear)[source]: Use it. Leo Famulari
2018-08-28gnu: GRUB: Adjust to recent binutils changes.•••* gnu/packages/patches/grub-binutils-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/bootloaders.scm (grub)[source](patches): Add it. Marius Bakke
2018-08-28Merge branch 'master' into core-updatesMarius Bakke
2018-08-28gnu: GRUB: Check for errors from efibootmgr.•••* gnu/packages/patches/grub-check-error-efibootmgr.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/bootloaders.scm (grub)[source](patches): New field. Marius Bakke
2018-08-27gnu: python-pygit2: Update to 0.26.4.•••* gnu/packages/python.scm (python-pygit2, python2-pygit2): Update to 0.26.4. [source]: Remove 'python-pygit2-disable-network-tests.patch'. * gnu/packages/patches/python-pygit2-disable-network-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2018-08-27gnu: cairo: Fix undefined behaviour.•••This fixes <https://bugs.freedesktop.org/show_bug.cgi?id=104325> which showed up in Guix as an infinite loop during cairocffi tests. * gnu/packages/patches/cairo-setjmp-wrapper.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gtk.scm (cairo)[source](patches): Add it. Marius Bakke
2018-08-27gnu: python-pillow: Update to 5.2.0.•••* gnu/packages/patches/python-pillow-fix-failing-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/python.scm (python-pillow): Update to 5.2.0. [source](patches, patch-flags): Remove. [native-inputs]: Replace PYTHON-NOSE with PYTHON-PYTEST. [arguments]: Adjust custom check phase accordingly. Marius Bakke
2018-08-26gnu: parted: Fix build with glibc >= 2.28.•••* gnu/packages/patches/parted-glibc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/disk.scm (parted)[source](patches): New field. Marius Bakke
2018-08-25gnu: Add avogadro.•••* gnu/packages/chemistry.scm (avogadro): New variable. * gnu/packages/patches/avogadro-boost148.patch, gnu/packages/patches/avogadro-eigen3-update.patch, gnu/packages/patches/avogadro-python-eigen-lib.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Kei Kebreau
2018-08-25gnu: gdb: Remove obsolete patch.•••* gnu/packages/patches/gdb-python-3.7.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/gdb.scm (gdb)[source](patches): Remove field. Marius Bakke
2018-08-25Merge branch 'staging' into core-updatesMarius Bakke
2018-08-25gnu: findutils: Fix build with glibc 2.28.•••* gnu/packages/patches/findutils-gnulib-libio.patch, gnu/packages/patches/findutils-makedev.patch: New files. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/base.scm (findutils)[source](patches): Use them. Marius Bakke
2018-08-25gnu: m4: Fix FTBFS with glibc >= 2.28.•••* gnu/packages/patches/m4-gnulib-libio.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/m4.scm (m4)[source](patches): New field. Marius Bakke
2018-08-25gnu: gcc: Fix build with glibc >= 2.28.•••* gnu/packages/patches/gcc-libsanitizer-ustat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gcc.scm (gcc-5)[source](patches): Add it. Marius Bakke
2018-08-25gnu: glibc: Update to 2.28.•••* gnu/packages/patches/glibc-2.28-git-fixes.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/base.scm (glibc/linux): Update to 2.28. [source](patches): Add 'glibc-2.28-git-fixes.patch'. Remove 2.27 equivalent. (glibc-2.28): Remove variable. (glibc-2.27): New public variable Marius Bakke
2018-08-24gnu: OpenSSH: Update to 7.8p1.•••* gnu/packages/ssh.scm (openssh): Update to 7.8p1. [source]: Remove 'openssh-CVE-2018-15473.patch'. * gnu/packages/patches/openssh-CVE-2018-15473.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2018-08-23gnu: byobu: Update to 5.127.•••* gnu/packages/screen.scm (byobu): Update to 5.127. * gnu/packages/patches/byobu-writable-status.patch: Adjust context accordingly. Tobias Geerinckx-Rice
2018-08-22gnu: perl-dbd-mysql: Update to 4.046.•••* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046. [source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'. * gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2018-08-22gnu: soundtouch: Fix CVE-2018-{1000223,14044,14045}.•••* gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch, gnu/packages/patches/soundtouch-CVE-2018-1000223.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/audio.scm (soundtouch)[source]: Use them. Leo Famulari
2018-08-22gnu: Remove GCC ICE workarounds.•••* gnu/packages/patches/doxygen-gcc-ice.patch, gnu/packages/patches/mariadb-gcc-ice.patch, gnu/packages/patches/perf-gcc-ice.patch: Delete files * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/databases.scm (mariadb)[source](patches): Likewise. * gnu/packages/linux.scm (perf)[source](patches): Likewise. * gnu/packages/documentation.scm (doxygen)[inputs, arguments]: Likewise. Marius Bakke
2018-08-21gnu: openssh: Don't allow remote username enumeration [fixes CVE-2018-15473].•••* gnu/packages/patches/openssh-CVE-2018-15473.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (openssh)[source]: Use it. Leo Famulari
2018-08-19gnu: gcc@4.8: Fix libsanitizer build issue.•••Fixes <https://bugs.gnu.org/32397>. Reported by fis trivial <ybbs.daans@hotmail.com>. * gnu/packages/patches/gcc-4.8-libsanitizer-fix.patch: New file. * gnu/packages/gcc.scm (gcc-4.8)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2018-08-19Merge branch 'staging'Marius Bakke
2018-08-18gnu: eigen: Update to 3.3.5.•••* gnu/packages/algebra.scm (eigen): Update to 3.3.5. [source]: Remove upstreamed ARM patch and obsolete substitutions. * gnu/packages/patches/eigen-arm-neon-fixes.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-08-17gnu: octave: Update to 4.4.1.•••* gnu/packages/maths.scm (octave): Update to 4.4.1. (qtoctave)[source]: Remove obsolete patch. * gnu/packages/patches/qtoctave-qt-5.11-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Kei Kebreau
2018-08-17gnu: lxc: Update to 3.0.2.•••* gnu/packages/virtualization.scm (lxc): Update to 3.0.2. [source]: Remove patch. * gnu/packages/patches/lxc-CVE-2018-6556.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-08-16gnu: racket: Update to 7.0.•••* gnu/packages/scheme.scm (racket): Update to 7.0. [inputs]: Add libedit. [arguments]: Update the list of FFI library references to patch. [source]: Remove 'racket-fix-xform-issue.patch'. * gnu/packages/patches/racket-store-checksum-override.patch: Adjust. * gnu/packages/patches/racket-fix-xform-issue.patch: Delete file. * gnu/local.mk: Adjust accordingly. Signed-off-by: Leo Famulari <leo@famulari.name> Konrad Hinsen
2018-08-16gnu: libgcrypt: Make build reproducible.•••* gnu/packages/patches/libgcrypt-make-yat2m-reproducible.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnupg.scm (libgcrypt)[source]: Use it. Signed-off-by: Leo Famulari <leo@famulari.name> Björn Höfling
2018-08-16gnu: btrfs-progs: Update to 4.17.1.•••* gnu/packages/linux.scm (btrfs-progs): Update to 4.17.1. [source]: Remove patch. [native-inputs]: Add python. * gnu/packages/patches/btrfs-progs-e-value-block.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-08-16gnu: e2fsprogs: Update to 1.44.3.•••* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.3. [source]: Remove glibc-2.27 patch. (extundelete)[source]: Apply e2fsprogs-1.44 patch. * gnu/packages/patches/e2fsprogs-glibc-2.27.patch: Delete file... * gnu/local.mk (dist_patch_DATA): ...remove it, and add... * gnu/packages/patches/extundelete-e2fsprogs-1.44.patch: ...this new file. Tobias Geerinckx-Rice
2018-08-16Merge branch 'master' into stagingMarius Bakke
2018-08-16gnu: qemu: Update to 3.0.0 [mitigate CVE-2018-3639].•••* gnu/packages/virtualization.scm (qemu): Update to 3.0.0. [source]: Remove patch. * gnu/packages/patches/qemu-CVE-2018-11806.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-08-15gnu: clementine: Fix creating initial database.•••It seems a recent version of sqlite broke Clementine's first startup. It turns out we can patch clementine to fix the problem instead of providing a different sqlite package: <https://github.com/clementine-player/Clementine/pull/5669> * gnu/packages/databases.scm (sqlite-with-fts3): Remove. * gnu/packages/music.scm (clementine)[inputs]: Replace sqlite-with-fts3 with sqlite. [source]: Add clementine-fix-sqlite.patch. * gnu/packages/patches/clementine-fix-sqlite.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Pierre Langlois
2018-08-15gnu: openssl@1.1: Update to 1.1.0i [fix CVE-2018-0737].•••Also includes a fix for CVE-2018-0732, and a different approach to fixing CVE-2018-0495. * gnu/packages/tls.scm (openssl-next): Update to 1.1.0i. [sources]: Remove CVE patches. * gnu/packages/patches/openssl-1.1.0-CVE-2018-0495.patch: Delete... * gnu/packages/patches/openssl-1.1.0-CVE-2018-0732.patch: ...both files. * gnu/local.mk (dist_patch_DATA): Remove them. Tobias Geerinckx-Rice
2018-08-14gnu: gdm: Fix CVE-2018-14424.•••* gnu/packages/patches/gdm-CVE-2018-14424.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gdm): Use it. Leo Famulari
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