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2022-08-12gnu: lrcalc: Update to 2.1....* gnu/packages/algebra.scm (lrcalc): Update to 2.1. [source]: Remove patch. * gnu/packages/patches/lrcalc-includes.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Unregister file. Signed-off-by: Andreas Enge <andreas@enge.fr> vicvbcun
2022-08-12gnu: lcalc: Update to 2.0.5....* gnu/packages/sagemath.scm (lcalc): Update to 2.0.5. * gnu/packages/patches/lcalc-default-parameters-1.patch, gnu/packages/patches/lcalc-default-parameters-2.patch, gnu/packages/patches/lcalc-lcommon-h.patch, gnu/packages/patches/lcalc-using-namespace-std.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Unregister files. Signed-off-by: Andreas Enge <andreas@enge.fr> vicvbcun
2022-08-11gnu: libvirt, python-libvirt: Update to 8.6.0....* gnu/packages/patches/libvirt-add-install-prefix.patch: Refresh patch. * gnu/packages/virtualization.scm (libvirt): Update to 8.6.0. (python-libvirt): Update to 8.6.0. [arguments]: Remove, as the default test phase works fine. Marius Bakke
2022-08-11gnu: qtwayland: Fix build with GCC 11....* gnu/packages/patches/qtwayland-gcc-11.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/qt.scm (qtwayland)[source](patches): New field. Marius Bakke
2022-08-11gnu: fuse@2: Prepare for newer glibc....* gnu/packages/patches/fuse-glibc-2.34.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/linux.scm (fuse)[source](patches): Add the patch. [arguments]: Add force-bootstrap phase. [native-inputs]: Add AUTOCONF, AUTOMAKE, GETTEXT-MINIMAL, and LIBTOOL. Marius Bakke
2022-08-09gnu: gnupg: Patch CVE-2022-34903....* gnu/packages/gnupg.scm (gnupg)[replacement]: New field. (gnupg/replacement): New variable. * gnu/packages/patches/gnupg-CVE-2022-34903.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-08-09gnu: aspell: Patch CVE-2019-25051....* gnu/packages/aspell.scm (aspell)[source]: Add patch. * gnu/packages/patches/aspell-CVE-2019-25051.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-08-08gnu: unzip: Patch for CVE-2022-0529 and CVE-2022-0530....* gnu/packages/compression.scm (unzip)[replacement]: New field. (unzip/fixed): New variable. * gnu/packages/patches/unzip-CVE-2022-0529+CVE-2022-0530.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-08-07gnu: libtirpc: Fix CVE-2021-46828....* gnu/packages/onc-rpc.scm (libtirpc)[replacement]: New field. (libtirpc/fixed): New variable. (libtirpc-hurd)[source]: Add patch. * gnu/packages/patches/libtirpc-CVE-2021-46828.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-08-07gnu: shishi: Update to 1.0.3....* gnu/packages/kerberos.scm (shishi): Update to 1.0.3. [source]: Remove patch. [arguments]: Remove configure flag overriding libgcrypt detection. * gnu/packages/patches/shishi-fix-libgcrypt-detection.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2022-08-05gnu: mumps: Update to 5.5.1...* gnu/packages/maths.scm (mumps): Update to 5.5.1. Stop applying patches as the build configuration has been updated upstream. Allow for further optimized BLR compression by specifying the -DBLR_MT build option. * gnu/packages/patches/mumps-build-parallelism.patch: File removed. * gnu/packages/patches/mumps-shared-libseq.patch: File removed. * gnu/packages/patches/mumps-shared-mumps.patch: File removed. * gnu/packages/patches/mumps-shared-pord.patch: File removed. Signed-off-by: Ludovic Courtès <ludo@gnu.org> FELŠÖCI Marek
2022-08-04gnu: ruby-anystyle: Initialize dictionary files....For the GDBM and Marshal dictionary adapters to be useful with their default settings, we must initialize their data files during the package build: upstream would initialize them lazily, but that doesn't work with an immutable installation directory (at least, not without more complex patches). Otherwise, we would always end up rebuilding the dictionary at startup, which is “slow” and “not recommended”. * gnu/packages/patches/ruby-anystyle-fix-dictionary-populate.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ruby.scm (ruby-anystyle)[patches]: Use it. [arguments]<#:phases>: Add 'populate-dictionaries' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2022-08-04gnu: ruby-anystyle-data: Don't write to installed gem....* gnu/packages/patches/ruby-anystyle-data-immutable-install.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ruby.scm (ruby-anystyle-data)[patches]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2022-08-04gnu: Add ruby-latex-decode....* gnu/packages/patches/ruby-latex-decode-fix-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ruby.scm (ruby-latex-decode): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2022-08-04gnu: Add aoflagger....* gnu/packages/astronomy.scm (aoflagger): New variable. * gnu/packages/patches/aoflagger-use-system-provided-pybind11.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sharlatan Hellseher
2022-08-04gnu: Add barony....* gnu/packages/games.scm (barony): New variable. * gnu/packages/patches/barony-fix-textures.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2022-08-03gnu: nsis: Update to 3.08....* gnu/packages/patches/nsis-source-date-epoch.patch: Drop this patch. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/patches/nsis-env-passthru.patch: Adjust the patch. * gnu/packages/installers.scm (make-nsis): Update to 3.08. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Vivien Kraus
2022-08-01gnu: Add fail2ban....* gnu/packages/admin.scm (fail2ban): New variable. * gnu/packages/patches/fail2ban-0.11.2_CVE-2021-32749.patch, gnu/packages/patches/fail2ban-0.11.2_fix-setuptools-drop-2to3.patch, gnu/packages/patches/fail2ban-0.11.2_fix-test-suite.patch, gnu/packages/patches/fail2ban-paths-guix-conf.patch, gnu/packages/patches/fail2ban-python310-server-action.patch, gnu/packages/patches/fail2ban-python310-server-actions.patch, gnu/packages/patches/fail2ban-python310-server-jails.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Co-authored-by: Ludovic Courtès <ludo@gnu.org> muradm
2022-07-31gnu: jami: Apply upstream patch that fixes a usability issue....* gnu/packages/patches/jami-fix-esc-bug.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/jami.scm (%jami-sources): Apply it. Maxim Cournoyer
2022-07-31gnu: libjami: Update to 20220726.1515.da8d1da....* gnu/packages/patches/jami-fix-crash-on-quit.patch: Delete file. * gnu/packages/patches/jami-images-loading.patch: Likewise. * gnu/packages/patches/jami-libclient-audio-managers.patch: Likewise. * gnu/packages/patches/jami-memory-usage.patch: Likewise. * gnu/local.mk (dist_patch_DATA): De-register removed patches. * gnu/packages/jami.scm (%jami-version): Update to 20220726.1515.da8d1da. (libjami)[configure-flags]: Add '--disable-static'. (jami-apply-custom-patches): Adjust for top directory renaming. (%ffmpeg-default-configure-flags): Add muxer support for g726 and g726le. Add demuxer support for g723_1, g726 and g726le. Add encoder/decoder support for g726, g726le and g723_1. Add decoder support for g729. (ffmpeg-jami)[patches]: Add 'libopusenc-reload-packet-loss-at-encode'. (jami-libclient)[native-inputs]: New field. [inputs]: Add ffmpeg-jami and libxkbcommon. [propagated-inputs]: Replace qtbase-5 with qtbase. Maxim Cournoyer
2022-07-31gnu: qttools: Rename to qttools-5....Automated with: git grep -l qttools | xargs sed 's/\bqttools\b/\0-5/g' -i git checkout NEWS Maxim Cournoyer
2022-07-27gnu: libphonenumber: Build reproducibly....* gnu/packages/messaging.scm (libphonenumber): Add patch. * gnu/packages/patches/libphonenumber-reproducible-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. Signed-off-by: Jonathan Brielmaier <jonathan.brielmaier@web.de> Antero Mejr
2022-07-24gnu: dbxfs: Update to 1.0.63....* gnu/packages/file-systems.scm (dbxfs): Update to 1.0.63. * gnu/packages/patches/dbxfs-remove-sentry-sdk.patch: Update patch. Efraim Flashner
2022-07-23gnu: PHP: Fix test failure with newer cURL....* gnu/packages/patches/php-curl-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/php.scm (php)[source](patches): Add it. Marius Bakke
2022-07-23gnu: PHP: Update to 7.4.30....* gnu/packages/php.scm (php): Update to 7.4.30. [source](patches): Remove obsolete patch. * gnu/packages/patches/php-openssl_x509_checkpurpose_basic.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2022-07-23gnu: eigen: Update to 3.4.0....* gnu/packages/algebra.scm (eigen): Update to 3.4.0. * gnu/packages/patches/eigen-fix-strict-aliasing-bug.patch: New file. * gnu/packages/patches/eigen-remove-openmp-error-counting.patch, gnu/packages/patches/eigen-stabilise-sparseqr-test.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Update accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org> vicvbcun
2022-07-18gnu: libgeotiff: Update to 1.7.1....* gnu/packages/geo.scm (libgeotiff): Update to 1.7.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2022-07-13services: docker: Fix race condition....Fixes <https://issues.guix.gnu.org/38432>. * gnu/packages/patches/containerd-create-pid-file.patch: New file. * gnu/local.mk (dist_patch_DATA): Add this. * gnu/packages/docker.scm (containerd)[source]: Add this patch. * gnu/services/docker.scm (containerd-shepherd-service): Add #:pid-file and #:pid-file-timeout. * gnu/services/docker.scm (docker-shepherd-service): Add --containerd flag. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Oleg Pykhalov
2022-07-13gnu: emacs-hyperbole: Update to 8.0.0....* gnu/packages/emacs-xyz.scm (emacs-hyperbole): Update to 8.0.0. [arguments]<#:include>: Use %default-include. <#:phases>: Add build fix. * gnu/packages/patches/emacs-hyperbole-toggle-messaging.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Delete reference to removed file. Nicolas Goaziou
2022-07-12gnu: pokerth: Fix build and modernize package....Fixes <https://issues.guix.gnu.org/51093>. * gnu/packages/games.scm (pokerth) [source]: Apply patch [inputs]: Use new style. [phases]: Delete trailing #t. Use gexps. {fix-paths}: Remove the gsasl and libircclient related substitutions. Maxim Cournoyer
2022-07-12gnu: llvm-3.7, llvm-3.8: Fix build with gcc....* gnu/packages/patches/clang-runtime-3.7-fix-build-with-python3.patch, gnu/packages/patches/llvm-3.x.1-fix-build-with-gcc.patch: New files. * gnu/packages/llvm.scm (clang-runtime-3.7, llvm-3.7, llvm-3.8): Use patches. * gnu/local.mk: Register patches. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-07-12gnu: llvm-8: Fix build with gcc-10....* gnu/packages/patches/llvm-8-fix-build-with-gcc-10.patch: New file. * gnu/packages/llvm.scm (clang-8, clang-runtime-8): Update to 8.0.1. * gnu/packages/llvm.scm (llvm-8): Use patch and update to 8.0.1. * gnu/local.mk: Register patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-07-11gnu: xf86-video-mach64: Update to 6.9.7....* gnu/packages/xorg.scm (xf86-video-mach64): Update to 6.9.7. [source]: Remove patches. * gnu/packages/patches/xf86-video-mach64-bool-to-boolean.patch, gnu/packages/patches/xf86-video-mach64-glibc-2.20.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them. Efraim Flashner
2022-07-07gnu: mia: Build against VTK 9....* gnu/packages/image-processing.scm (mia): Build against VTK 9. [inputs]: Remove vtk-7; add vtk. [source]: Add mia-vtk9.patch. * gnu/packages/patches/mia-vtk9.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Christopher Baines <mail@cbaines.net> Felix Gruber
2022-07-07gnu: pitivi: Update to 2022.06.0....* gnu/packages/patches/pitivi-fix-build-with-meson-0.60.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it. * gnu/packages/video.scm (pitivi): Update to 2022.06.0. [version]: Do not prefix with previous semver version. [inputs]{gst-plugins/selection}: Add comment about cvtracker. {python-librosa}: New input. Maxim Cournoyer
2022-07-07gnu: xnnpack: Update to 0.0-2.ae108ef....* gnu/packages/machine-learning.scm (xnnpack): Update to 0.0-2.ae108ef. * gnu/packages/patches/xnnpack-system-libraries.patch: Update. Ricardo Wurmus
2022-07-05gnu: python-pytorch: Update to 1.11.0....* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.11.0. [source](snippet): Remove now unnecessary "caffe2/onnx/backend.cc" substitution. [arguments]: Add 'remove-caffe2-onnx-scripts' phase. * gnu/packages/patches/python-pytorch-runpath.patch, gnu/packages/patches/python-pytorch-system-libraries.patch: Update. Ludovic Courtès
2022-07-04gnu: tbb: Fix building on riscv64-linux....* gnu/packages/tbb.scm (tbb)[source]: Add patch. * gnu/packages/patches/tbb-other-arches.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-07-03gnu: abcl: Update to 1.9.0....* gnu/packages/java.scm (abcl): Update to 1.9.0. * gnu/packages/patches/abcl-fix-build-xml.patch: Update for 1.9.0. Pierre Neidhardt
2022-07-03gnu: curl: Fix build on some systems....* gnu/packages/curl.scm (curl-7.84.0)[source]: Add patch to work around implicit function declaration. * gnu/packages/patches/curl-easy-lock.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-07-01gnu: mcrl2: Update to 202206.0....* gnu/packages/patches/mcrl2-fix-1687.patch, gnu/packages/patches/mcrl2-fix-counterexample.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (mcrl2): Update to 202206.0 and use them. Jan (janneke) Nieuwenhuizen
2022-06-23gnu: docker: Update to 20.10.17....* gnu/packages/docker.scm (%docker-version): Update to 20.10.17. (docker-libnetwork)[source]: Update commit according to vendor.conf. Reset revision to 1. Simplify snippet. (docker)[origin]: Remove docker-fix-tests.patch. [arguments]: Adapt 'patch-paths phase, substitute "ip6tables" and buildkit-qemu. Remove trailing #t. [native-inputs]: Replace go-1.14 by go. (docker-cli)[source]: Update hash. [arguments]: Set GO_LINKMODE to "dynamic". Remove trailing #t. [phases]{check}: Replace 'if' with 'when'. * gnu/packages/networking.scm (go-sctp): Update commit according to docker-libnetwork's vendor.conf. * gnu/packages/patches/docker-fix-tests.patch: Delete. * gnu/local.mk (dist_patch_DATA): Remove patch. Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Pierre Langlois
2022-06-22gnu: Add phoronix-test-suite....* gnu/packages/patches/phoronix-test-suite-fsdg.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/benchmark.scm (phoronix-test-suite): New variable. (gcc-toolchain*): Likewise. Maxim Cournoyer
2022-06-21gnu: cmh: Add patch to work with current fplll....* gnu/packages/patches/cmh-support-fplll.patch: New file. * gnu/packages/algebra.scm (cmh)[source]: Add patch. * gnu/local.mk (dist_patch_DATA): Register patch. Andreas Enge
2022-06-18gnu: omake: Update to 0.10.5....* gnu/packages/ocaml.scm (omake): Update to 0.10.5. * gnu/packages/patches/omake-fix-non-determinism.patch: Adjust for new version. Julien Lepiller
2022-06-17gnu: public-inbox: Fixes to allow the testsuite to run...This patch makes the public-inbox testsuite pass. Some tests are skipped, so the test coverage could likely be increased with more massaging. Perhaps the most significant change is using tini to run the testsuite so that the testsuite's sub-processes are reaped. The ‘check’ phase is based on the one from the mutter package. Thanks to Maxim Cournoyer for pointing out this solution. * gnu/packages/patches/public-inbox-fix-spawn-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add new patch. * gnu/packages/mail.scm (public-inbox)[source]: Add new patch. [arguments]<#:tests?>: Remove argument. <#:imported-modules>: Add argument. <#:modules>: Likewise. <#:phases>{qualify-paths}: Substitute path for ‘/bin/cp’. {pre-check}: Don't skip httpd-unix.t test. Remove unnecessary path substitutions for “env” and “/bin/sh”. {check}: Replace with custom version that launches the tests under tini. [native-inputs]: Add tini. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thiago Jung Bauermann
2022-06-16gnu: rocm: Update to 5.1.3....All packages updated at the same time as they have a shared version. rocclr is no longer a stand-alone package, so the previous version is kept as rocclr-4 and the current version is just the source, rocclr-src, needed by rocm-opencl-runtime. * gnu/packages/patches/rocm-opencl-runtime-3.10.0-includes.patch, gnu/packages/patches/rocm-opencl-runtime-4.3-nocltrace.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/patches/rocm-comgr-3.1.0-dependencies.patch, gnu/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch, gnu/packages/patches/rocm-opencl-runtime-4.3-noopencl.patch: Update patches. * gnu/packages/rocm.scm (rocm-cmake, rocm-device-libs, rocm-comgr, roct-thunk-interface, rocr-runtime, rocm-opencl-runtime, rocminfo, rocm-bandwidth-test): Update to 5.1.3. (roct-thunk-interface)[inputs]: Add libdrm. [native-inputs]: Add gcc:lib and pkg-config. (rocclr-src): New variable. (rocclr-4): New variable (previous version of the package). (rocm-opencl-runtime)[source]: Remove obsolete patches. [arguments]: Rewrite with gexps. Add needed #:configure-flags. [inputs]: Remove rocclr, add numactl. Signed-off-by: Ludovic Courtès <ludo@gnu.org> John Kehayias
2022-06-16gnu: Update llvm-for-rocm: Update to 5.1.3....* gnu/packages/llvm.scm (llvm-for-rocm): Update to 5.1.3, now based on llvm-14. [source]{patches}: Remove unneeded patches (add_Object and add_libraries) and add new one (linkdl). * gnu/packages/patches/llvm-roc-3.0.0-add_libraries.patch, gnu/packages/patches/llvm-roc-4.2.0-add_Object.patch: Delete files. * gnu/packages/patches/llvm-roc-5.0.0-linkdl.patch: New file. * gnu/local.mk (dist_patch_DATA): Update to match current patches. Signed-off-by: Ludovic Courtès <ludo@gnu.org> John Kehayias
2022-06-16gnu: Add python-zeep....* gnu/packages/python-web.scm (python-zeep): New variable. * gnu/packages/patches/python-zeep-Fix-pytest_httpx-test-cases.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Co-authored-by: Hartmut Goebel <h.goebel@crazy-compilers.com> Vinicius Monego
2022-06-15gnu: Add kismet....* gnu/packages/networking.scm (kismet): New variable. * gnu/local.mk: Add patch. * gnu/packages/patches/kismet-unbundle-boost.patch: New file. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Petr Hodina
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