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2017-03-16gnu: qemu: Fix CVE-2017-{2620,2630}....* gnu/packages/patches/qemu-CVE-2017-2620.patch, gnu/packages/patches/qemu-CVE-2017-2630.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/qemu.scm (qemu)[source]: Use them. Leo Famulari
2017-03-16gnu: virglrenderer: Fix CVE-2017-6386....* gnu/packages/patches/virglrenderer-CVE-2017-6386.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/spice.scm (virglrenderer)[source]: Use it. Leo Famulari
2017-03-16gnu: password-store: Fix compatibility with GnuPG 2.1.19....* gnu/packages/patches/password-store-gnupg-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/password-utils.scm (password-store)[source]: Use it. Signed-off-by: Clément Lassieur <clement@lassieur.org> Clément Lassieur
2017-03-10gnu: wget: Fix CVE-2017-6508....* gnu/packages/patches/wget-CVE-2017-6508.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/wget.scm (wget)[source]: Use it. Leo Famulari
2017-03-10gnu: hmmer: Build reproducibly....* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file. * gnu/packages/bioinformatics.scm (hmmer): Use it. Ben J. Woodcroft
2017-03-09gnu: python-pandas: Really fix build on 32bit....* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Fix confusion with same-named test. Marius Bakke
2017-03-09gnu: python-fake-factory: Add back missing patch file....This reverts the removal of "python-fake-factory-fix-build-32bit.patch" by commit ce7911ddae5d30ba73c8c9552b7d4e71268e5db3. * gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Mark H Weaver
2017-03-08gnu: python-pandas: Fix build on 32-bit....* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-pandas, python2-pandas): Use it. Marius Bakke
2017-03-08gnu: Add python-faker....* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Adjust paths. Also rename to ... * gnu/packages/patches/python-faker-fix-build-32bit.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python.scm (python-faker, python2-faker): New variables. (python-fake-factory)[properties]: Superseded by PYTHON-FAKER. (python2-fake-factory)[properties]: Superseded by PYTHON2-FAKER. (python-orator, python2-orator)[propagated-inputs]: Replace PYTHON-FAKE-FACTORY with PYTHON-FAKER. Marius Bakke
2017-03-07gnu: pcre2: Update to 10.23....* gnu/packages/pcre.scm (pcre2): Update to 10.23. [source]: Remove patch. [arguments]: Add phase to substitute /bin/echo reference. * gnu/packages/patches/pcre2-CVE-2016-3191.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Marius Bakke
2017-03-07gnu: gnupg: Update to 2.1.19....* gnu/packages/gnupg.scm (gnupg): Update to 2.1.19. [arguments]: Add 'patch-test-paths' phase and remove 'set-gnupg-home' phase. Add '--enable-gnupg-builddir-envvar' to #:configure-flags. [source]: Add 'gnupg-2.1-fix-Y2038-test-failure.patch'. * gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Leo Famulari
2017-03-06gnu: python-statsmodels: Update to 0.8.0....* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels): Update to 0.8.0. [source]: Use 'pypi-uri'. [arguments]: Add more files to matplotlib backend substitution. * gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that fails with numpy 1.12. Remove previous contents. Marius Bakke
2017-03-06gnu: python-matplotlib: Update to 2.0.0....* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Update to 2.0.0. [source]: Remove Tk backend patch, use Github instead of Sourceforge. [outputs]: Remove "doc" output. [inputs]: Add python-pyqt. [propagated-inputs]: Add python-cycler. [native-inputs]: Remove python-sphinx, python-numpydoc, texlive and texinfo. (python2-matplotlib)[native-inputs]: Add python2-functools32 and python2-subprocess32. (python-matplotlib-documentation, python2-matplotlib-documentation): New variables. * gnu/packages/patches/matplotlib-setupext-tk.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Thomas Danckaert
2017-03-06gnu: Add python2-subprocess32....* gnu/packages/python.scm (python2-subprocess32): New variable. * gnu/packages/patches/python2-subprocess32-disable-input-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Marius Bakke
2017-03-06gnu: texlive: Fix CVE-2016-10243....* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tex.scm (texlive-texmf-src): Use it. Leo Famulari
2017-03-04gnu: wxwidgets: Fix for Filezilla client....* gnu/packages/patches/wxwidgets-fix-windowGTK.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> rennes
2017-03-04gnu: kio: Fix CVE-2017-6410....* gnu/packages/patches/kio-CVE-2017-6410.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde-frameworks.scm (kio)[source]: Use it. Leo Famulari
2017-03-03gnu: arb: Update to 2.10.0....* gnu/packages/algebra.scm (arb): Update to 2.10.0. * gnu/packages/patches/arb-ldconfig.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch. Andreas Enge
2017-03-03gnu: nss, nss-certs: Update to 3.29.2....* gnu/packages/certs.scm (nss-certs): Update to 3.29.2. * gnu/packages/gnuzilla.scm (nss): Update to 3.29.2. * gnu/packages/patches/nss-pkgconfig.patch: Adapt to context changes. Marius Bakke
2017-03-03Merge branch 'python-tests'Marius Bakke
2017-03-03gnu: mupdf: Fix CVE-2017-{5896,5991}....* gnu/packages/patches/mupdf-CVE-2017-5896.patch, gnu/packages/patches/mupdf-CVE-2017-5991.patch: New files. * gnu/packages/pdf.scm (mupdf/fixed)[source]: Add patches. * gnu/local.mk (dist_patch_DATA): Add them. Signed-off-by: Leo Famulari <leo@famulari.name> Alex Vong
2017-03-02gnu: Add jacal....* gnu/packages/maths.scm (jacal): New variable. * gnu/packages/patches/jacal-fix-texinfo.patch: New file. John Darrington
2017-03-01gnu: vdirsyncer: Update to 0.15.0....* gnu/packages/dav.scm (vdirsyncer): Update to 0.15.0. [source]: Remove obsolete patch 'vdirsyncer-test-suite-slow-machines.patch'. * gnu/packages/patches/vdirsyncer-test-suite-slow-machines.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2017-02-28gnu: screen: Update to 4.5.1....* gnu/packages/screen.scm (screen): Update to 4.5.1. [source]: Remove patch. * gnu/packages/patches/screen-CVE-2017-5618.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2017-02-27Merge branch 'master' into python-testsMarius Bakke
2017-02-27gnu: gst-plugins-base: Update to 1.10.4....* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.4. [source]: Remove obsolete patch 'gst-plugins-base-fix-test-on-32bit.patch' * gnu/packages/patches/gst-plugins-base-fix-test-on-32bit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2017-02-26gnu: Remove unused patch....This is a followup to 6f9d5b2e8c861c3a1243937a26400f8394946346. * gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Marius Bakke
2017-02-26gnu: vim: Use upstream fix for CVE-2017-5953....* gnu/packages/patches/vim-CVE-2017-5953.patch: Adjust to match upstream changes. Leo Famulari
2017-02-24gnu: python-dendropy: Fix failing tests....* gnu/packages/patches/python-dendropy-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bioinformatics.scm (python-dendropy)[source]: Add patch. Ricardo Wurmus
2017-02-24gnu: python-fake-factory: Fix build on 32bit....* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-fake-factory, python2-fake-factory)[source]: Use it. Marius Bakke
2017-02-23gnu: util-linux: Fix CVE-2017-2616....* gnu/packages/patches/util-linux-CVE-2017-2616.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (util-linux)[replacement]: New field. (util-linux/fixed): New variable. Leo Famulari
2017-02-23gnu: shadow: Fix CVE-2017-2616....* gnu/packages/patches/shadow-CVE-2017-2616.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/admin.scm (shadow): Use it. Leo Famulari
2017-02-18gnu: ntfs-3g: Fix patch for CVE-2017-0358....This is a followup to commit 1a82ba660e88e731841882523084e5d878267b53. * gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: Make patch apply. Leo Famulari
2017-02-18gnu: python-pbr: Support python-sphinx>=1.2.1....* gnu/packages/patches/python-pbr-fix-man-page-support.patch: New file. * gnu/packages/python.scm (python-pbr-minimal): Use the new patch file. Danny Milosavljevic
2017-02-18gnu: vdirsyncer: Don't fail the test suite when the build machine is slow....* gnu/packages/patches/vdirsyncer-test-suite-slow-machines.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/dav.scm (vdirsyncer)[source]: Use it. Leo Famulari
2017-02-14gnu: vim: Fix CVE-2017-5953....* gnu/packages/patches/vim-CVE-2017-5953.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/vim.scm (vim)[source]: Use it. Leo Famulari
2017-02-13gnu: netsurf: Enable tests....* gnu/packages/patches/netsurf-longer-test-timeout.patch, gnu/packages/patches/netsurf-y2038-tests.patch: New patches. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/web.scm (netsurf)[source]: Use them. [native-inputs]: Add libidn, check. [inputs]: Add miscfiles. [arguments]: Remove #:tests?, add #:test-target. Add 'patch-check phase. Eric Bavier
2017-02-13gnu: netsurf: Use unbundled source....* gnu/packages/patches/netsurf-system-utf8proc.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/web.scm (netsurf)[source]: Use it. Change to unbundled source tarball. [native-inputs]: Add netsurf-buildsystem, nsgenbind. Remove flex, bison. [inputs]: Add utf8proc, libcss, libdom, libnsbmp, libnsgif, libnspsl, libnsutils, libsvgtiny. Remove expat, gperf. [arguments]: Adjust #:make-flags for netsurf-buildsystem. Delete configure phase. Adjust source directories. Eric Bavier
2017-02-13gnu: Add hubbub....* gnu/packages/web.scm (hubbub): New variable. Eric Bavier
2017-02-13gnu: netsurf: Upgrade to 3.6....* gnu/packages/web.scm (netsurf): Upgrade to 3.6. [source]: 'https' -> 'http'. Remove modules, snippet, and patches. [home-page]: 'https' -> 'http'. [arguments]: Adjust source directories. * gnu/packages/patches/netsurf-about.patch: Delete patch. * gnu/local.mk (dist_patch_DATA): Remove it. Eric Bavier
2017-02-14gnu: python-pygit2: Skip tests requiring network access....* gnu/packages/python.scm (python-pygit2, python2-pygit2)[source](patches): New field. * gnu/packages/patches/python-pygit2-disable-network-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Marius Bakke
2017-02-13Merge branch 'master' into python-testsMarius Bakke
2017-02-12gnu: screen: Fix CVE-2017-5618....* gnu/packages/patches/screen-CVE-2017-5618.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/screen.scm (screen)[source]: Use it. Leo Famulari
2017-02-12gnu: qemu: Fix CVE-2017-{5667,5898,5931}....* gnu/packages/patches/qemu-CVE-2017-5667.patch, gnu/packages/patches/qemu-CVE-2017-5898.patch, gnu/packages/patches/qemu-CVE-2017-5931.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. gnu/packages/qemu.scm (qemu)[source]: Use them. Leo Famulari
2017-02-11gnu: spice: Fix CVE-2016-9577 and CVE-2016-9578....* gnu/packages/patches/spice-CVE-2016-9577.patch, gnu/packages/patches/spice-CVE-2016-9578-1.patch, gnu/packages/patches/spice-CVE-2016-9578-2.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/spice.scm (spice)[source]: Use them. Marius Bakke
2017-02-11gnu: slurm: Update to 16.05.9.1.... * gnu/packages/parallel.scm (slurm): Update to 16.05.9.1. * gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch: Removing two contribs which are added in the new version. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Carolili
2017-02-11gnu: shadow: Update to 4.4....* gnu/packages/admin.scm (shadow): Update to 4.4. [source]: Adjust URL. * gnu/packages/patches/shadow-4.4-su-snprintf-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2017-02-09gnu: ntfs-3g: Fix CVE-2017-0358....* gnu/packages/linux.scm (ntfs-3g)[source]: Add patch. * gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Kei Kebreau
2017-02-09gnu: libvpx: Update to 1.6.1....* gnu/packages/video.scm (libvpx): Update to 1.6.1. * gnu/packages/patches/libvpx-CVE-2016-2818.patch: Adjust to indentation changes. Marius Bakke
2017-02-09gnu: vsearch: Update to 2.4.0....* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.0. [source]: Convert most operations in the snippet to patch form and adjust for 2.4.0. * gnu/packages/patches/vsearch-unbundle-cityhash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft
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