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2016-11-04gnu: python-ipython: Update to 4.0.0....* gnu/packages/python.scm (python-ipython): Update to 4.0.0. [inputs]: Keep only "readline" and "which"; move the remaining inputs to propagated-inputs, except for "python-requests" and "python-nose" which are moved to native-inputs. [propagated-inputs]: Add "python-pexpect", "python-pickleshare", "python-simplegeneric", "python-traitlets", "python-ipykernel". [native-inputs]: Add "python-testpath". [arguments]: Enable building of HTML documentation. [source]: Remove patch. * gnu/packages/patches/python-ipython-inputhook-ctype.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2016-11-03[PATCH] gnu: Add libjxr....* gnu/packages/image.scm (libjxr): New variable. * gnu/packages/patches/libjxr-fix-function-signature.patch: New file. * gnu/packages/patches/libjxr-fix-typos.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patches. Kei Kebreau
2016-11-01gnu: python-django: Update to 1.10.3 [fixes CVE-2016-{9013,9014}]....* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.3. [source]: Remove patch. * gnu/packages/patches/python-django-fix-testcase.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Marius Bakke
2016-10-30gnu: libtiff: Fix CVE-2016-5652....* gnu/packages/patches/libtiff-CVE-2016-5652.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image.scm (libtiff-fixed)[source]: Use it. Leo Famulari
2016-10-30gnu: Add openocd....* gnu/packages/embedded.scm (openocd): New variable. * gnu/packages/patches/openocd-nrf52.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the patch. Theodoros Foradis
2016-10-28gnu: libwebp: Fix CVE-2016-9085....* gnu/packages/patches/libwebp-CVE-2016-9085.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image.scm (libwebp)[source]: Use it. Leo Famulari
2016-10-26gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a....The fix from upstream did not apply cleanly due to many context changes. This was adapted by cloning mupdf 1.9a from git and fixing conflicts after applying our patches and cherry-picking upstream commit 1e03c06. This is a follow-up to 47a04fca999b91309d196afc9ebf4d8ac6f2083f. * gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a. Marius Bakke
2016-10-26gnu: notmuch: Update to 0.23.1....* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch. Marius Bakke
2016-10-25gnu: mupdf: Fix CVE-2016-8674....* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (mupdf): Use it. Kei Kebreau
2016-10-25gnu: coda: Remove bundled libraries....* gnu/packages/maths.scm (coda): Remove bundled libraries. [source]: Add patch and snippet to remove bundled zlib, pcre and expat. [inputs]: Add system zlib, pcre and expat. * gnu/packages/patches/coda-use-system-libs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thomas Danckaert
2016-10-24gnu: linux-libre@4.1: Update to 4.1.35....* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35. Remove patch. * gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Mark H Weaver
2016-10-24gnu: Add hdf-eos2....* gnu/packages/maths.scm (hdf-eos2): New variable. * gnu/packages/patches/hdf-eos2-build-shared.patch: New file. * gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file. * gnu/packages/patches/hdf-eos2-fortrantests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patches. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thomas Danckaert
2016-10-23gnu: musl: Fix CVE-2016-8859....* gnu/packages/patches/musl-CVE-2016-8859.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/musl.scm (musl)[source]: Use it. Leo Famulari
2016-10-23gnu: hop: Update to 2.5.1....* gnu/packages/scheme.scm (hop): Update to 2.5.1. [source]: Remove patch. * gnu/packages/patches/hop-bigloo-4.0b.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2016-10-22gnu: linux-libre@4.1: Add fix for CVE-2016-5195....* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (linux-libre-4.1): Add patch. Mark H Weaver
2016-10-21gnu: slim: Fix line numbers in slim-login.patch....This was causing build failures. * gnu/packages/patches/slim-login.patch: Fix line numbers. Christopher Allan Webber
2016-10-20gnu: slim: Display login message....* gnu/packages/patches/slim-login.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/display-managers.scm (slim)[source]: Use it. Eric Bavier
2016-10-20gnu: slim: Do not reset session after failed login....* gnu/packages/patches/slim-reset.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/display-managers.scm (slim)[source]: Use it. Eric Bavier
2016-10-19gnu: openssh: Fix CVE-2016-8858....* gnu/packages/patches/openssh-memory-exhaustion.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (openssh)[source]: Use it. Leo Famulari
2016-10-19gnu: lftp: Update to 4.7.3....* gnu/packages/ftp.scm (lftp): Update to 4.7.3. [source]: Use HTTPS. Remove patch. [arguments]: Add ‘disable-impure-tests’ phase. Add #:configure-flags with explicit location of readline headers. [home-page]: Use HTTPS. * gnu/packages/patches/lftp-dont-save-unknown-host-fingerprint.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2016-10-19gnu: notmuch: Enable tests....* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/mail.scm (notmuch)[source]: Use patch. [arguments]: Add verbose make flags. Add phase 'patch-notmuch-lib.el' to fix hard-coded /bin/sh. Add 'prepare-test-environment' phase to patch test shebangs and set environment. [native-inputs]: Change from 'emacs-minimal' to 'emacs-no-x'. Add dtach, gnupg, man, perl and which. Marius Bakke
2016-10-18gnu: kobodeluxe: Indicate origin of kobodeluxe-paths.patch....* gnu/packages/patches/kobodeluxe-paths.patch: Update header, pointing to Debian tarball for provenance. Christopher Allan Webber
2016-10-18gnu: Add kobodeluxe....* gnu/packages/games.scm (kobodeluxe): New variable. * gnu/packages/patches/kobodeluxe-paths.patch: New file. * gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch: New file. * gnu/packages/patches/kobodeluxe-const-charp-conversion.patch: New file. * gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch: New file. * gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch: New file. * gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Stephen Webber
2016-10-18gnu: torsocks: Update to 2.2.0....* gnu/packages/patches/torsocks-dns-test.patch: Delete file. * gnu/local.mk: Remove it. * gnu/packages/tor.scm (torsocks): Update to 2.2.0. [source]: Remove patch. Change method from 'git-fetch' to 'url-fetch'. Remove 'file-name'. [arguments]: Remove 'bootstrap' phase. [native-inputs]: Remove autoconf, automake and libtool. Also remove obsoleted perl-test-harness. [home-page]: Use https URL. (define-module): Don't import perl. Signed-off-by: Marius Bakke <mbakke@fastmail.com> ng0
2016-10-17gnu: jasper: Update to 1.900.5....* gnu/packages/image.scm (jasper): Update to 1.900.5. [source]: Remove patches. [native-inputs]: Remove unzip. * gnu/packages/patches/jasper-CVE-2007-2721.patch, gnu/packages/patches/jasper-CVE-2008-3520.patch, gnu/packages/patches/jasper-CVE-2008-3522.patch, gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch, gnu/packages/patches/jasper-CVE-2014-8137.patch, gnu/packages/patches/jasper-CVE-2014-8138.patch, gnu/packages/patches/jasper-CVE-2014-8157.patch, gnu/packages/patches/jasper-CVE-2014-8158.patch, gnu/packages/patches/jasper-CVE-2014-9029.patch, gnu/packages/patches/jasper-CVE-2016-1577.patch, gnu/packages/patches/jasper-CVE-2016-1867.patch, gnu/packages/patches/jasper-CVE-2016-2089.patch, gnu/packages/patches/jasper-CVE-2016-2116.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Efraim Flashner
2016-10-17gnu: irrlicht: Update to 1.8.4....* gnu/packages/games.scm (irrlicht): Update to 1.8.4. [arguments]: Delete phase "apply-patch/mesa-10-fix". [native-inputs]: Remove "patch/mesa-10-fix". * gnu/packages/patches/irrlicht-mesa-10.patch: Delete file. * gnu/local.mk (dist_path_DATA): Remove irrlicht patch. Ricardo Wurmus
2016-10-17gnu: artanis: Remove implied $(DESTDIR) usage....* gnu/packages/patches/artanis-fix-Makefile.in.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/guile.scm (artanis)[source]: Use patch. [arguments]: Remove DESTDIR from #:make-flags. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Adonay Felipe Nogueira
2016-10-17gnu: node: Update to 6.8.0....Remove <https://debbugs.gnu.org/23744> and <https://debbugs.gnu.org/23723> workaround. * gnu/packages/node.scm (node): Update to 6.8.0. (node)[arguments]: Disabled more tests. Remove custom 'patch-shebangs' phase. Manually patch npm script shebang in new 'patch-npm-shebang' phase. * gnu/packages/patches/node-9077.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patches. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Al McElrath
2016-10-16gnu: hdf4: Fix non-x86 architectures....* gnu/packages/patches/hdf4-architectures.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/maths.scm (hdf4)[source]: Add patch. Andreas Enge
2016-10-16gnu: Add arm-none-eabi-gcc-6....* gnu/packages/embedded.scm (gcc-arm-none-eabi-6): New variable. * gnu/packages/patches/gcc-6-arm-none-eabi-multilib.patch: New file. * gnu/packages/patches/gcc-6-cross-environment-variables.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the patches. Theodoros Foradis
2016-10-15gnu: gd: Fix CVE-2016-8670....* gnu/packages/patches/gd-CVE-2016-8670.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gd.scm (gd)[source]: Use it. Leo Famulari
2016-10-14gnu: freeimage: Fix CVE-2016-5684....* gnu/packages/image.scm (freeimage)[source]: Add patch. * gnu/packages/patches/freeimage-CVE-2016-5684.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2016-10-13gnu: ghostscript: Fix CVE-2013-5653 and CVE-2016-{7976,7978,7979,8602}....* gnu/packages/patches/ghostscript-CVE-2013-5653.patch, gnu/packages/patches/ghostscript-CVE-2016-7976.patch, gnu/packages/patches/ghostscript-CVE-2016-7978.patch, gnu/packages/patches/ghostscript-CVE-2016-7979.patch, gnu/packages/patches/ghostscript-CVE-2016-8602.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field. (ghostscript/fixed): New variable. (ghostscript/x): Inherit 'ghostscript/fixed'. Mark H Weaver
2016-10-12gnu: Add hdf4...* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables. * gnu/packages/patches/hdf4-reproducibility.patch: New file. * gnu/packages/patches/hdf4-shared-fortran.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patches. Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thomas Danckaert
2016-10-11gnu: icecat: Update to 45.3.0-gnu1-beta. Add fixes from Firefox ESR 45.4.0....Includes fixes for CVE-2016-5250, CVE-2016-5257, CVE-2016-5261, CVE-2016-5270, CVE-2016-5272, CVE-2016-5274, CVE-2016-5276, CVE-2016-5277, CVE-2016-5278, CVE-2016-5280, CVE-2016-5281, and CVE-2016-5284. * gnu/packages/gnuzilla.scm (mozilla-patch): New procedure. (icecat): Update to 45.3.0-gnu1. [source]: Add alternate source URI for the beta release. Update patches. [inputs]: Replace 'sqlite' input with a customized sqlite with SQLITE_ENABLE_DBSTAT_VTAB support. [native-inputs]: Add 'which'. * gnu/packages/patches/icecat-avoid-bundled-includes.patch: Rename to... * gnu/packages/patches/icecat-avoid-bundled-libraries.patch: ... and adapt to version 45. * gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch, gnu/packages/patches/icecat-CVE-2016-2819.patch, gnu/packages/patches/icecat-CVE-2016-2821.patch, gnu/packages/patches/icecat-CVE-2016-2824.patch, gnu/packages/patches/icecat-CVE-2016-2828.patch, gnu/packages/patches/icecat-CVE-2016-2831.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Update accordingly. Mark H Weaver
2016-10-11gnu: qemu: Patch CVE-2016-857{6,7,8}....* gnu/packages/qemu.scm (qemu)[source]: Add patches. * gnu/packages/patches/qemu-CVE-2016-8576.patch, gnu/packages/patches/qemu-CVE-2016-8577.patch, gnu/packages/patches/qemu-CVE-2016-8578.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them. Efraim Flashner
2016-10-09gnu: wpa-supplicant: Update to 2.6....* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Update to 2.6. Remove 'patches' field. * gnu/packages/patches/wpa-supplicant-CVE-2015-5310.patch, gnu/packages/patches/wpa-supplicant-CVE-2015-5314.patch, gnu/packages/patches/wpa-supplicant-CVE-2015-5315.patch, gnu/packages/patches/wpa-supplicant-CVE-2015-5316.patch, gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch, gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch, gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch, gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch, gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Signed-off-by: Leo Famulari <leo@famulari.name> Marius Bakke
2016-10-09gnu: libupnp: Fix CVE-2016-6255....* gnu/packages/patches/libupnp-CVE-2016-6255.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/libupnp.scm (libupnp): Use it. Leo Famulari
2016-10-08gnu: Add cl-clx....* gnu/packages/lisp.scm (cl-clx, sbcl-clx, ecl-clx): New variables. * gnu/packages/patches/clx-remove-demo.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: 宋文武 <iyzsong@gmail.com> Andy Patterson
2016-10-06gnu: Add hdf-eos5....* gnu/packages/maths.scm (hdf-eos5): New variable. * gnu/packages/patches/hdf-eos5-build-shared.patch: New file. * gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file. * gnu/packages/patches/hdf-eos5-fix-szip.patch: New file. * gnu/packages/patches/hdf-eos5-fortrantests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patches. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thomas Danckaert
2016-10-05gnu: libxvmc: Fix CVE-2016-7953....* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxvmc)[replacement]: New field. (libxvmc/fixed): New variable. Leo Famulari
2016-10-05gnu: libxv: Fix CVE-2016-5407....* gnu/packages/patches/libxv-CVE-2016-5407.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxv)[replacement]: New field. (libxv/fixed): New variable. Leo Famulari
2016-10-05gnu: libxtst: Fix CVE-2016-{7951,7952}....* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxtst)[replacement]: New field. (libxtst/fixed): New variable. Leo Famulari
2016-10-05gnu: libxrender: Fix CVE-2016-{7949,7950}....* gnu/packages/patches/libxrender-CVE-2016-7949.patch, gnu/packages/patches/libxrender-CVE-2016-7950.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xorg.scm (libxrender)[replacement]: New field. (libxrender/fixed): New variable. Leo Famulari
2016-10-05gnu: libxrandr: Fix CVE-2016-{7947,7948}....* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxrandr)[replacement]: New field. (libxrandr/fixed): New variable. Leo Famulari
2016-10-05gnu: libxi: Fix CVE-2016-{7945,7946}....* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxi)[replacement]: New field. (libxi/fixed): New variable. Leo Famulari
2016-10-05gnu: libxfixes: Fix CVE-2016-7944....* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxfixes)[replacement]: New field. (libxfixes/fixed): New variable. Leo Famulari
2016-10-05gnu: libx11: Fix CVE-2016-{7942,7943}....* gnu/packages/patches/libx11-CVE-2016-7942.patch, gnu/packages/patches/libx11-CVE-2016-7943.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xorg.scm (libx11)[replacement]: New field. (libx11/fixed): New variable. Leo Famulari
2016-10-05gnu: gsl: Disable failing tests on i686....* gnu/packages/patches/gsl-test-i686.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (gsl)[source](patches): New field. Ludovic Courtès
2016-10-04gnu: rush: Update to 1.8....* gnu/packages/rush.scm (rush): Update to 1.8. [source]: Remove 'patches'. * gnu/packages/patches/cpio-gets-undeclared.patch, gnu/packages/patches/rush-CVE-2013-6889.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Ludovic Courtès
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