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2022-08-19gnu: perl-class-methodmaker: Build reproducibly.Vagrant Cascadian
* gnu/packages/patches/perl-class-methodmaker-reproducible.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/perl.scm (perl-class-methodmaker)[source]: Use patch.
2022-08-16gnu: python-mypy: Update to 0.971.Marius Bakke
* gnu/packages/patches/python-mypy-12332.patch, gnu/packages/patches/python-mypy-use-sys-path.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-check.scm (python-mypy): Update to 0.971. [source](patches): Remove. [arguments]: Skip one test.
2022-08-15guile-fibers: Backport the ‘epoll instance is dead’ bugfix.Maxime Devos
This fixes some indeterministic test failures for gnunet-scheme observed while developing gnunet-scheme. The following checks were made: All dependents compile for x86_64: $ ./pre-inst-env guix build shepherd gnunet-scheme guix-build-coordinator nar-herder guix-data-service guile-fibers --system=x86_64-linux Everything except guix-build-coordinator (which depends on the non-cross-compilable sqitch) cross-compile from x86_64 to aarch64-linux-gnu: $ ./pre-inst-env guix build shepherd gnunet-scheme nar-herder guile-fibers --system=x86_64-linux --target=aarch64-linux-gnu I tried testing for reproducibility but the check phase took to long. However, you can compare the hash you get against the hash I got: $ ./pre-inst-env guix hash --serializer=nar $(./pre-inst-env guix build guile-fibers --no-grafts --system=x86_64-linux) 0qsaqx27b6q2s22h7y93417ijpkwl6gc1fhhck8aha6bvmawk5h0 I tried an emulated build for another architecture, but there the tests took overly long. There were no lint warnings for guile-fibers. * gnu/packages/patches/guile-fibers-epoll-instance-is-dead.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register the patch. * gnu/packages/guile-xyz.scm (guile-fibers)[source]{patches}: Use the patch. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-12gnu: lrcalc: Update to 2.1.vicvbcun
* gnu/packages/algebra.scm (lrcalc): Update to 2.1. [source]: Remove patch. * gnu/packages/patches/lrcalc-includes.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Unregister file. Signed-off-by: Andreas Enge <andreas@enge.fr>
2022-08-12gnu: lcalc: Update to 2.0.5.vicvbcun
* gnu/packages/sagemath.scm (lcalc): Update to 2.0.5. * gnu/packages/patches/lcalc-default-parameters-1.patch, gnu/packages/patches/lcalc-default-parameters-2.patch, gnu/packages/patches/lcalc-lcommon-h.patch, gnu/packages/patches/lcalc-using-namespace-std.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Unregister files. Signed-off-by: Andreas Enge <andreas@enge.fr>
2022-08-11gnu: libvirt, python-libvirt: Update to 8.6.0.Marius Bakke
* gnu/packages/patches/libvirt-add-install-prefix.patch: Refresh patch. * gnu/packages/virtualization.scm (libvirt): Update to 8.6.0. (python-libvirt): Update to 8.6.0. [arguments]: Remove, as the default test phase works fine.
2022-08-11gnu: qtwayland: Fix build with GCC 11.Marius Bakke
* gnu/packages/patches/qtwayland-gcc-11.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/qt.scm (qtwayland)[source](patches): New field.
2022-08-11gnu: fuse@2: Prepare for newer glibc.Marius Bakke
* gnu/packages/patches/fuse-glibc-2.34.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/linux.scm (fuse)[source](patches): Add the patch. [arguments]: Add force-bootstrap phase. [native-inputs]: Add AUTOCONF, AUTOMAKE, GETTEXT-MINIMAL, and LIBTOOL.
2022-08-09gnu: gnupg: Patch CVE-2022-34903.Efraim Flashner
* gnu/packages/gnupg.scm (gnupg)[replacement]: New field. (gnupg/replacement): New variable. * gnu/packages/patches/gnupg-CVE-2022-34903.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2022-08-09gnu: aspell: Patch CVE-2019-25051.Efraim Flashner
* gnu/packages/aspell.scm (aspell)[source]: Add patch. * gnu/packages/patches/aspell-CVE-2019-25051.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2022-08-08gnu: unzip: Patch for CVE-2022-0529 and CVE-2022-0530.Efraim Flashner
* gnu/packages/compression.scm (unzip)[replacement]: New field. (unzip/fixed): New variable. * gnu/packages/patches/unzip-CVE-2022-0529+CVE-2022-0530.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2022-08-07gnu: libtirpc: Fix CVE-2021-46828.Efraim Flashner
* gnu/packages/onc-rpc.scm (libtirpc)[replacement]: New field. (libtirpc/fixed): New variable. (libtirpc-hurd)[source]: Add patch. * gnu/packages/patches/libtirpc-CVE-2021-46828.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2022-08-07gnu: shishi: Update to 1.0.3.Efraim Flashner
* gnu/packages/kerberos.scm (shishi): Update to 1.0.3. [source]: Remove patch. [arguments]: Remove configure flag overriding libgcrypt detection. * gnu/packages/patches/shishi-fix-libgcrypt-detection.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-08-05gnu: mumps: Update to 5.5.1FELŠÖCI Marek
* gnu/packages/maths.scm (mumps): Update to 5.5.1. Stop applying patches as the build configuration has been updated upstream. Allow for further optimized BLR compression by specifying the -DBLR_MT build option. * gnu/packages/patches/mumps-build-parallelism.patch: File removed. * gnu/packages/patches/mumps-shared-libseq.patch: File removed. * gnu/packages/patches/mumps-shared-mumps.patch: File removed. * gnu/packages/patches/mumps-shared-pord.patch: File removed. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-04gnu: ruby-anystyle: Initialize dictionary files.Philip McGrath
For the GDBM and Marshal dictionary adapters to be useful with their default settings, we must initialize their data files during the package build: upstream would initialize them lazily, but that doesn't work with an immutable installation directory (at least, not without more complex patches). Otherwise, we would always end up rebuilding the dictionary at startup, which is “slow” and “not recommended”. * gnu/packages/patches/ruby-anystyle-fix-dictionary-populate.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ruby.scm (ruby-anystyle)[patches]: Use it. [arguments]<#:phases>: Add 'populate-dictionaries' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-04gnu: ruby-anystyle-data: Don't write to installed gem.Philip McGrath
* gnu/packages/patches/ruby-anystyle-data-immutable-install.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ruby.scm (ruby-anystyle-data)[patches]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-04gnu: Add ruby-latex-decode.Philip McGrath
* gnu/packages/patches/ruby-latex-decode-fix-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ruby.scm (ruby-latex-decode): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-04gnu: Add aoflagger.Sharlatan Hellseher
* gnu/packages/astronomy.scm (aoflagger): New variable. * gnu/packages/patches/aoflagger-use-system-provided-pybind11.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-04gnu: Add barony.Timotej Lazar
* gnu/packages/games.scm (barony): New variable. * gnu/packages/patches/barony-fix-textures.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-03gnu: nsis: Update to 3.08.Vivien Kraus
* gnu/packages/patches/nsis-source-date-epoch.patch: Drop this patch. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/patches/nsis-env-passthru.patch: Adjust the patch. * gnu/packages/installers.scm (make-nsis): Update to 3.08. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-01gnu: Add fail2ban.muradm
* gnu/packages/admin.scm (fail2ban): New variable. * gnu/packages/patches/fail2ban-0.11.2_CVE-2021-32749.patch, gnu/packages/patches/fail2ban-0.11.2_fix-setuptools-drop-2to3.patch, gnu/packages/patches/fail2ban-0.11.2_fix-test-suite.patch, gnu/packages/patches/fail2ban-paths-guix-conf.patch, gnu/packages/patches/fail2ban-python310-server-action.patch, gnu/packages/patches/fail2ban-python310-server-actions.patch, gnu/packages/patches/fail2ban-python310-server-jails.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-07-31gnu: jami: Apply upstream patch that fixes a usability issue.Maxim Cournoyer
* gnu/packages/patches/jami-fix-esc-bug.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/jami.scm (%jami-sources): Apply it.
2022-07-31gnu: libjami: Update to 20220726.1515.da8d1da.Maxim Cournoyer
* gnu/packages/patches/jami-fix-crash-on-quit.patch: Delete file. * gnu/packages/patches/jami-images-loading.patch: Likewise. * gnu/packages/patches/jami-libclient-audio-managers.patch: Likewise. * gnu/packages/patches/jami-memory-usage.patch: Likewise. * gnu/local.mk (dist_patch_DATA): De-register removed patches. * gnu/packages/jami.scm (%jami-version): Update to 20220726.1515.da8d1da. (libjami)[configure-flags]: Add '--disable-static'. (jami-apply-custom-patches): Adjust for top directory renaming. (%ffmpeg-default-configure-flags): Add muxer support for g726 and g726le. Add demuxer support for g723_1, g726 and g726le. Add encoder/decoder support for g726, g726le and g723_1. Add decoder support for g729. (ffmpeg-jami)[patches]: Add 'libopusenc-reload-packet-loss-at-encode'. (jami-libclient)[native-inputs]: New field. [inputs]: Add ffmpeg-jami and libxkbcommon. [propagated-inputs]: Replace qtbase-5 with qtbase.
2022-07-31gnu: qttools: Rename to qttools-5.Maxim Cournoyer
Automated with: git grep -l qttools | xargs sed 's/\bqttools\b/\0-5/g' -i git checkout NEWS
2022-07-27gnu: libphonenumber: Build reproducibly.Antero Mejr
* gnu/packages/messaging.scm (libphonenumber): Add patch. * gnu/packages/patches/libphonenumber-reproducible-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. Signed-off-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
2022-07-24gnu: dbxfs: Update to 1.0.63.Efraim Flashner
* gnu/packages/file-systems.scm (dbxfs): Update to 1.0.63. * gnu/packages/patches/dbxfs-remove-sentry-sdk.patch: Update patch.
2022-07-23gnu: PHP: Fix test failure with newer cURL.Marius Bakke
* gnu/packages/patches/php-curl-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/php.scm (php)[source](patches): Add it.
2022-07-23gnu: PHP: Update to 7.4.30.Marius Bakke
* gnu/packages/php.scm (php): Update to 7.4.30. [source](patches): Remove obsolete patch. * gnu/packages/patches/php-openssl_x509_checkpurpose_basic.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-07-23gnu: eigen: Update to 3.4.0.vicvbcun
* gnu/packages/algebra.scm (eigen): Update to 3.4.0. * gnu/packages/patches/eigen-fix-strict-aliasing-bug.patch: New file. * gnu/packages/patches/eigen-remove-openmp-error-counting.patch, gnu/packages/patches/eigen-stabilise-sparseqr-test.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Update accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-18gnu: libgeotiff: Update to 1.7.1.Felix Gruber
* gnu/packages/geo.scm (libgeotiff): Update to 1.7.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-13services: docker: Fix race condition.Oleg Pykhalov
Fixes <https://issues.guix.gnu.org/38432>. * gnu/packages/patches/containerd-create-pid-file.patch: New file. * gnu/local.mk (dist_patch_DATA): Add this. * gnu/packages/docker.scm (containerd)[source]: Add this patch. * gnu/services/docker.scm (containerd-shepherd-service): Add #:pid-file and #:pid-file-timeout. * gnu/services/docker.scm (docker-shepherd-service): Add --containerd flag. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-07-13gnu: emacs-hyperbole: Update to 8.0.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-hyperbole): Update to 8.0.0. [arguments]<#:include>: Use %default-include. <#:phases>: Add build fix. * gnu/packages/patches/emacs-hyperbole-toggle-messaging.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Delete reference to removed file.
2022-07-12gnu: pokerth: Fix build and modernize package.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/51093>. * gnu/packages/games.scm (pokerth) [source]: Apply patch [inputs]: Use new style. [phases]: Delete trailing #t. Use gexps. {fix-paths}: Remove the gsasl and libircclient related substitutions.
2022-07-12gnu: llvm-3.7, llvm-3.8: Fix build with gcc.Greg Hogan
* gnu/packages/patches/clang-runtime-3.7-fix-build-with-python3.patch, gnu/packages/patches/llvm-3.x.1-fix-build-with-gcc.patch: New files. * gnu/packages/llvm.scm (clang-runtime-3.7, llvm-3.7, llvm-3.8): Use patches. * gnu/local.mk: Register patches. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-12gnu: llvm-8: Fix build with gcc-10.Greg Hogan
* gnu/packages/patches/llvm-8-fix-build-with-gcc-10.patch: New file. * gnu/packages/llvm.scm (clang-8, clang-runtime-8): Update to 8.0.1. * gnu/packages/llvm.scm (llvm-8): Use patch and update to 8.0.1. * gnu/local.mk: Register patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-11gnu: xf86-video-mach64: Update to 6.9.7.Efraim Flashner
* gnu/packages/xorg.scm (xf86-video-mach64): Update to 6.9.7. [source]: Remove patches. * gnu/packages/patches/xf86-video-mach64-bool-to-boolean.patch, gnu/packages/patches/xf86-video-mach64-glibc-2.20.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them.
2022-07-07gnu: mia: Build against VTK 9.Felix Gruber
* gnu/packages/image-processing.scm (mia): Build against VTK 9. [inputs]: Remove vtk-7; add vtk. [source]: Add mia-vtk9.patch. * gnu/packages/patches/mia-vtk9.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-07-07gnu: pitivi: Update to 2022.06.0.Maxim Cournoyer
* gnu/packages/patches/pitivi-fix-build-with-meson-0.60.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it. * gnu/packages/video.scm (pitivi): Update to 2022.06.0. [version]: Do not prefix with previous semver version. [inputs]{gst-plugins/selection}: Add comment about cvtracker. {python-librosa}: New input.
2022-07-07gnu: xnnpack: Update to 0.0-2.ae108ef.Ricardo Wurmus
* gnu/packages/machine-learning.scm (xnnpack): Update to 0.0-2.ae108ef. * gnu/packages/patches/xnnpack-system-libraries.patch: Update.
2022-07-05gnu: python-pytorch: Update to 1.11.0.Ludovic Courtès
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.11.0. [source](snippet): Remove now unnecessary "caffe2/onnx/backend.cc" substitution. [arguments]: Add 'remove-caffe2-onnx-scripts' phase. * gnu/packages/patches/python-pytorch-runpath.patch, gnu/packages/patches/python-pytorch-system-libraries.patch: Update.
2022-07-04gnu: tbb: Fix building on riscv64-linux.Efraim Flashner
* gnu/packages/tbb.scm (tbb)[source]: Add patch. * gnu/packages/patches/tbb-other-arches.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2022-07-03gnu: abcl: Update to 1.9.0.Pierre Neidhardt
* gnu/packages/java.scm (abcl): Update to 1.9.0. * gnu/packages/patches/abcl-fix-build-xml.patch: Update for 1.9.0.
2022-07-03gnu: curl: Fix build on some systems.Efraim Flashner
* gnu/packages/curl.scm (curl-7.84.0)[source]: Add patch to work around implicit function declaration. * gnu/packages/patches/curl-easy-lock.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2022-07-01gnu: mcrl2: Update to 202206.0.Jan (janneke) Nieuwenhuizen
* gnu/packages/patches/mcrl2-fix-1687.patch, gnu/packages/patches/mcrl2-fix-counterexample.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (mcrl2): Update to 202206.0 and use them.
2022-06-23gnu: docker: Update to 20.10.17.Pierre Langlois
* gnu/packages/docker.scm (%docker-version): Update to 20.10.17. (docker-libnetwork)[source]: Update commit according to vendor.conf. Reset revision to 1. Simplify snippet. (docker)[origin]: Remove docker-fix-tests.patch. [arguments]: Adapt 'patch-paths phase, substitute "ip6tables" and buildkit-qemu. Remove trailing #t. [native-inputs]: Replace go-1.14 by go. (docker-cli)[source]: Update hash. [arguments]: Set GO_LINKMODE to "dynamic". Remove trailing #t. [phases]{check}: Replace 'if' with 'when'. * gnu/packages/networking.scm (go-sctp): Update commit according to docker-libnetwork's vendor.conf. * gnu/packages/patches/docker-fix-tests.patch: Delete. * gnu/local.mk (dist_patch_DATA): Remove patch. Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-06-22gnu: Add phoronix-test-suite.Maxim Cournoyer
* gnu/packages/patches/phoronix-test-suite-fsdg.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/benchmark.scm (phoronix-test-suite): New variable. (gcc-toolchain*): Likewise.
2022-06-21gnu: cmh: Add patch to work with current fplll.Andreas Enge
* gnu/packages/patches/cmh-support-fplll.patch: New file. * gnu/packages/algebra.scm (cmh)[source]: Add patch. * gnu/local.mk (dist_patch_DATA): Register patch.
2022-06-18gnu: omake: Update to 0.10.5.Julien Lepiller
* gnu/packages/ocaml.scm (omake): Update to 0.10.5. * gnu/packages/patches/omake-fix-non-determinism.patch: Adjust for new version.
2022-06-17gnu: public-inbox: Fixes to allow the testsuite to runThiago Jung Bauermann
This patch makes the public-inbox testsuite pass. Some tests are skipped, so the test coverage could likely be increased with more massaging. Perhaps the most significant change is using tini to run the testsuite so that the testsuite's sub-processes are reaped. The ‘check’ phase is based on the one from the mutter package. Thanks to Maxim Cournoyer for pointing out this solution. * gnu/packages/patches/public-inbox-fix-spawn-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add new patch. * gnu/packages/mail.scm (public-inbox)[source]: Add new patch. [arguments]<#:tests?>: Remove argument. <#:imported-modules>: Add argument. <#:modules>: Likewise. <#:phases>{qualify-paths}: Substitute path for ‘/bin/cp’. {pre-check}: Don't skip httpd-unix.t test. Remove unnecessary path substitutions for “env” and “/bin/sh”. {check}: Replace with custom version that launches the tests under tini. [native-inputs]: Add tini. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-16gnu: rocm: Update to 5.1.3.John Kehayias
All packages updated at the same time as they have a shared version. rocclr is no longer a stand-alone package, so the previous version is kept as rocclr-4 and the current version is just the source, rocclr-src, needed by rocm-opencl-runtime. * gnu/packages/patches/rocm-opencl-runtime-3.10.0-includes.patch, gnu/packages/patches/rocm-opencl-runtime-4.3-nocltrace.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/patches/rocm-comgr-3.1.0-dependencies.patch, gnu/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch, gnu/packages/patches/rocm-opencl-runtime-4.3-noopencl.patch: Update patches. * gnu/packages/rocm.scm (rocm-cmake, rocm-device-libs, rocm-comgr, roct-thunk-interface, rocr-runtime, rocm-opencl-runtime, rocminfo, rocm-bandwidth-test): Update to 5.1.3. (roct-thunk-interface)[inputs]: Add libdrm. [native-inputs]: Add gcc:lib and pkg-config. (rocclr-src): New variable. (rocclr-4): New variable (previous version of the package). (rocm-opencl-runtime)[source]: Remove obsolete patches. [arguments]: Rewrite with gexps. Add needed #:configure-flags. [inputs]: Remove rocclr, add numactl. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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