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2020-05-05gnu: Add grocsvs....* gnu/packages/bioinformatics.scm (grocsvs): New variable. * gnu/packages/patches/grocsvs-dont-use-admiral.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2020-05-04gnu: Add collectd...* gnu/packages/monitoring.scm (collectd): New variable * gnu/local.mk (dist_patch_DATA): Add new patch * gnu/packages/patches/collectd-5.11.0-noinstallvar.patch: New file Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun
2020-05-04gnu: Add gromacs....* gnu/packages/chemistry.scm (gromacs): New variable. * gnu/packages/patches/gromacs-tinyxml2.patch: New file... * gnu/local.mk (dist_patch_DATA): ...add it here. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vincent Legoll
2020-05-02gnu: Add musl-cross....* gnu/packages/patches/musl-cross-locate.patch: New file. * gnu/packages/heads.scm: New file. * gnu/local.mk (dist_patch_DATA): Add one. (GNU_SYSTEM_MODULES): Add the other. Danny Milosavljevic
2020-05-02gnu: extempore: Update to 0.8.6....* gnu/packages/music.scm (extempore): Update to 0.8.6. [snippets]: Delete bundled dependencies. [patches]: Add it. * gnu/packages/patches/extempore-unbundle-external-dependencies.patch: Patch CMakeLists.txt to use system libraries. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Giacomo Leidi
2020-05-02gnu: llvm-for-extempore: Update to 3.8....* gnu/packages/llvm.scm (llvm-for-extempore): Update to 3.8. [source]: Use upstream patched source. * gnu/packages/patches/llvm-for-extempore.patch: Delete due to source being already patched. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Giacomo Leidi
2020-04-30gnu: VLC: Update to 3.0.10....* gnu/packages/patches/vlc-fix-test_libvlc_slaves.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/video.scm (vlc): Update to 3.0.10. [source]: Remove obsolete patch. [arguments]: Remove obsolete workarounds for libssh and fribidi compatibility issues in 'patch-source' phase. Leo Famulari
2020-04-29gnu: OpenLDAP: Update to 2.4.50 [fixes CVE-2019-{13057,13565}]....* gnu/packages/openldap.scm (openldap)[replacement]: Use openldap-2.4.50. (openldap/fixed): Replace with ... (openldap-2.4.50): ... new variable. * gnu/packages/patches/openldap-CVE-2020-12243.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2020-04-28gnu: openldap: Fix CVE-2020-12243....* gnu/packages/openldap.scm (openldap)[replacement]: New field. (openldap/fixed): New variable. * gnu/packages/patches/openldap-CVE-2020-12243.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2020-04-28gnu: emacs-telega: Test Emacs environment on startup....Print a more helpful error message when someone attempts to run Telega on an incompatible Emacs (e.g a 32-bit Emacs without wide ints). * gnu/packages/patches/emacs-telega-test-env.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/emacs-xyz.scm (emacs-telega)[source]: Use it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Diego Nicola Barbato
2020-04-25gnu: arm-trusted-firmware: Update to 2.3....* gnu/packages/firmware (make-arm-trusted-firmware): Update to 2.3. [source]: Remove hdcp patch. * gnu/packages/patches/arm-trusted-firmware-disable-hdcp.patch: Remove patch. * gnu/local.mk: Update accordingly. Vagrant Cascadian
2020-04-24gnu: biber: Downgrade to 2.11....Biber 2.12 is incompatible with biblatex 3.11, which is what's currently packaged. This is a followup to 41a010875ba4108e666f11fc111cf5bb5dcf5464. * gnu/packages/tex.scm (biber): Downgrade to 2.11. Ludovic Courtès
2020-04-24gnu: biber: Address test failures....* gnu/packages/patches/biber-sortinithash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tex.scm (biber)[source]: Use it. Ludovic Courtès
2020-04-24gnu: llvm: Add 10.0.0....* gnu/packages/llvm.scm (llvm-10, clang-runtime-10, clang-10) (clang-toolchain-10, llvm-9, clang-runtime-9, clang-9) (clang-toolchain-9): New variables. (llvm, clang, clang-runtime, clang-toolchain): Redefine as aliases to the '-9' bindings. * gnu/packages/patches/clang-10.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2020-04-22gnu: maths: dune-*: Update to version 2.7...* gnu/packages/maths.scm (dune-*): Update to version 2.7. (dune-uggrid)[source] Download from Git, as no release tarball for version 2.7 exists. (dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no tags for version 2.7 exist (yet?). (dune-istl)[source](patches) Add patch required to build version 2.7 without openmpi. * gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2020-04-21gnu: emacs-dired-toggle-sudo: Update to 1.0-0.13bbe52....* gnu/packages/emacs-xyz.scm (emacs-dired-toggle-sudo): Update to 1.0-0.13bbe52. * gnu/packages/patches/emacs-dired-toggle-sudo-emacs-26.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Leo Famulari <leo@famulari.name> Michael Rohleder
2020-04-20gnu: Add u-boot-pinebook-pro-rk3399....* gnu/packages/bootloaders (u-boot-pinebook-pro-rk3399): New variable. * gnu/packages/patches/u-boot-DT-for-Pinebook-Pro.patch: New file. * gnu/packages/patches/u-boot-add-boe-nv140fhmn49-display.patch: New file. * gnu/packages/patches/u-boot-gpio-keys-binding-cons.patch: New file. * gnu/packages/patches/u-boot-leds-common-binding-con.patch: New file. * gnu/packages/patches/u-boot-support-Pinebook-Pro-laptop.patch: New file. * gnu/packages/patches/u-boot-video-rockchip-fix-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Add new patches. * gnu/bootloader/u-boot.scm (install-pinebook-pro-rk3399-u-boot, u-boot-pinebook-pro-rk3399-bootloader): New variable. Co-authored-by: Jan Nieuwenhuizen <janneke@gnu.org> Vagrant Cascadian
2020-04-20gnu: libqalculate: Fix libcurl gnutls CA cert bundle file....* gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (libqalculate)[source]: Use it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> R Veera Kumar
2020-04-17gnu: python-jedi: Fix test failure on some file systems....Reported by sirgazil on #guix. * gnu/packages/patches/python-jedi-sort-project-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-xyz.scm (python-jedi)[source](patches): Add it. [arguments]: Run tests more verbosely while at it. Marius Bakke
2020-04-15Merge branch 'version-1.1.0'Ludovic Courtès
2020-04-15gnu: Remove libvpx@1.7....* gnu/packages/patches/libvpx-use-after-free-in-postproc.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/video.scm (libvpx-1.7): Remove variable. Marius Bakke
2020-04-15gnu: python-jedi: Update to 0.17.0....* gnu/packages/python-xyz.scm (python-jedi): Update to 0.17.0. [source](patches): Remove. * gnu/packages/patches/python-jedi-deleted-variables.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2020-04-14gnu: txr: Call ./configure manually instead of patching....* gnu/packages/lisp.scm (txr)[source]: Remove patch. [arguments]: Add ‘--prefix’ to #:configure-flags. Use a custom ‘configure’ phase. * gnu/packages/patches/txr-shell.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2020-04-11gnu: gdm: Don't offer GNOME when it's not in the system profile....Fixes <https://bugs.gnu.org/37831>. Reported by Pierre Neidhardt <mail@ambrevar.xyz>. * gnu/packages/patches/gdm-default-session.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gdm)[source]: Use it. Ludovic Courtès
2020-04-11gnu: dbacl: Update to 1.14.1....* gnu/packages/textutils.scm (dbacl): Update to 1.14.1. [source]: Add patch to fix build with current glibc. [arguments]: (Try to) bootstrap only once. * gnu/packages/patches/dbacl-include-locale.h.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2020-04-10gnu: sdl-pango: Shorten file name of patch....* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapTo.patch: Rename to... * gnu/packages/patches/sdl-pango-header-guard.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/sdl.scm (sdl-pango): Likewise. Ludovic Courtès
2020-04-10gnu: akonadi: Shorten file name of patch....This ensures we stay below the POSIX tar file name length limit. * gnu/packages/patches/akonadi-Revert-Make-installation-properly-relo.patch: Rename to... * gnu/packages/patches/akonadi-not-relocatable.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/kde-pim.scm (akonadi): Likewise. Ludovic Courtès
2020-04-10gnu: binutils: Shorten file names of MinGW patches....This ensures we stay below the POSIX tar file name length limit. * gnu/packages/patches/binutils-mingw-w64-reproducible-import-libraries.patch: Rename to... * gnu/packages/patches/binutils-mingw-w64-deterministic.patch: ... this. * gnu/packages/patches/binutils-mingw-w64-specify-timestamp.patch: Rename to... * gnu/packages/patches/binutils-mingw-w64-timestamp.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/cross-base.scm (cross-binutils): Likewise. Ludovic Courtès
2020-04-10gnu: sdl-pango: Shorten file name of patch....* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapTo.patch: Rename to... * gnu/packages/patches/sdl-pango-header-guard.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/sdl.scm (sdl-pango): Likewise. Ludovic Courtès
2020-04-10gnu: akonadi: Shorten file name of patch....This ensures we stay below the POSIX tar file name length limit. * gnu/packages/patches/akonadi-Revert-Make-installation-properly-relo.patch: Rename to... * gnu/packages/patches/akonadi-not-relocatable.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/kde-pim.scm (akonadi): Likewise. Ludovic Courtès
2020-04-10gnu: binutils: Shorten file names of MinGW patches....This ensures we stay below the POSIX tar file name length limit. * gnu/packages/patches/binutils-mingw-w64-reproducible-import-libraries.patch: Rename to... * gnu/packages/patches/binutils-mingw-w64-deterministic.patch: ... this. * gnu/packages/patches/binutils-mingw-w64-specify-timestamp.patch: Rename to... * gnu/packages/patches/binutils-mingw-w64-timestamp.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/cross-base.scm (cross-binutils): Likewise. Ludovic Courtès
2020-04-09installer: Allow Alt+Shift toggle from non-Latin keyboard layouts....Fixes <https://bugs.gnu.org/40493>. * gnu/installer/newt/keymap.scm (%non-latin-layouts): New variable. (%non-latin-variants): New variable. (%latin-layout+variants): New variable. (toggleable-latin-layout): New procedure to compute combined layouts. (run-keymap-page): Use it. (keyboard-layout->configuration): Apply it in config.scm. (run-layout-page): Mention Alt+Shift. * gnu/installer/keymap.scm (kmscon-update-keymap): Pass on XKB options. * gnu/installer/record.scm (<installer>): Adjust code comments. * gnu/installer.scm (apply-keymap): Pass on XKB options. (installer-steps): Adjust code comments. * gnu/packages/patches/kmscon-runtime-keymap-switch.patch: Apply XKB options. Florian Pelz
2020-04-08gnu: higan: Update to 110....* gnu/packages/emulators.scm (higan): Update to 110. [source]: Switch to new repository. [inputs]: Add libxrandr, replace sdl with sdl2. [home-page]: Use new URL. [license]: Switch license. * gnu/packages/patches/higan-remove-march-native-flag.patch: Delete file. * gnu/local.mk: Reflect patch removal. Nicolas Goaziou
2020-04-07gnu: icecat: Update to 68.7.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2020-6821, CVE-2020-6822, CVE-2020-6825, CVE-2020-6827, and CVE-2020-6828. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version. Mark H Weaver
2020-04-07gnu: julia: Upgrade to 1.3.1....* gnu/packages/julia.scm (libuv-julia): Upgrade to 2.0.0-1.35b1504. (libunwind-julia): New variable. (llvm-patch): Rename to ... (julia-patch): ... this. Update to 1.3.1. (llvm-julia): Adjust patch-set based on above change. Adjust indent. (julia): Update to 1.3.1. [source]: Add patch. [arguments]: Adjust custom 'prepare-deps (llvm-patch): Rename to ... (julia-patch): ... this. Update to 1.3.1. (llvm-julia): Adjust patch-set based on above change. (julia): Upgrade to 1.3.1. [arguments]: Adjust custom 'prepare-deps phase based on changed inputs. Remove most of 'hardcode-soname-map. Adjust 'fix-include-and-link-paths. Add new 'fix-precompile phase. Adjust custom 'disable-broken-tests phase. Add new 'make-wrapper phase. Adjust make-flags. [inputs]: Add p7zip, mbedtls-apache, curl libssh2. Remove openspecfun, fftw, fftwf, python2-virtualenv, rmath. Replace libunwind with libunwind-julia, custom suitesparse with system suitesparse, custom dsfmt with system dsfmt. [native-search-paths]: Add JULIA_DEPOT_PATH. * gnu/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Nicolò Balzarotti
2020-04-05gnu: mediastreamer2: Move the tester files and HTML doc to separate outputs....The tester binary generated gets installed with about 20 MiB of data files, and the HTML documentation weighs another 500 KiB or so. Move them to separate outputs. * gnu/packages/patches/mediastreamer-srtp2.patch: Rename to... * gnu/packages/patches/mediastreamer2-srtp2.patch: ...this, to please 'guix lint'. * gnu/local.mk (dist_patch_DATA): Adapt. * gnu/packages/linphone.scm (mediastreamer2)[patches]: Likewise. [outputs]: Add the "doc" and "tester" outputs. [phases]: Add a phase to move the HTML doc and tester binary and data to the 'doc' and 'tester' outputs, respectively. [description]: Remove the unicode characters surrounding the word 'powerful'. Maxim Cournoyer
2020-04-06gnu: mediastreamer2: Enable SRTP2....* gnu/packages/patches/mediastreamer-srtp2.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linphone.scm (mediastreamer2)[source]: Use it. Raghav Gururajan
2020-04-04gnu: Add xplanet....* gnu/packages/patches/xplanet-1.3.1-cxx11-eof.patch, gnu/packages/patches/xplanet-1.3.1-libdisplay_DisplayOutput.cpp.patch, gnu/packages/patches/xplanet-1.3.1-libimage_gif.c.patch, gnu/packages/patches/xplanet-1.3.1-xpUtil-Add2017LeapSecond.cpp.patch: New files. * gnu/packages/astronomy.scm (xplanet): New variable. [source]: Use patches. * gnu/local.mk (dist_patch_DATA): Add them. Signed-off-by: Eric Bavier <bavier@member.fsf.org> R Veera Kumar
2020-04-04gnu: mingw: Add mingw-w64 reproducibility patches....These patches were originally found at the debian mingw-w64 team's mingw-w64 repo, and should improve the reproducibility of our mingw-w64 toolchain. * gnu/packages/patches/mingw-w64-dlltool-temp-prefix.patch: New file. * gnu/packages/patches/mingw-w64-reproducible-gendef.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/mingw.scm (make-mingw-w64): Apply patches. Carl Dong
2020-04-03gnu: icecat: Update to 68.6.1-guix0-preview1 [security fixes]....Includes fixes for CVE-2020-6819 and CVE-2020-6820. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version. Mark H Weaver
2020-04-03gnu: cross-base: Fix PACKAGE-WITH-EXTRA-PATCHES...This also removes the execute bit from the patches added. Not sure how or why those were set in the first place. * gnu/packages/cross-base.scm (package-with-extra-patches): Imitate PACKAGE-WITH-PATCH instead of using it. * gnu/packages/patches/binutils-mingw-w64-reproducible-import-libraries.patch: Remove execute bit. * gnu/packages/patches/binutils-mingw-w64-specify-timestamp.patch: Remove execute bit. Carl Dong
2020-04-03gnu: calibre: Fix build with python-msgpack >= 1.0....* gnu/packages/patches/calibre-msgpack-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ebook.scm (calibre)[source](patches): Add it. Marius Bakke
2020-04-02gnu: cross-base: Add mingw-w64 specific binutils patches....These patches were originally found at the debian mingw-w64 team's binutils repo, and should improve the reproducibility of our mingw-w64 toolchain. * gnu/packages/patches/binutils-mingw-w64-reproducible-import-libraries.patch: New file. * gnu/packages/patches/binutils-mingw-w64-specify-timestamp.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/cross-base.scm (cross-binutils): Apply relevant patches if target is mingw-w64. (package-with-extra-patches): New procedure. Carl Dong
2020-04-02gnu: sdl2: Update to 2.0.12....* gnu/packages/patches/sdl2-mesa-compat.patch: Delete file. * gnu/packages/sdl.scm (sdl2): Update to 2.0.12. [source]: Drop patch that was included in this release. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Timotej Lazar
2020-04-02gnu: Add beancount....* gnu/packages/finance.scm (beancount): New variable. * gnu/packages/patches/beancount-disable-googleapis-fonts.patch: New file. * gnu/local.mk: Add it. Christopher Lemmer Webber
2020-04-02gnu: python-aiohttp: Enable tests...* gnu/packages/python-web.scm (python-aiohttp) [arguments]: Enable tests [native-inputs] Add test dependencies [patches] Add test case patch * gnu/packages/patches/python-aiohttp-3.6.2-no-warning-fail.patch: New file * gnu/local.mk (dist_patch_DATA): Add it Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun
2020-03-31gnu: pam-krb5: Fix CVE-2020-10595....* gnu/packages/patches/pam-krb5-CVE-2020-10595.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/admin.scm (pam-krb5)[source]: Use it. Leo Famulari
2020-03-30gnu: reprotest: Update to 0.7.14....* gnu/packages/diffoscope (reprotest): Update to 0.7.14. * gnu/packages/patches/reprotest-support-guix.patch: Remove file. * gnu/local.mk [dist_patch_DATA]: Update accordingly. Vagrant Cascadian
2020-03-29gnu: GnuPG: Really use ~/.guix-profile/bin/pinentry by default....Fixes <https://bugs.gnu.org/24076>. * gnu/packages/patches/gnupg-default-pinentry.patch: New file. Use $HOME to find the user's Guix profile and installed pinentry. * gnu/local.mk (dist_patch_DATA): Add the patch. * gnu/packages/gnupg.scm (gnupg)[source]: Use it. Leo Famulari
2020-03-29gnu: Update hash-extender....* gnu/packages/crypto.scm (hash-extender): Update to newer commit. * gnu/packages/patches/hash-extender-test-suite.patch: The patch was merged upstream, no need to apply it anymore. * gnu/local.mk (dist_patch_DATA): Unregister the patch file. Jakub Kądziołka