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2015-05-22gnu: Add rsem.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (rsem): New variable. * gnu/packages/patches/rsem-makefile.patch: New file.
2015-05-22gnu: fuse: Add fix for CVE-2015-3202.Mark H Weaver
* gnu/packages/patches/fuse-CVE-2015-3202.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/linux.scm (fuse): Add patch.
2015-05-21gnu: r: Apply patch to fix linking against R.Ricardo Wurmus
* gnu/packages/patches/r-fix-15899.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/statistics.scm (r)[source]: Use it.
2015-05-20gnu: bitlbee: Update to 3.4.Mark H Weaver
* gnu/packages/patches/bitlbee-configure-doc-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/messaging.scm (bitlbee): Update to 3.4. Add patch. [inputs]: Remove 'zlib'.
2015-05-14gnu: qemu: Update to 2.3.0; add fix for CVE-2015-3456.Mark H Weaver
* gnu/packages/patches/qemu-CVE-2015-3456.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/qemu.scm (qemu-headless): Update to 2.3.0. Add patch.
2015-05-13gnu: icecat: Apply fixes for CVE-2015-{0797,2708,2710,2713,2716}.Mark H Weaver
* gnu/packages/patches/icecat-CVE-2015-0797.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch, gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch, gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch, gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2716.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat): Add patches.
2015-05-12gnu: inetutils: Update to 1.9.3.Ludovic Courtès
* gnu/packages/patches/inetutils-syslogd.patch: Remove. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/admin.scm (inetutils): Bump to 1.9.3. [source]: Remove patch. [native-inputs]: Remove.
2015-05-11gnu: wpa-supplicant: Add security fixes.Mark H Weaver
* gnu/packages/patches/wpa-supplicant-2015-2-fix.patch, gnu/packages/patches/wpa-supplicant-2015-3-fix.patch, gnu/packages/patches/wpa-supplicant-2015-4-fix-pt1.patch, gnu/packages/patches/wpa-supplicant-2015-4-fix-pt2.patch, gnu/packages/patches/wpa-supplicant-2015-4-fix-pt3.patch, gnu/packages/patches/wpa-supplicant-2015-4-fix-pt4.patch, gnu/packages/patches/wpa-supplicant-2015-4-fix-pt5.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/admin.scm (wpa-supplicant-light)[source]: Add patches.
2015-05-10gnu: Add tvtime.Alex Kost
* gnu/packages/tv.scm, gnu/packages/patches/tvtime-gcc41.patch, gnu/packages/patches/tvtime-pngoutput.patch, gnu/packages/patches/tvtime-videodev2.patch, gnu/packages/patches/tvtime-xmltv.patch: New files. * gnu-system.am (GNU_SYSTEM_MODULES): Add package. (dist_patch_DATA): Add patches.
2015-05-10Remove leftover patches.Cyril Roelandt
* gnu/packages/patches/guix-test-networking.patch: Delete it. * gnu/packages/patches/libtool-skip-tests.patch: Delete it. * gnu/packages/patches/python-sqlite-3.8.4-test-fix.patch: Delete it. * gnu/packages/patches/udev-gir-libtool.patch: Delete it. * gnu-system.am (dist_patch_DATA): Remove them as well.
2015-05-09gnu: wicd: Add patch to fix template instantiation.Ludovic Courtès
* gnu/packages/patches/wicd-template-instantiation.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/wicd.scm (wicd)[source]: Use it.
2015-05-08gnu: subversion: Add fix for sqlite-3.8.9.Mark H Weaver
* gnu/packages/patches/subversion-sqlite-3.8.9-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/version-control.scm (subversion): Add patch.
2015-05-07gnu: linux-libre: Update to 4.0.2.Mark H Weaver
* gnu/packages/patches/linux-libre-libreboot-fix.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/linux.scm (linux-libre): Update to 4.0.2. Remove patch.
2015-05-07gnu: Add WebkitGTK 2.4.8.Ricardo Wurmus
* gnu/packages/webkit.scm (webkitgtk-2.4): New variable. * gnu/packages/patches/webkitgtk-2.4.8-gmutexlocker.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2015-05-07gnu: serf: Apply upstream fixes.Mark H Weaver
* gnu/packages/patches/serf-comment-style-fix.patch, gnu/packages/patches/serf-deflate-buckets-test-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/web.scm (serf): Add patches. Remove 'remove-non-c89-comment' phase.
2015-05-06gnu: hop: Remove use of patchelf.Eric Bavier
* gnu/packages/patches/hop-linker-flags.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/scheme.scm (source)[patches]: Use it. (arguments)[phases]: Remove patch-rpath phase. [modules, imported-modules]: Remove. (native-inputs): Remove field.
2015-05-05gnu: fltk: Fix undefined symbol errors for shared libraries.Eric Bavier
* gnu/packages/patches/fltk-shared-lib-defines.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/fltk.scm (source)[patches]: New field.
2015-05-04gnu: curl: Update to 7.42.1.Mark H Weaver
* gnu/packages/patches/curl-support-capath-on-gnutls-conf.patch, gnu/packages/patches/curl-support-capath-on-gnutls.patch: Remove files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/curl.scm (curl): Update to 7.42.1. Remove patches.
2015-05-04gnu: gcc-5.1: Add specific libvtv patch.Ludovic Courtès
* gnu/packages/patches/gcc-5.0-libvtv-runpath.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gcc.scm (gcc-5.1)[source]: Use it.
2015-05-01Merge branch 'master' into core-updatesLudovic Courtès
2015-05-01gnu: qt: Add patch for i686 build problem.Taylan Ulrich Bayırlı/Kammer
See <https://bugreports.qt.io/browse/QTBUG-45205>. * gnu/packages/patches/qt5-conflicting-typedefs.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/qt.scm (qt): Add the patch.
2015-04-30gnu: gcc: Add $libdir to the RUNPATH of libvtv.so.Ludovic Courtès
* gnu/packages/gcc.scm (gcc-4.9): Inherit from GCC-4.8. [source]: Add 'gcc-libvtv-runpath.patch'. (gcc-5.1): Inherit from GCC-4.9. [source]: Use patches from GCC-4.9. * gnu/packages/patches/gcc-libvtv-runpath.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2015-04-29gnu: Remove gstreamer-0.10 and gst-plugins-base-0.10.宋文武
* gnu/packages/gstreamer.scm (gstreamer-0.10, gst-plugins-base-0.10): Remove variables. * gnu/packages/patches/gstreamer-0.10-bison3.patch, gnu/packages/patches/gstreamer-0.10-silly-test.patch: Remove files. * gnu-system.am (dist_patch_DATA): Remove them.
2015-04-28gnu: cmake: Update to 3.2.2.宋文武
* gnu/packages/cmake.scm (cmake): Update to 3.2.2. * gnu/packages/patches/cmake-fix-tests.patch: Skip test for BundleUtilities.
2015-04-26Merge branch 'master' into core-updates.Andreas Enge
2015-04-26Merge branch 'wip-glib' into master.Andreas Enge
Conflicts: gnu/packages/package-management.scm
2015-04-24gnu: Add gitolite.David Thompson
* gnu/packages/version-control.scm (gitolite): New variable. * gnu/packages/patches/gitolite-openssh-6.8-compat.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2015-04-23gnu: wpa-supplicant: Add fix for CVE-2015-1863.Mark H Weaver
* gnu/packages/patches/wpa-supplicant-CVE-2015-1863.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/admin.scm (wpa-supplicant): Add patch.
2015-04-22gnu: perl: Fix Module::Pluggable for symlink forests.Eric Bavier
* gnu/packages/patches/perl-module-pluggable-search.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/perl.scm (perl)[source]: Add patch.
2015-04-22gnu: gobject-introspection: Update to 1.44.0.宋文武
* gnu/packages/glib.scm (gobject-introspection): Update to 1.44.0. [source]: Use mirror://gnome. [arguments]<#:phases>: Remove. * gnu/packages/patches/gobject-introspection-cc.patch: Rewrite to set os.environ['CC'] in 'giscanner/__init__.py'.
2015-04-22gnu: python-pycairo: Fix build with with python-3.4.3.宋文武
* gnu/packages/patches/pycairo-wscript.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gtk.scm (python-pycairo)[source]: Use it. [build-system]: Use waf-build-system. [native-inputs]: Add python-waf. [arguments]<#:phases>: Use 'modify-phases'. Add 'patch-waf phase. * gnu/packages/gtk.scm (python2-pycairo): Adjust accordingly.
2015-04-22gnu: python-pycairo: Fix build with with python-3.4.3.宋文武
* gnu/packages/patches/pycairo-wscript.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gtk.scm (python-pycairo)[source]: Use it. [build-system]: Use waf-build-system. [native-inputs]: Add python-waf. [arguments]<#:phases>: Use 'modify-phases'. Add 'patch-waf phase. * gnu/packages/gtk.scm (python2-pycairo): Adjust accordingly.
2015-04-19gnu: Add Perl Net-Amazon-S3.Eric Bavier
* gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/web.scm (perl-net-amazon-s3): New variable.
2015-04-17Merge branch 'master' into core-updatesMark H Weaver
Conflicts: gnu-system.am gnu/packages/gstreamer.scm
2015-04-15gnu: qt-4: Do not set $LDFLAGS since that triggerred a build failure.Ludovic Courtès
Fixes the build failure at <http://hydra.gnu.org/build/379884/log/raw>: g++ -licui18n -Wl,-O1 [...] -o ../../../../bin/assistant [...] ld: warning: libQtCLucene.so.4, needed by /tmp/nix-build-qt-4.8.6.drv-0/qt-everywhere-opensource-src-4.8.6/lib/libQtHelp.so, not found (try using -rpath or -rpath-link) /tmp/nix-build-qt-4.8.6.drv-0/qt-everywhere-opensource-src-4.8.6/lib/libQtHelp.so: undefined reference to `QCLucenePhraseQuery::getTerms() const' [...] * gnu/packages/patches/qt4-ldflags.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/qt.scm (qt-4)[source]: Use it. [arguments]: Remove 'setenv' call in 'configure' phase.
2015-04-14gnu: qt-5: Allow the use of DT_RUNPATH for libQt5WebEngineCore.so.Ludovic Courtès
* gnu/packages/patches/qt5-runpath.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/qt.scm (qt)[source]: Use it.
2015-04-14gnu: linux-libre: Remove linux-libre-vblank-fix.patch.Mark H Weaver
* gnu/packages/patches/linux-libre-vblank-fix.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/linux.scm (linux-libre): Remove patch.
2015-04-13gnu: emacs: Do not keep references to the entries of the build-time $PATH.Ludovic Courtès
This reduces the number of references of the output from 54 to 31, removing references notably to gcc, expat, glib:bin, ld-wrapper-0, texinfo, pkg-config, make, gawk, binutils, etc. Reported by David Thompson. * gnu/packages/patches/emacs-exec-path.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/emacs.scm (emacs)[source]: Use it.
2015-04-13gnu: Add upower.Andy Wingo
* gnu/packages/gnome.scm (upower): New variable. * gnu/packages/patches/upower-builddir.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-04-12gnu: gnutls: Update to 3.4.0.Mark H Weaver
* gnu/packages/patches/gnutls-fix-duplicate-manpages.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnutls.scm (gnutls)[source]: Update to 3.4.0. Add patch. [arguments]: Pass --without-p11-kit to 'configure'. [propagated-inputs]: Use 'nettle' instead of 'nettle-2'. Add 'libidn'.
2015-04-11gnu: elfutils: Work around PTRACE_ATTACH-induced test failures.Ludovic Courtès
* gnu/packages/patches/elfutils-tests-ptrace.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/elf.scm (elfutils)[source]: Use it.
2015-04-10gnu: libtool: Leave out the test suite workarounds.Ludovic Courtès
They are no longer needed since the latest ld-wrapper changes (commit 51d0cd9.) * gnu/packages/patches/libtool-skip-tests2.patch: New file. * gnu/packages/autotools.scm (libtool)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it.
2015-04-10gnu: curl: Update to 7.41.0. Support CURLOPT_CAPATH on GnuTLS.Tomáš Čech
Fixes <http://bugs.gnu.org/20121>. * gnu/packages/patches/curl-gss-api-fix.patch: Delete file. * gnu/packages/patches/curl-support-capath-on-gnutls.patch, gnu/packages/patches/curl-support-capath-on-gnutls-conf.patch: New files. * gnu-system.am (dist_patch_DATA): Add new patches and remove old one. * gnu/packages/curl.scm (curl): Update to 7.41.0. Add new patches and remove old one. Disable one unit test. Modified-By: Mark H Weaver <mhw@netris.org>
2015-04-09gnu: python-2: Restore python-libffi-mips-n32-fix.patch.Mark H Weaver
This patch was removed in 08c045091e8d8da3b4c677540ed577e8f2448b0d, but it's still needed for python-2. * gnu/packages/patches/python-libffi-mips-n32-fix.patch: Restore it. * gnu-system.am (dist_patch_DATA): Add it back.
2015-04-10python: Update to 3.4.3Cyril Roelandt
* gnu/packages/python.scm (python): Update from 3.3.5 to 3.4.3. * gnu/packages/patches/python-fix-tests.patch: Update the required test fixes. * gnu/packages/patches/python-libffi-mips-n32-fix.patch: Remove it... * gnu-system.am (dist_patch_DATA): ... and do not reference it here.
2015-04-09Merge branch 'master' into core-updatesLudovic Courtès
2015-04-09gnu: gcc: Do not pass -dynamic-linker to linker when !shared on arm.Mark H Weaver
Fixes <http://bugs.gnu.org/20102>. * gnu/packages/patches/gcc-arm-link-spec-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gcc.scm (gcc-4.8, gcc-4.9): Add patch. * gnu/packages/cross-base.scm (cross-gcc): Preserve patches from gcc-4.8. Co-Authored-By: Ludovic Courtès <ludo@gnu.org>
2015-04-08gnu: Add geoclue.Andy Wingo
* gnu/packages/gnome.scm (geoclue): New variable. * gnu/packages/patches/geoclue-config.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-04-08gnu: inetutils: Apply syslogd patch.Ludovic Courtès
* gnu/packages/patches/inetutils-syslogd.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/admin.scm (inetutils)[source]: Use it. [native-inputs]: New field.
2015-04-08Merge branch 'master' into core-updates宋文武
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