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2020-08-28gnu: emacs: Update to 27.1.Mark H Weaver
* gnu/packages/emacs.scm (emacs): Update to 27.1. [source]: In snippet, use 'find-files' to find 'eshell/esh-groups.el' if it exists, but gracefully handle its absence. [arguments]: Add "--with-cairo" to configure-flags. Add 'restore-emacs-pdmp' and 'make-compressed-files-writable' phases. Explicitly return #t from 'install-site-start' phase. [inputs]: Add cairo, pango, harfbuzz, jansson, and gmp. Remove imagemagick. (emacs-next): Remove variable. (emacs-minimal, emacs-xwidgets): Use 'package/inherit'. [arguments]: Remove 'restore-emacs-pdmp' phase. (emacs-no-x): Use 'package/inherit'. [arguments]: Remove "--with-cairo" from configure-flags. Remove 'restore-emacs-pdmp' phase. [inputs]: Remove cairo, pango, and harfbuzz. (emacs-no-x-toolkit): Use 'package/inherit'. [arguments]: Remove 'restore-emacs-pdmp' phase. Remove superfluous quasiquote+unquote-splicing pair. (emacs-wide-int): Use 'package/inherit'. (guile-emacs): Use 'package/inherit'. [arguments]: Remove "--with-cairo" from configure-flags. Remove 'restore-emacs-pdmp' phase. * gnu/packages/patches/emacs-ignore-empty-xim-styles.patch, gnu/packages/patches/emacs-source-date-epoch.patch: Adapt to apply cleanly to emacs-27.1. * gnu/packages/patches/emacs-exec-path.patch: Replace with the previous contents of 'emacs27-exec-path.patch', but remove the superfluous comment about it being "like emacs-exec-path.patch, but for Emacs 27". * gnu/packages/patches/emacs27-exec-path.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove 'emacs27-exec-path.patch'.
2020-08-27gnu: sssd: Pass '--localstatedir=/var' and '--sysconfdir=/etc'.Ludovic Courtès
This ensures notably that libnss_sss looks for the mmap cache files in the right place, /var/lib/sss/mc, rather than in the store. * gnu/packages/patches/sssd-system-directories.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/sssd.scm (sssd)[source]: Use it. [arguments]: Pass "--localstatedir" and "--sysconfdir".
2020-08-27gnu: vcflib: Use shared libraries.Efraim Flashner
* gnu/packages/bioinformatics.scm (vcflib)[source]: Add patch. Add snippet to adjust files for new locations. [inputs]: Add fastahack, smithwaterman, tabixpp, xz. [native-inputs]: Add pkg-config. Remove the package-source of fastahack, fsom, smithwaterman, tabixpp. [arguments]: Remove make-flags. Add custom phase to add the output lib directory to the rpath. Adjust custom 'unpack-submodule-sources for the change in native-inputs. Adjust custom 'install phase to also install libraries and headers. * gnu/packages/patches/vcflib-use-shared-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-08-27gnu: xorg-server: Update replacement to 1.20.9 [security-fixes].Mark H Weaver
Includes fixes for CVE-2020-1436, CVE-2020-14345, CVE-2020-14346, and CVE-2020-14361. * gnu/packages/xorg.scm (xorg-server/fixed): Update to 1.20.9. * gnu/packages/patches/xorg-server-CVE-2020-14347.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-08-25gnu: icecat: Update to 68.12.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2020-15663, CVE-2020-15664, and CVE-2020-15669. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2020-08-20gnu: libmhash: Fix use-after-free in tests.Eric Bavier
* gnu/packages/patches/libmhash-hmac-fix-uaf.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mcrypt.scm (libmhash)[source]: Use it.
2020-08-19gnu: unknown-horizons: Fix build with python@3.8 and python-pytest@5.Tobias Geerinckx-Rice
* gnu/packages/games.scm (unknown-horizons)[source]: Add patch. [arguments]: Add a ‘fix-tests-with-pytest>=4’ phase. [native-inputs]: Add python-distro. * gnu/packages/patches/unknown-horizons-python-3.8-distro.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-08-19gnu: xf86-video-geode: Remove unnecessary patch.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (xf86-video-geode)[source]: Remove patch. * gnu/packages/patches/xf86-video-geode-glibc-2.20.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-08-19gnu: Add transcode.Raghav Gururajan
* gnu/packages/video.scm (transcode): New variable. * gnu/packages/patches/transcode-ffmpeg.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add liblouisutdml.Raghav Gururajan
* gnu/packages/language.scm (liblouisutdml): New variable. * gnu/packages/patches/liblouisutdml-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add ldns.Raghav Gururajan
* gnu/packages/dns.scm (ldns): New variable. * gnu/packages/patches/ldns-drill-examples.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add seed.Raghav Gururajan
* gnu/packages/gnome.scm (seed): New variable. * gnu/packages/patches/seed-webkit.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add dee.Raghav Gururajan
* gnu/packages/gnome.scm (dee): New variable. * gnu/packages/patches/dee-vapi.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add opensles.Raghav Gururajan
* gnu/packages/audio.scm (opensles): New variable. * gnu/packages/patches/opensles-add-license-file.patch: New file. * gnu/local.mk (opensles-add-license-file.patch): New reference. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add libofa.Raghav Gururajan
* gnu/packages/audio.scm (libofa): New variable. * gnu/packages/patches/libofa-ftbfs-1.diff: New file. * gnu/packages/patches/libofa-curl.diff: New file. * gnu/packages/patches/libofa-ftbfs-2.diff: New file. * gnu/local.mk (dist_patch_DATA): Add them. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add libquicktime.Raghav Gururajan
* gnu/packages/video.scm (libquicktime): New variable. * gnu/packages/patches/libquicktime-ffmpeg.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-16gnu: webkitgtk: Expose all font locations to the bubblewrap sandbox.Leo Prikler
Fixes <https://issues.guix.gnu.org/41174> and <https://issues.guix.gnu.org/42618>. The webkitgtk library relied on by Epiphany and others uses bubblewrap to sandbox its process. This sandbox was only exposing fonts relative to XDG_DATA_HOME. Extend it so that it honors font locations specified via XDG_DATA_DIRS as well, which is what Guix uses. * gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/webkit.scm (webkitgtk)[source]<patches>: Use it. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2020-08-16gnu: ola: Build with libmicrohttpd 0.9.71.Tobias Geerinckx-Rice
* gnu/packages/lighting.scm (ola)[source]: Update to 0.10.7-0.5d88293. [source]: Use GIT-FETCH & GIT-FILE-NAME. Remove patch. [native-inputs]: Add autoconf, automake, and libtool. * gnu/packages/patches/ola-readdir-r.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-08-16gnu: Add dbxfs.Efraim Flashner
* gnu/packages/file-systems.scm (dbxfs): New variable. * gnu/packages/patches/dbxfs-remove-sentry-sdk.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-08-15gnu: gvfs: Fix build with libplist 2.2.0.Kei Kebreau
* gnu/packages/gnome.scm (gvfs)[source]: Add patch. * gnu/packages/patches/gvfs-add-support-for-libplist-2.2.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-08-13gnu: opencv: Fix build with Jasper 2.0.19.Tobias Geerinckx-Rice
* gnu/packages/image-processing.scm (opencv)[source]: Add patch. * gnu/packages/patches/opencv-fix-build-of-grfmt_jpeg2000.cpp.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-08-12gnu: freedink-engine: Fix SDL hints.Jesse Gibbons
* gnu/packages/games.scm: freedink: [patches]: Add fix. * gnu/packages/patches/freedink-engine-fix-sdl-hints.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-08-11gnu: clang-runtime-3.5: Fix build.Ricardo Wurmus
* gnu/packages/patches/clang-runtime-3.5-libsanitizer-mode-field.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/llvm.scm (clang-runtime-3.5): Add patch.
2020-08-09gnu: python-alembic: Update to 1.4.2.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-alembic): Update to 1.4.2. [source]: Remove patch. * gnu/packages/patches/python-alembic-exceptions-cause.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-08-08gnu: lib2geom: Update to commit 17e0d21f.Maxim Cournoyer
* gnu/packages/patches/lib2geom-enable-assertions.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Unregister it. * gnu/packages/graphics.scm (lib2geom): Update to commit 17e0d21f0afc8489656f9184bff7ad024a42394a, and remove obsolete patch.
2020-08-06gnu: json-c: Fix CVE-2020-12762.Efraim Flashner
* gnu/packages/web.scm (json-c)[replacement]: New field. (json-c-0.13, json-c-0.12)[source]: Add patch. (json-c/fixed): New variable. * gnu/packages/patches/json-c-CVE-2020-12762.patch, gnu/packages/patches/json-c--0.13-CVE-2020-12762.patch, gnu/packages/patches/json-c--0.12-CVE-2020-12762.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
2020-08-05gnu: pjproject: Update the pkg-config patch.Maxim Cournoyer
* gnu/packages/patches/pjproject-fix-pkg-config-ldflags.patch: Update patch.
2020-08-03gnu: pjproject: Fix problem in pkg-config file.Maxim Cournoyer
* gnu/packages/patches/pjproject-correct-the-cflags-field.patch: Add patch. * gnu/packages/patches/pjproject-fix-pkg-config-ldflags.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register the new patches. * gnu/packages/telephony.scm (pjproject): Use them. * gnu/packages/jami.scm (pjproject-jami): Remove a patch from pjproject-jami that is already applied against pjproject.
2020-08-03gnu: emacs: Ignore empty XIM styles.Leo Prikler
As of libx11 version 1.6.10, xim may be NULL, which causes a segmentation fault in the execution of ARRAYELTS. As a cautionary measure, we short-circuit this logic. * gnu/packages/patches/emacs-ignore-empty-xim-styles.patch: New file. * gnu/packages/emacs.scm (emacs emacs-next)[patches]: Use it. * gnu/local.mk: Register it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-03gnu: Add python-onnx.Vinicius Monego
* gnu/packages/machine-learning.scm (python-onnx): New variable. * gnu/packages/patches/python-onnx-use-system-googletest.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-01gnu: Add Remake.Eric Bavier
* gnu/packages/debug.scm (remake): New variable. * gnu/packages/patches/remake-impure-dirs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-08-01gnu: xorg-server: Fix CVE-2020-14347 via graft.Mark H Weaver
* gnu/packages/patches/xorg-server-CVE-2020-14347.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (xorg-server/fixed): New variable. (xorg-server)[replacement]: New field. (xorg-server-wayland): Use package/inherit.
2020-07-31gnu: Add blender@2.79b.Mark H Weaver
Restore blender@2.79b, the last version that does not require OpenGL 3, and therefore the last version to work on many older computers. Note that this commit relies on blender-2.79-newer-ffmpeg.patch and blender-2.79-python-3.7-fix.patch, which were left in the tree when blender@2.79b was previously removed in commit 1f14453eedfede4626a78321c66a009c9997bee4. * gnu/packages/patches/blender-2.79-gcc8.patch, gnu/packages/patches/blender-2.79-gcc9.patch, gnu/packages/patches/blender-2.79-oiio2.patch, gnu/packages/patches/blender-2.79-python-3.8-fix.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/graphics.scm (blender-2.79): New variable.
2020-07-31gnu: Add bpftrace.John Soo
* gnu/packages/linux.scm (bpftrace): New variable. * gnu/packages/patches/bpftrace-disable-bfd-disasm.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-07-30gnu: python-slugify: Update to 4.0.1.Tanguy Le Carrour
* gnu/packages/patches/python-slugify-depend-on-unidecode.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-web.scm (python-slugify): Update to 4.0.1. [source] Drop patch. Signed-off-by: Marius Bakke <marius@gnu.org>
2020-07-30gnu: Add nfs4-acl-tools.Lars-Dominik Braun
* gnu/packages/nfs.scm (nfs4-acl-tools): New variable. * gnu/packages/patches/nfs4-acl-tools-0.3.7-fixpaths.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Marius Bakke <marius@gnu.org>
2020-07-29gnu: sphinxbase: Fix building.Efraim Flashner
* gnu/packages/speech.scm (sphinxbase)[source]: Add patch. * gnu/packages/patches/sphinxbase-fix-doxygen.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-07-29gnu: Add rnp.Justus Winter
* gnu/packages/openpgp.scm (rnp): New variable. * gnu/packages/patches/rnp-add-version.cmake.patch: New file. * gnu/packages/patches/rnp-disable-ruby-rnp-tests.patch: New file. * gnu/packages/patches/rnp-unbundle-googletest.patch: New file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-29gnu: libextractor: Update to 1.10.Michael Rohleder
* gnu/packages/gnunet.scm (libextractor): Update to 1.10. [arguments]: Add 'fix-exiv2-tests' phase. [inputs]: Add GIFLIB, remove TIDY-HTML. * gnu/packages/patches/libextractor-exiv2.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-28gnu: icecat: Update to 68.11.0-guix0-preview1 [security-fixes].Mark H Weaver
Includes fixes for CVE-2020-6463, CVE-2020-6514, CVE-2020-15652, and CVE-2020-15659. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2020-07-28gnu: lib2geom: Fix more tests.Maxim Cournoyer
There were still two tests failing on aarch64-linux: 1. rotated-rect-test, 2. ellipse-test. The first one was removed along with the RotatedRect class in latest upstream, while the second one is yet numerical accuracy related. It gets fixed by updating the already existing 'lib2geom-fix-tests' patch. * gnu/packages/graphics.scm (lib2geom): Bump revision to "2", and update commit hash to the latest one available. * gnu/packages/patches/lib2geom-fix-tests.patch: Update patch.
2020-07-27gnu: plotutils: Fix build on non-x86_64 architectures.Maxim Cournoyer
* gnu/packages/patches/plotutils-spline-test.patch: Add patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/plotutils.scm (plotutils)[patches]: Apply it.
2020-07-27gnu: python-jedi: Update to 0.17.2.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-jedi): Update to 0.17.2. [source, arguments]: Remove upstreamed patching. * gnu/packages/patches/python-jedi-sort-project-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-07-26gnu: glibc: Remove old versions.Marius Bakke
* gnu/packages/patches/glibc-CVE-2015-5180.patch, gnu/packages/patches/glibc-CVE-2015-7547.patch, gnu/packages/patches/glibc-CVE-2016-3075.patch, gnu/packages/patches/glibc-CVE-2016-3706.patch, gnu/packages/patches/glibc-CVE-2016-4429.patch, gnu/packages/patches/glibc-CVE-2017-1000366-pt1.patch, gnu/packages/patches/glibc-CVE-2017-1000366-pt2.patch, gnu/packages/patches/glibc-CVE-2017-1000366-pt3.patch, gnu/packages/patches/glibc-o-largefile.patch, gnu/packages/patches/glibc-vectorized-strcspn-guards.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/base.scm (glibc-2.26, glibc-2.25, glibc-2.24, glibc-2.23, glibc-2.22): Remove variables.
2020-07-24gnu: luminance-hdr: Update to 2.6.0.Marius Bakke
* gnu/packages/patches/luminance-hdr-qt-printer.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image-viewers.scm (luminance-hdr): Update to 2.6.0. [inputs]: Add QTSVG and EIGEN. [arguments]: Add #:tests? #f.
2020-07-23gnu: Fix Krita.Leo Famulari
Fixes <https://bugs.gnu.org/42476>. Reported by linka on #guix. * gnu/packages/patches/qtbase-fix-krita-deadlock.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/qt.scm (qtbase-for-krita): New variable. * gnu/packages/kde.scm (krita)[inputs]: Replace qtbase with qtbase-for-krita.
2020-07-23Revert "gnu: Fix Krita."Leo Famulari
This reverts commit 5f63905096e456097fca206f56ce9257f72faf64. This commit caused `guix pull` to crash like this: ------ Backtrace: In ice-9/boot-9.scm: 222:29 19 (map1 _) 222:29 18 (map1 _) 222:29 17 (map1 _) 222:29 16 (map1 _) 222:17 15 (map1 (((gnu packages kde)) ((gnu packages libevent)) ((gnu packages libidn)) ((gnu packages #)) ((?)) ?)) 3297:17 14 (resolve-interface (gnu packages kde) #:select _ #:hide _ #:prefix _ #:renamer _ #:version _) In ice-9/threads.scm: 390:8 13 (_ _) In ice-9/boot-9.scm: 3223:13 12 (_) In ice-9/threads.scm: 390:8 11 (_ _) In ice-9/boot-9.scm: 3507:20 10 (_) 2806:4 9 (save-module-excursion _) 3527:26 8 (_) In unknown file: 7 (primitive-load-path "gnu/packages/kde" #<procedure 7f68d6fe5da0 at ice-9/boot-9.scm:3514:37 ()>) In ice-9/eval.scm: 626:19 6 (_ #<directory (gnu packages kde) 7f68d6175b40>) 293:34 5 (_ #<directory (gnu packages kde) 7f68d6175b40>) 173:47 4 (_ #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval.sc?>)) 159:9 3 (_ #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval.sc?>)) 191:35 2 (_ #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval.sc?>)) 223:20 1 (proc #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval?>)) In unknown file: 0 (%resolve-variable (7 . qtbase) #<directory (gnu packages kde) 7f68d6175b40>) ERROR: In procedure %resolve-variable: error: qtbase: unbound variable ------
2020-07-23gnu: Fix Krita.Leo Famulari
Fixes <https://bugs.gnu.org/42476>. Reported by linka on #guix. * gnu/packages/patches/qtbase-fix-krita-deadlock.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde.scm (qtbase-for-krita): New variable. (krita)[inputs]: Replace qtbase with qtbase-for-krita.
2020-07-23gnu: linux-libre@4.14: Update to 4.14.189.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.189. (linux-libre-4.14-pristine-source): Update hash. (linux-libre-4.14-source): Remove %linux-libre-fix-atheros-9271-patch. (deblob-scripts-4.14): Update to 4.14.189. (%linux-libre-fix-atheros-9271-patch): Delete variable. * gnu/packages/patches/linux-libre-fix-atheros-9271.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-07-22arb: Update to 2.18.1.Andreas Enge
* gnu/packages/patches/arb-flint-2.6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/algebra.scm (arb): Update to 2.18.1. [source](patches): Remove.
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