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2021-10-09gnu: clang@11, clang@12: Do not refer to /lib on foreign distros....Partly fixes <https://issues.guix.gnu.org/51088>. * gnu/packages/patches/clang-11.0-libc-search-path.patch: Update. * gnu/packages/patches/clang-12.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/llvm.scm (clang-12): Use it. Ludovic Courtès
2021-10-09gnu: clang@10: Do not refer to /lib on foreign distros....Partly fixes <https://issues.guix.gnu.org/51088>. * gnu/packages/patches/clang-10.0-libc-search-path.patch: Update. Ludovic Courtès
2021-10-09gnu: clang@9: Do not refer to /lib on foreign distros....Partly fixes <https://issues.guix.gnu.org/51088>. * gnu/packages/patches/clang-9.0-libc-search-path.patch: Update. Ludovic Courtès
2021-10-09gnu: clang@7, clang@8: Do not refer to /lib on foreign distros....Partly fixes <https://issues.guix.gnu.org/51088>. * gnu/packages/patches/clang-7.0-libc-search-path.patch: Update. * gnu/packages/patches/clang-8.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/llvm.scm (clang-8): Use it. Ludovic Courtès
2021-10-08gnu: pigx-scrnaseq: Remove dependency on pandoc-citeproc....* gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-scrnaseq)[source]: Use it. [native-inputs]: Add automake/autoconf. Lars-Dominik Braun
2021-10-08gnu: pigx-rnaseq: Remove dependency on pandoc-citeproc....* gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-rnaseq)[source]: Use it. [native-inputs]: Add automake/autoconf. Lars-Dominik Braun
2021-10-08gnu: pigx-chipseq: Remove dependency on pandoc-citeproc....* gnu/packages/patches/pigx-chipseq-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-chipseq)[source]: Use it. [native-inputs]: Add automake/autoconf. Lars-Dominik Braun
2021-10-08gnu: pigx-sars-cov2-ww: Remove dependency on pandoc-citeproc....* gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww)[source]: Use it. [native-inputs]: Add automake/autoconf. Lars-Dominik Braun
2021-10-08gnu: pigx-bsseq: Remove dependency on pandoc-citeproc....* gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-bsseq)[source]: Use it. [native-inputs]: Add automake/autoconf. Lars-Dominik Braun
2021-10-08gnu: ngless: Fix build....Apply upstream patch to restore compatibility with current Stackage. * gnu/packages/patches/ngless-unliftio.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/bioinformatics.scm (ngless): Use it. Lars-Dominik Braun
2021-10-08gnu: idris: Fix build....Backport some commits from upstream. * gnu/packages/patches/idris-build-with-haskeline-0.8.patch: * gnu/packages/patches/idris-build-with-megaparsec-9.patch: New patches * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/idris.scm (idris): Use them. Signed-off-by: Lars-Dominik Braun <lars@6xq.net> Xinglu Chen
2021-10-08gnu: hedgewars: Fix build....* gnu/packages/patches/hedgewars-network-bsd.patch: Import upstream patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/games.scm (hedgewars): Use it. Lars-Dominik Braun
2021-10-08gnu: cabal-install: Build with GHC 8.10....* gnu/packages/patches/cabal-install-base16-bytestring1.0.patch: New patch. * gnu/packages/patches/cabal-install-ghc8.10.patch: Ditto. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/haskell-apps.scm (cabal-install) [source]: Use them. Lars-Dominik Braun
2021-10-08gnu: Update Haskell ecosystem....Bump packages’ versions to the lastest Stackage or Hackage release. Since packages are interdependent, do so in a single commit. 525 packages have been updated. These packages have been removed, because they fail to build, have no newer version available and no dependencies: corrode ghc-easytest ghc-edisonapi ghc-edisoncore ghc-pandoc-types ghc-regex-tdfa-text These have been removed, because they are no longer required: ghc-happy-1.19.9 ghc-prettyprinter-1.6 ghc-protolude-0.3 ghc-pandoc-citeproc and pandoc-citeproc have been removed, because pandoc does not use them any more. Co-authored-by: Xinglu Chen <public@yoctocell.xyz> Lars-Dominik Braun
2021-10-08gnu: ocaml-cairo2: Update to 0.6.2....* gnu/packages/ocaml.scm (ocaml-cairo2): Update to 0.6.2. * gnu/packages/patches/ocaml-cairo2-caml_ba_array-fix.patch: Remove file. * gnu/local.scm (dist_patch_DATA): Remove it. Julien Lepiller
2021-10-08gnu: ceph: Fix breaking change in snappy....* gnu/packages/storage.scm (ceph)[source]: Add patch. * gnu/packages/patches/ceph-fix-snappy-breaking-change.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Marius Bakke <marius@gnu.org> Greg Hogan
2021-10-07gnu: llvm-3.6: Fix build....* gnu/packages/patches/llvm-3.6-fix-build-with-gcc-10.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/llvm.scm (llvm-3.6)[source]: Use it. Guillaume Le Vaillant
2021-10-06gnu: Add jsoncpp-with-pkg-version....* gnu/packages/patches/jsoncpp-pkg-config-version: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/serialization.scm (jsoncpp-with-pkg-version): New variable. Mathieu Othacehe
2021-10-05gnu: gdb: Fix cross-compilation for Hurd....* gnu/packages/patches/gdb-hurd.patch: Update it. * gnu/packages/gdb.scm (gdb)[source]: Add it. Mathieu Othacehe
2021-10-05gnu: php: Patch failing test case....Fixes a failing test case in PHP (Zend/tests/bug74093.phpt). See <https://github.com/php/php-src/pull/7555/files> for upstream status. * gnu/packages/php.scm (php)[source]: Add patch. * gnu/packages/patches/php-bug-74093-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Ryan Sundberg via Guix-patches via
2021-10-05gnu: p11-kit: Fix Hurd build....* gnu/packages/patches/p11-kit-hurd.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tls.scm (p11-kit)[native-inputs]: Add autoconf, automake, gettext and libtool when targeting Hurd. [inputs]: Add libbsd and hurd-patch when targeting hurd. [arguments]: Add 'apply-hurd-patch and 'bootstrap phases when targeting Hurd. Mathieu Othacehe
2021-10-04gnu: diffoscope: Update to 186....* gnu/packages/diffoscope.scm (diffoscope): Update to 186. [source]: Add patch. [arguments]: Add a new 'fix-failing-tests phase. Don't explicitly return #t from phases. * gnu/packages/patches/diffoscope-fix-test_item3_deflate_llvm_bitcode.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2021-10-04gnu: libcacard: Update to 2.8.1....* gnu/packages/spice.scm (libcacard): Update to 2.8.1. [source]: Remove patch. * gnu/packages/patches/libcacard-unknown-variable.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-10-03gnu: range-v3: Fix build....* gnu/packages/patches/range-v3-build-with-gcc10.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/cpp.scm (range-v3)[source]: Use patch. [native-inputs]: Add gcc@9 for a succesful build. Jonathan Brielmaier
2021-10-03gnu: hexchat: Update to 2.16.0....* gnu/packages/messaging.scm (hexchat): Update to 2.16.0. [source]: Remove patch. [inputs]: Remove libnotify and libproxy. Upgrade python-2 to python@3. Add python-cffi and bash-minimal. [arguments]: Don't explicitly return #t from phases. Add a new 'wrap-program phase. Tobias Geerinckx-Rice
2021-10-03gnu: gdm: Fix the wayland session wrapper patch....Update the following patch that no longer applies since the 40.1 version. * gnu/packages/patches/gdm-wayland-session-wrapper-from-env.patch: Update it. Mathieu Othacehe
2021-10-03gnu: ccache: Update to 4.4.2....* gnu/packages/ccache.scm (ccache): Update to 4.4.2. [source]: Remove patch. [arguments]: Substitute nonexistent compgen. * gnu/packages/patches/ccache-fix-basedir-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-10-02services: gdm: Add Wayland support....* gnu/packages/patches/gdm-wayland-session-wrapper-from-env.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gdm): Use it. * gnu/services/xorg.scm (<gdm-configuration>)[wayland-session]: New field. (gdm-wayland-session-wrapper): New procedure. (gdm-configuration-file): Point to this new procedure. * doc/guix.texi (X Window): Update it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Josselin Poiret
2021-10-02gnu: Add Wayland support for GDM....Add the optional flag `wayland?` in `gdm-configuration` to launch GDM with Wayland, enabling the use of Wayland sessions with GDM. * gnu/packages/patches/gdm-remove-hardcoded-xwayland-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gdm): Use it. * gnu/services/xorg.scm (<gdm-configuration>)[wayland?]: New field. (gdm-configuration): Honor it. (gdm-shepherd-service): Add the XCURSOR_PATH environment variable. * doc/guix.texi (X Window): Document it Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Josselin Poiret
2021-10-02gnu: gnome-shell: Update to 40.5....Remove the theme patch that does not apply anymore because the CSS files have been revamped. * gnu/packages/patches/gnome-shell-CVE-2020-17489.patch: Remove it. * gnu/packages/patches/gnome-shell-theme: Remove it. * gnu/packages/patches/gnome-shell-disable-test.patch: Update it. * gnu/local.mk (DIST_PATCH_DATA): Update it. * gnu/packages/gnome.scm (gnome-shell): Update to 40.5. [source]: Fix the URI. Update the patches. Remote the snippet. [arguments]: Remove trailing #t. <#:phases>: Add a 'skip-gtk-update-icon-cache phase. Remove the 'convert-logo-to-png phase. Remove the inkscape disallowed reference. [native-inputs]: Remove inkscape. Add hicolor-icon-theme. [inputs]: Add gtk and graphene. [properties]: Remove it. Mathieu Othacehe
2021-10-02gnu: gnome-online-miners: Fix build....* gnu/packages/patches/gnome-online-miners-tracker-3.patch: New file. * gnu/local.mk (DIST_PATCH_DATA): Add it. * gnu/packages/gnome.scm (gnome-online-miners)[source]: Use it. [arguments]: Add a 'fix-configure and a 'autoreconf phase. [inputs]: Add autoconf, automake and libtool. Mathieu Othacehe
2021-10-02gnu: gdm: Update to 40.1....* gnu/packages/patches/gdm-elogind-support.patch: New file. * gnu/packages/patches/gdm-default-session.patch: Update it. * gnu/local.mk (DIST_PATCH_DATA): Add the new patch. * gnu/packages/gnome.scm (gdm): Update to 40.1. [source]: Add the gdm-elogind-support support. [build-system]: Switch to meson-build-system. [arguments]<#:glib-or-gtk>: Set to true. <#:configure-flags>: Convert to meson options. Add logind-provider, systemsystemunitdir and systemduserunitdir options. <#:phases>{pre-configure}: Remove the libelogind intoduction that is now handled by the patch. Remove trailing #t. [inputs]: Add eudev. Mathieu Othacehe
2021-10-02gnu: gvfs: Update to 1.48.1....* gnu/packages/patches/gvfs-add-support-for-libplist-2.2.patch: Remove it. * gnu/local.mk (DIST_PATCH_DATA): Update it. * gnu/packages/gnome.scm (gvfs)[source]: Remove the patch. [inputs]: Switch to fuse@3 and add gsettings-desktop-schemas. [properties]: Remove it. [description]: Wrap it. Mathieu Othacehe
2021-10-02gnu: gnome-todo: Update to 40.1....* gnu/packages/patches/gnome-todo-delete-esource-duplicate.patch: Remove it. * gnu/local.mk (DIST_PATCH_DATA): Update it. * gnu/packages/gnome.scm (gnome-todo): Update to 40.1. [source]: Fix the URL. [arguments]: Remove the 'wrap-gnome-todo phase and add a 'skip-gtk-update-icon-cache phase. Disable the tests. [native-inputs]: Switch from gtk+ to gtk. [inputs]: Add gtk, libadwaita and libportal. Mathieu Othacehe
2021-10-02gnu: Add gtk....* gnu/packages/gtk.scm (gtk): New variable. * gnu/packages/patches/gtk4-respect-GUIX_GTK4_PATH.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Raghav Gururajan
2021-10-01gnu: gdb-9.2: Fix build with GCC 10 on powerpc64le-linux....* gnu/packages/patches/gdb-9.2-sim-ppc-fno-common.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gdb.scm (gdb-9.2)[source]: Use it. Thiago Jung Bauermann
2021-09-29gnu: guile-email: Fix build....* gnu/packages/patches/guile-email-fix-tests.patch: New file. * gnu/local.mk (DIST_PATCH_DATA): Add it. * gnu/packages/guile-xyz.scm (guile-email): Use it. Mathieu Othacehe
2021-09-29gnu: mariadb: Update to 10.5.12....* gnu/packages/databases.scm (mariadb): Update to 10.5.12. [source]: Remove patches. [arguments]: In custom 'adjust-tests phase, update list of skipped tests. Also remove tests already listed in mysql-test/unstable-tests. * gnu/packages/patches/mariadb-CVE-2021-27928.patch, gnu/packages/patches/mariadb-cmake-compat.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them. Efraim Flashner
2021-09-28gnu: syslinux: Fix build....* gnu/packages/patches/syslinux-gcc10.patch: New file. * gnu/packages/patches/syslinux-strip-gnu-property.patch: New file. * gnu/local.mk (DIST_PATCH_DATA): Add them. * gnu/packages/bootloaders.scm (syslinux)[source]: Use them. [arguments]: Only strip debug symbols. Mathieu Othacehe
2021-09-28gnu: sbcl-burgled-batteries3: Fix compiling with sbcl >= 2.1.6....* gnu/packages/patches/sbcl-burgled-batteries3-fix-signals.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/lisp-xyz.scm (sbcl-burgled-batteries3)[source]: Use it. Guillaume Le Vaillant
2021-09-28gnu: sbcl-png: Fix compiling with sbcl >= 2.1.6....* gnu/packages/patches/sbcl-png-fix-sbcl-compatibility.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/lisp-xyz.scm (sbcl-png)[source]: Use it. Guillaume Le Vaillant
2021-09-28gnu: ccache: Update to 4.4.1....* gnu/packages/ccache.scm (ccache): Update to 4.4.1. [source]: Add patch. [arguments]: Remove explicit #t return values from phases. * gnu/packages/patches/ccache-fix-basedir-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2021-09-25gnu: Add xgboost....* gnu/packages/machine-learning.scm (xgboost): New variable. * gnu/packages/patches/xgboost-use-system-dmlc-core.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego
2021-09-25Update copyright assignments for Liliana Marie Prikler....* doc/guix.texi: Update copyright name for Liliana Marie Prikler. * gnu/packages/build-tools.scm: Update copyright name and email for Liliana Marie Prikler. * gnu/packages/convmv.scm: Likewise. * gnu/packages/emacs-xyz.scm: Likewise. * gnu/packages/emacs.scm: Likewise. * gnu/packages/esolangs.scm: Likewise. * gnu/packages/game-development.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gnome-xyz.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/gstreamer.scm: Likewise. * gnu/packages/guile-xyz.scm: Likewise. * gnu/packages/minetest.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/patches/minetest-add-MINETEST_MOD_PATH.patch: Likewise. * gnu/packages/patches/ppsspp-disable-upgrade-and-gold.patch: Likewise. * gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Likewise. * gnu/packages/python-xyz.scm: Likewise. * gnu/packages/unicode.scm: Likewise. * gnu/packages/xorg.scm: Likewise. * gnu/services/sound.scm: Likewise. * guix/build-system/renpy.scm: Likewise. * guix/build/emacs-utils.scm: Likewise. * guix/build/renpy-build-system.scm: Likewise. Liliana Marie Prikler
2021-09-24gnu: python-pytorch: Unbundle NNPACK....* gnu/packages/machine-learning.scm (python-pytorch)[source]: Delete "third_party/NNPACK". [inputs]: Add NNPACK. [propagated-inputs]: Remove PYTHON-PEACHPY. * gnu/packages/patches/python-pytorch-system-libraries.patch: Remove hunk modifying NNPACK; add hunk to allow the use of our own NNPACK. Ludovic Courtès
2021-09-24gnu: Add NNPACK....* gnu/packages/machine-learning.scm (nnpack): New variable. * gnu/packages/patches/nnpack-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2021-09-23gnu: ungoogled-chromium: Update to 93.0.4577.82-0.3f62dbc....* gnu/packages/patches/ungoogled-chromium-ffmpeg-compat.patch, gnu/packages/patches/ungoogled-chromium-system-nspr.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for version 93. (%chromium-version): Set to 93.0.4577.82. (%ungoogled-revision): Set to 93.0.4577.82-1-2-g3f62dbc. (%debian-patches): Remove 'system/nspr.patch'. (%ungoogled-origin): Update source hash. (%guix-patches): Add 'ungoogled-chromium-ffmpeg-compat.patch' and 'ungoogled-chromium-system-nspr.patch'. (ungoogled-chromium-snippet): Remove PYTHON-2 usage. Don't unbundle 'snappy'. (libvpx/chromium): Remove variable. (ungoogled-chromium)[source]: Update hash. [arguments]: Add "is_cfi=false", "use_thin_lto=false", and "blink_enable_generated_code_formatting=false". [native-inputs]: Change CLANG-11 to CLANG-12. Change NODE to NODE-LTS. Add PYTHON-BEAUTIFULSOUP4 and PYTHON-HTML5LIB. Remove PYTHON-2. [inputs]: Change LIBVPX/CHROMIUM to LIBVPX. Marius Bakke
2021-09-23gnu: LLVM, Clang: Update to 12.0.1....* gnu/packages/patches/clang-12-tools-extra-directory.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/llvm.scm (llvm-12, clang-runtime-12): Update to 12.0.1. (clang-12): Likewise. Remove obsolete patch. Marius Bakke
2021-09-21gnu: ntfs-3g: Update to 2021.8.22 [security fixes]....The upstream security advisory is named NTFS3G-SA-2021-0001. Fixes CVE-2021-33285, CVE-2021-35269, CVE-2021-35268, CVE-2021-33289, CVE-2021-33286, CVE-2021-35266, CVE-2021-33287, CVE-2021-35267, CVE-2021-39251, CVE-2021-39252, CVE-2021-39253, CVE-2021-39254, CVE-2021-39255, CVE-2021-39256, CVE-2021-39257, CVE-2021-39258, CVE-2021-39259, CVE-2021-39260, CVE-2021-39261, CVE-2021-39262, CVE-2021-39263. For more information: https://seclists.org/oss-sec/2021/q3/139 * gnu/packages/linux.scm (ntfs-3g): Update to 2021.8.22. [source]: Remove obsolete patch. * gnu/packages/patches/ntfs-3g-CVE-2019-9755.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2021-09-18gnu: mpg321: Fix compiling with gcc 10....* gnu/packages/patches/mpg321-gcc-10.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mp3.scm (mpg321)[source]: Use it. Guillaume Le Vaillant
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