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2021-01-19gnu: freebayes: Don't include vcflib sources....* gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Remove vcflib-source, intervaltree-source. Move vcflib ... [inputs]: ... to here. [arguments]: Adjust 'patch-source and 'unpack-submodule-sources for changes in vendored code. * gnu/packages/patches/freebayes-devendor-deps.patch: Update patch. Efraim Flashner
2021-01-18gnu: mesa: Skip another test....* gnu/packages/patches/mesa-skip-disk-cache-test.patch: Rename to ... * gnu/packages/patches/mesa-skip-tests.patch: ... new file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/gl.scm (mesa)[source]: Adjust accordingly. Leo Famulari
2021-01-17gnu: freebayes: Update to 1.3.3....* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.3. [source]: Add patch. Add snippet to remove vendored library. [build-system]: Switch to meson-build-system. [inputs]: Remove bamtools. Add fastahack, smithwaterman, tabixpp. [native-inputs]: Remove procps, python-2, tabixpp source, smithwaterman source, multichoose source, fsom source, filevercmp source, fastahack source, bash-tap source. Add bash-tap, grep, pkg-config, simde, vcflib. [arguments]: Drop make-flags. Don't delete 'configure phase. Delete custom 'fix-tests, 'build-tabixpp-and-vcflib, 'fix-makefiles, 'install phases. Adjust 'unpack-submodule-sources phase to changed native-inputs. Add new 'patch-source phase. Efraim Flashner
2021-01-14gnu: vcflib: Update to 1.0.2....* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.2. [source]: Download using git-fetch. Remove patch. Update snippet to use packaged libraries. [build-system]: Switch to cmake-build-system. [inputs]: Add bzip2. [native-inputs]: Add package-source of fsom. [arguments]: Delete custom 'set-flags, 'install phases. Don't delete 'configure phase. Adjust 'unpack-submodule-sources phase. * gnu/packages/patches/vcflib-use-shared-libraries.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2021-01-14gnu: Add ipxe....* gnu/packages/bootloaders.scm (ipxe): New variable. * gnu/packages/patches/ipxe-reproducible-geniso.patch: New file … * gnu/local.mk (dist_patch_DATA): … add it. Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr> Co-authored-by: Brice Waegeneire <brice@waegenei.re> Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Vincent Legoll
2021-01-11gnu: podofo: Update to 0.9.7....* gnu/packages/pdf.scm (podofo): Update to 0.9.7. [source]: Remove patch. * gnu/packages/patches/podofo-cmake-3.12.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-01-11gnu: guile: Fix tests on emulated architectures....The stack overflow test limits the virtual memory size using setrlimit with RLIMIT_AS argument. This is ignored when using QEMU transparent emulation, causing the test to crash. * gnu/packages/patches/guile-2.2-skip-so-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/guile.scm (guile-3.0-latest): Add it. Mathieu Othacehe
2021-01-10gnu: tipp10: Build with qt-5....* gnu/packages/education.scm (tipp10)[source]: Add new patches. [inputs]: Remove qt-4, sqlite. Add qtbase, qtmultimedia. * gnu/packages/patches/tipp10-disable-downloader.patch, gnu/packages/patches/tipp10-qt5.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them. Efraim Flashner
2021-01-10Merge branch 'master' into stagingEfraim Flashner
2021-01-10gnu: pulseview: Fix qt-5.15 compatibility....* gnu/packages/electronics.scm (pulseview)[source]: Add patch. * gnu/packages/patches/pulseview-qt515-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2021-01-09gnu: emacs-scheme-complete: Update to 0.9.9....* gnu/packages/emacs-xyz.scm (emacs-scheme-complete): Update to 0.9.9. * gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: Remove file. * gnu/local.mk: Update file. Nicolas Goaziou
2021-01-08gnu: icecat: Update to 78.6.1-guix0-preview1 [fixes CVE-2020-16044]....* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version. Mark H Weaver
2021-01-06gnu: gpsbabel: Enable tests....* gnu/packages/patches/gps.scm (gpsbabel)[source]: Add patch. [arguments]: Enable tests. * gnu/packages/patches/gpsbabel-fix-i686-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2021-01-06gnu: gpsbabel: Update to 1.7.0....* gnu/packages/gps.scm (gpsbabel): Update to 1.7.0. [source]: Use git-fetch, remove obsolete patches. [inputs]: Add libusb. * gnu/packages/patches/gpsbabel-minizip.patch: Remove file. * gnu/packages/patches/gpsbabel-qstring.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove entries. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Björn Höfling
2021-01-05gnu: smalltalk: Fix integer multiplication overflow....* gnu/local.mk (dist_patch_DATA): Add Smalltalk patch. * gnu/packages/patches/smalltalk-multiplication-overflow.patch: Patch from upstream commit 72ada189aba0283c551ead16635c1983968080b8. * gnu/packages/smalltalk.scm (smalltalk): Use patch and link with gmp and lightning libraries instead of the included source. Miguel Ángel Arruga Vivas
2021-01-03gnu: pidgin: Enable MultiMedia and A/V support....* gnu/packages/messaging.scm (pidgin) [patches]<search-patches> [pidgin-vv-gst.patch]: New patch. [arguments]<#:configure-flags>[--diable-vv]: Remove flag. [--disable-gstreamer]: Remove flag. [CFLAGS]: New flag. [inputs]: Add farstream and gstreamer. Move gtk+-2 to ... [propagated-inputs]: ... here. * gnu/packages/patches/pidgin-vv-gst.patch: New file. * gnu/local.mk (dist_patch_DATA): Add entry. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Raghav Gururajan
2021-01-03gnu: pidgin: Upgrade to 2.14.1....* gnu/packages/messaging.scm (pidgin) [version]: Modify. [source]<origin>[sha256]: Modify base32. [patches]<search-patches>[pidgin-libnm.patch]: Remove obsolete patch. * gnu/packages/patches/pidgin-libnm.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove entry. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Raghav Gururajan
2021-01-02gnu: Add Rust 1.48....* gnu/packages/rust.scm (rust-1.48): New variable. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> Matthew Kraai
2020-12-29Merge branch 'ungrafting' into stagingMarius Bakke
2020-12-29Merge branch 'master' into ungraftingMarius Bakke
2020-12-29gnu: Add shakespeare-spl....* gnu/packages/patches/shakespeare-spl-fix-grammar.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it here. * gnu/packages/esolangs.scm (shakespeare-spl): New variable. Leo Prikler
2020-12-28gnu: dbxfs: Update to 1.0.48....* gnu/packages/file-systems.scm (dbxfs): Update to 1.0.48. * gnu/packages/patches/dbxfs-remove-sentry-sdk.patch: Update for newer version of dbxfs. Efraim Flashner
2020-12-27gnu: audacity: Update to 2.4.2....* gnu/packages/audio.scm (audacity): Update to 2.4.2. [source]: Add patch. Don't delete portaudio-v19, since only the bundled copy can be built. [build-system]: Switch to cmake-build-system. [inputs]: Remove portaudio. [arguments]: Adjust configure flags for CMake. Remove 'fix-sbsms-check phase. Add 'comment-out-revision-ident phase. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/patches/audacity-add-include.patch: New file. Kei Kebreau
2020-12-23gnu: VLC: Fix build with Qt 5.15....* gnu/packages/patches/vlc-qt-5.15.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/video.scm (vlc)[source]: Use it. Leo Famulari
2020-12-21Merge branch 'ungrafting' into stagingMarius Bakke
2020-12-21Merge branch 'master' into ungraftingMarius Bakke
2020-12-21gnu: sbc: Fix build on non-x86 architectures....* gnu/packages/patches/sbc-fix-build-non-x86.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/linux.scm (sbc)[source](patches): New field. Marius Bakke
2020-12-21gnu: sdcc: Update to 4.0.0....* gnu/packages/embedded.scm (sdcc): Update to 4.0.0. [native-inputs]: Add zlib. [description]: Update to match new version. * gnu/packages/patches/sdcc-disable-non-free-code.patch: Update to match new version. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Simon South
2020-12-20gnu: libffi: Add unreleased patch to fix float128 on powerpc64le....Fixes <https://bugs.gnu.org/45252>. * gnu/packages/patches/libffi-float128-powerpc64le.patch: Import patch file from <https://github.com/libffi/libffi/pull/561.patch>. * gnu/packages/libffi.scm (libffi)[arguments]: Apply patch conditionally for powerpc64le-* systems in a phase. [inputs]: Add patch as input conditionally for powerpc64le-* systems. * gnu/local.mk (dist_patch_DATA): Add patch file to build system. Signed-off-by: Chris Marusich <cmmarusich@gmail.com> John Doe
2020-12-20gnu: bear: Update to 3.0.4....* gnu/local.mk (bear-disable-preinstall-tests.patch): Add patch. * gnu/packages/build-tools.scm (bear): Reference patch, and update. Brett Gilio
2020-12-19gnu: serf: Build with Python 3....* gnu/packages/patches/serf-python3.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/web.scm (serf)[source](patches): New field. [arguments]: Remove #:scons. Marius Bakke
2020-12-17gnu: sudo: Update to 1.9.4p1....* gnu/packages/admin.scm (sudo): Update to 1.9.4p1. [source]: Remove patch. * gnu/packages/patches/sudo-fix-build-without-sendmail.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2020-12-17gnu: Add aws-c-event-stream....* gnu/packages/c.scm (aws-c-event-stream): New variable. * gnu/packages/patches/aws-c-event-stream-cmake-prefix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2020-12-17gnu: Add aws-checksums....* gnu/packages/c.scm (aws-checksums): New variable. * gnu/packages/patches/aws-checksums-cmake-prefix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2020-12-15gnu: icecat: Update to 78.6.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2020-16042, CVE-2020-26971, CVE-2020-26973, CVE-2020-26974, CVE-2020-26978, CVE-2020-35111, CVE-2020-35112, and CVE-2020-35113. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version. Mark H Weaver
2020-12-15gnu: Add rust-ndarray-0.12....* gnu/packages/crates-io.scm (rust-ndarray-0.12): New variable. * gnu/packages/patches/rust-ndarray-remove-blas-src-dep.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Efraim Flashner
2020-12-14gnu: Add python-3.9....* gnu/packages/python.scm (python-3.9): New variable. * gnu/packages/patches/python-3.9-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Tanguy Le Carrour
2020-12-14gnu: alsa-modular-synth: Update to 2.2.0....* gnu/packages/audio.scm (alsa-modular-synth): Update to 2.2.0. [arguments]: Remove them all. [source]: Remove patch. [native-inputs]: Remove gcc@5. * gnu/packages/patches/alsa-modular-synth-fix-vocoder.patch: Remove it. * gnu/local.mk (dist_patch_DATA): Remove patch. Ricardo Wurmus
2020-12-13gnu: purescript: Update patch for Purescript 0.13.8....* gnu/packages/patches/purescript-relax-dependencies.patch: Update patch for new version of Purescript. Signed-off-by: Leo Famulari <leo@famulari.name> BonfaceKilz
2020-12-13gnu: Qt: Update to 5.15.2....* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras, qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors, qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel, qtwebglplugin, qtwebview, qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcharts, qtdatavis3d, qtnetworkauth, qtremoteobjects, qtspeech, qtwebengine): Update to 5.15.2. (qtbase)[source](patches): Remove obsolete patch. (qtwayland)[source](modules, snippet): Remove. [inputs]: Add VULKAN-HEADERS. (qtwebengine)[source](snippet): Adjust preserved files. [arguments]: Remove two obsolete phases. * gnu/packages/patches/qtbase-fix-krita-deadlock.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2020-12-13Merge branch 'master' into ungraftingMarius Bakke
2020-12-12gnu: renpy: Use system fribidi and drop generated sources....* gnu/packages/patches/renpy-use-system-fribidi.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it here. * gnu/packages/game-development.scm (renpy)[source]<patches> Use it here. <modules>: Add (guix build utils). <snippet>: Drop generated sources and fribidi sources. (arguments)[phases]: Add fix-include-paths. (inputs): Add fribidi. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Leo Prikler
2020-12-11gnu: knot-resolver: Update to 5.2.1....* gnu/packages/dns.scm (knot-resolver): Update to 5.2.1. [source]: Remove obsolete patch. * gnu/packages/patches/knot-resolver-fix-map-command-on-32-bit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Simon South
2020-12-11gnu: sbcl-geco: Update to 2.1.1....* gnu/packages/lisp-xyz.scm (sbcl-geco): Update to 2.1.1. [source]: Fetch from Github. [home-page]: Update to author's page. * gnu/packages/patches/sbcl-geco-fix-organism-class.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Guillaume Le Vaillant
2020-12-11gnu: busybox: Update to 1.32.0....* gnu/packages/busybox.scm (busybox): Update to 1.32.0. [source]: Remove patch. * gnu/packates/patches/busybox-1.31.1-fix-build-with-glibc-2.31.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2020-12-09gnu: pciutils: Fix compilation error on GNU/Hurd....* gnu/packages/patches/pciutils-hurd-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pciutils.scm (pciutils)[arguments]: Add 'apply-hurd-patch' phase when (hurd-target?) is true. [inputs]: Add "hurd-patch" entry when (hurd-target?) is true. Ludovic Courtès
2020-12-09gnu: libssh2: Fix CVE-2019-17498....* gnu/packages/patches/ssh.scm (libssh2)[source]: Add patch. * gnu/packages/patches/libssh2-CVE-2019-17498.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2020-12-08gnu: Python: Fix CVE-2020-26116....* gnu/packages/patches/python-CVE-2020-26116.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python.scm (python-3.8)[source](patches): Add it. Marius Bakke
2020-12-08gnu: ghostscript: Fix CVE-2020-15900....* gnu/packages/patches/ghostscript-CVE-2020-15900.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ghostscript.scm (ghostscript)[source](patches): Add it. Marius Bakke
2020-12-08gnu: ghostscript: Fix build with FreeType 2.10.4....This fixes a build failure from 79b31767d084a2feeb2edcb41ae863a0d534b847. * gnu/packages/patches/ghostscript-freetype-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ghostscript.scm (ghostscript)[source](patches): Add it. Marius Bakke
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