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2021-02-28gnu: qemu: Fix CVE-2021-20203.Léo Le Bouter
* gnu/packages/patches/qemu-CVE-2021-20203.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/virtualization.scm (qemu): Apply it.
2021-02-28gnu: retroarch: Update to 1.9.0.宋文武
* gnu/packages/emulators.scm (retroarch): Update to 1.9.0. [source]: Remove 'retroarch-disable-online-updater.patch' and snippet. Add 'retroarch-LIBRETRO_DIRECTORY.patch'. [native-search-paths]: New field. * gnu/packages/patches/retroarch-disable-online-updater.patch: Remove file. * gnu/packages/patches/retroarch-LIBRETRO_DIRECTORY: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-02-28gnu: wpa-supplicant, hostapd: Fix CVE-2021-27803.Léo Le Bouter
See <https://w1.fi/security/2021-1/wpa_supplicant-p2p-provision-discovery-processing-vulnerability.txt>. * gnu/packages/patches/wpa-supplicant-CVE-2021-27803.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/admin.scm (wpa-supplicant-minimal, hostapd): Apply it.
2021-02-25gnu: Python 3.9: Update to 3.9.2.Greg Hogan
* gnu/packages/python.scm (python-3.9): Update to 3.9.2. [source]: Remove obsolete patch. * gnu/packages/patches/python-3.9-CVE-2021-3177.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-24gnu: http-server: Fix build on i686-linux.Mathieu Othacehe
* gnu/packages/patches/http-parser-fix-assertion-on-armhf.patch: Remove it. * gnu/local.mk (dist_patch_DATA): Update it. * gnu/packages/web.scm (http-parser)[source]: Remove a test assertion failing on i686-linux. [arguments]: Remove the "assertion.patch" that is merged upstream. [native-inputs]: Ditto. [synopsis]: Wrap it.
2021-02-24gnu: http-parser: Update to 2.9.4-1.ec8b5ee [fixes CVE-2020-8287].Jelle Licht
Fixes CVE-2020-8287. * gnu/packages/web.scm (http-parser): Update to 2.9.4-1.ec8b5ee. [source]: Add patch to mitigate CVE. * gnu/packages/patches/patches/http-parser-CVE-2020-8287.patch: New file. * gnu/local.mk [dist_patch_DATA]: New patch.
2021-02-23gnu: Python: Fix CVE-2021-3177.Leo Famulari
* gnu/packages/patches/python-3.8-CVE-2021-3177.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-3.8)[replacement]: New field. (python-3.8/fixed): New variable.
2021-02-23gnu: ruby-rack: Update to 2.2.3.Efraim Flashner
* gnu/packages/ruby.scm (ruby-rack): Update to 2.2.3. [source]: Remove patch. Add snippet. [arguments]: Adjust custom 'fix-tests phase. Remove 'make-files-writable phase. [native-inputs]: Remove ruby-minitest-sprint, which. Add ruby-minitest-global-expectations. [propagated-inputs]: Remove ruby-concurrent. * gnu/packages/patches/ruby-rack-ignore-failing-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-02-23gnu: ruby-tzinfo-data: Update to 1.2021.1.Efraim Flashner
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2021.1. [source]: Remove patch. [arguments]: Add custom 'patch-source, 'pre-check phases. [native-inputs]: Add IANA timezone data files. * gnu/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-02-21gnu: exiv2-0.26: Remove variable.Nicolas Goaziou
* gnu/packages/image.scm (exiv2-0.26): Remove variable. * gnu/packages/patches/exiv2-CVE-2017-14859-14862-14864.patch: * gnu/packages/patches/exiv2-CVE-2017-14860.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Apply removal.
2021-02-21gnu: screen: Patch CVE-2021-26937.Efraim Flashner
* gnu/packages/screen.scm (screen)[source]: Add patch. * gnu/packages/patches/screen-CVE-2021-26937.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2021-02-20gnu: lrzip: Update to 0.640.Vincent Legoll
* gnu/packages/compression.scm (lrzip): Update to 0.640. [source]: Remove obsolete patch 'lrzip-CVE-2017-8842.patch'. [inputs]: Add lz4. * gnu/packages/patches/lrzip-CVE-2017-8842.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-19gnu: Python 3.9: Fix CVE-2021-3177.Leo Famulari
* gnu/packages/patches/python-3.9-CVE-2021-3177.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-3.9)[source]: Use it.
2021-02-17gnu: ruby-rubocop: Update to 1.10.0.Efraim Flashner
* gnu/packages/ruby.scm (ruby-rubocop): Update to 1.10.0. [source]: Remove patch. [arguments]: Remove custom 'remove-problematic-tests, 'disable-bundler, 'replace-git-ls-files phases. Add custom 'check phase. [native-inputs]: Add ruby-memory-profiler, ruby-rake, ruby-rubocop-minimal, ruby-rubocop-performance-minimal, ruby-rubocop-rspec-minimal, ruby-simplecov, ruby-stackprof. Replace ruby-webmock-2 with ruby-webmock. (ruby-rubocop-minimal, ruby-rubocop-performance-minimal, ruby-rubocop-rspec-minimal): New variables. * gnu/packages/patches/ruby-rubocop-break-dependency-cycle.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-02-12gnu: diffoscope: Update to use python-magic.Vagrant Cascadian
Fixes: https://salsa.debian.org/reproducible-builds/diffoscope/-/issues/238 * gnu/packages/patches/diffoscope-revert-to-magic-open.patch: Remove file. * gnu/local.mk [dist_patch_DATA]: Update. * gnu/packages/diffoscope.scm (diffoscope)[source]: Remove patch. [inputs]: Remove python-file.
2021-02-11gnu: diffoscope: Update to 166.Vagrant Cascadian
* gnu/packages/diffoscope.scm (diffoscope): Update to 166. [source]: Add patch to use magic.open compatibility interface. * gnu/packages/patches/diffoscope-revert-to-magic-open.patch: New file. * gnu/local.mk [dist_patch_DATA]: New patch.
2021-02-10Revert "gnu: inetutils: Update to 2.0."Tobias Geerinckx-Rice
This reverts commit 55050e54a987cd99b8477da1a4993e83adcca129, which rebuilds xdg-utils and hence a good part of the world (1838 packages). Reported by mroh in #guix.
2021-02-09gnu: inetutils: Update to 2.0.Ludovic Courtès
* gnu/packages/admin.scm (inetutils): Update to 2.0. [source](patches): Remove. * gnu/packages/patches/inetutils-hurd.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-02-09gnu: vorbis-tools: Update to 1.4.2.Vincent Legoll
* gnu/packages/xiph.scm (vorbis-tools): Update to 1.4.2. (source): Remove obsolete patches. * gnu/packages/patches/vorbis-tools-CVE-2014-9638+CVE-2014-9639.patch, gnu/packages/patches/vorbis-tools-CVE-2014-9640.patch, gnu/packages/patches/vorbis-tools-CVE-2015-6749.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-09gnu: qpdfview: Fix qt-5.15 compatibility.Timotej Lazar
* gnu/packages/pdf.scm (qpdfview)[source]: Add patch to include a missing header. * gnu/packages/patches/qpdfview-qt515-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-08gnu: emacs-undohist-el: Update to 0.2.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-undohist-el): Update to 0.2.1. [origin]: Remove unnecessary patch. * gnu/packages/patches/emacs-undohist-ignored.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Apply deletion.
2021-02-08gnu: hdf5: Update to 1.8.22.Eric Bavier
Fixes CVE-2018-14033, CVE-2018-11206, CVE-2018-13870, CVE-2018-13869, and CVE-2018-17435 * gnu/packages/maths.scm (hdf5-1.8): Update to 1.8.22. * gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch: Delete upstreamed patch. * gnu/local/mk (dist_patch_DATA): Remove it.
2021-02-08gnu: clementine: Update to 1.4.0rc1-450.Pierre Langlois
* gnu/packages/music.scm (clementine): Update to 1.4.0rc1-450. [source]: Adapt snippet to list bundled directories to keep rather than ones to delete. Unbundled gmock. Remove patches no longer needed. [arguments]: Set -DUSE_SYSTEM_TAGLIB=TRUE. [native-inputs]: Add googletest. [inputs]: Remove openssl. [license]: Remove gmock license. * gnu/packages/patches/clementine-fix-sqlite.patch: Remove. * gnu/packages/patches/clementine-remove-crypto++-dependency.patch: Remvoe * gnu/packages/patches/clementine-use-openssl.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-02-07gnu: python2-renpy: Update to 7.4.0.Leo Prikler
* gnu/packages/game-development.scm (python2-renpy): Update to 7.4.0. (inputs): Move python2-pygame... (propagated-inputs): ... to here. Add python2-future. (#:phases)[install]: Infer python version from input. * gnu/packages/patches/renpy-use-system-fribidi.patch: Update to renpy 7.4.0. python2-renpy: propagate python inputs
2021-02-07gnu: owncloud-client: Update to 2.7.5.3180.Julien Lepiller
* gnu/packages/sync.scm (owncloud-client): Update to 2.7.5.3180. [native-inputs]: Add cmake-extra-modules. [arguments]: Fix `delete-failing-tests' phase. [source]: Remove no longer needed snippet. * gnu/packages/patches/owncloud-disable-updatecheck.patch: Update patch.
2021-02-02gnu: Add python-mediafile.Ricardo Wurmus
* gnu/packages/music.scm (python-mediafile): New variable. * gnu/packages/patches/python-mediafile-wavpack.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-02-02gnu: obs: Use an environment variable for plugins location.Alexey Abramov
* gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/video.scm (obs): Use it. * gnu/packages/patches/obs-modules-location.patch: Patch it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-02-01Merge branch 'staging'Leo Famulari
2021-02-01gnu: vcflib: Fix generated pkg-config file.Efraim Flashner
* gnu/packages/bioinformatics.scm (vcflib)[arguments]: In custom generated pkg-config file, link with all needed libraries and fix linker library. * gnu/packages/patches/freebayes-devendor-deps.patch: Adjust accordingly.
2021-01-31gnu: Add c++-gsl.Raghav Gururajan
* gnu/packages/cpp.scm (c++-gsl): New variable. * gnu/packages/patches/c++-gsl-find-system-gtest.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-01-31gnu: gst-plugins-good: Fix a test failure on 32-bit systems.Leo Famulari
* gnu/packages/patches/gst-plugins-good-fix-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gstreamer.scm (gst-plugins-good)[source]: Use it.
2021-01-29gnu: Remove avogadro.Leo Famulari
This package fails to build and has been superseded by avogadro2. * gnu/packages/chemistry.scm (avogadro): Remove variable. * gnu/packages/patches/avogadro-boost148.patch, gnu/packages/patches/avogadro-eigen3-update.patch, gnu/packages/patches/avogadro-python-eigen-lib.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2021-01-27gnu: pinentry-tty: Update to 1.1.1.Tobias Geerinckx-Rice
* gnu/packages/gnupg.scm (pinentry-tty): Update to 1.1.1. (pinentry-efl)[source]: Remove patch. * gnu/packages/patches/pinentry-efl.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-01-27gnu: VLC: Remove obsolete patch.Leo Famulari
* gnu/packages/patches/vlc-qt-5.15.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/video.scm (vlc)[source]: Remove patch.
2021-01-26gnu: icecat: Update to 78.7.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2021-23953, CVE-2021-23954, CVE-2020-26976, CVE-2021-23960, and CVE-2021-23964. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2021-01-25gnu: Mutt: Update to 2.0.5.Leo Famulari
* gnu/packages/patches/mutt-CVE-2021-3181.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/mail.scm (mutt): Update to 2.0.5. [source]: Remove obsolete patch.
2021-01-25Merge branch 'master' into stagingLeo Famulari
2021-01-20gnu: Mutt: Fix CVE-2021-3181.Leo Famulari
* gnu/packages/patches/mutt-CVE-2021-3181.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mail.scm (mutt)[source]: Use it.
2021-01-20gnu: r-httpuv: Update to 1.5.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.5. [source]: Update patch name and remove unused modules. * gnu/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch: Rename this file... * gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: ...to this. * gnu/local.mk (dist_patch_DATA): Rename it.
2021-01-20gnu: idris: Update to 1.3.3.Eric Bavier
* gnu/packages/patches/idris-disable-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/idris.scm (idris): Update to 1.3.3. [source]: Use the patch. [native-inputs]: Add ghc-cheapskate. [arguments]: Adjust cheapskate version bounds. Make auxiliary test script executable.
2021-01-19gnu: freebayes: Don't include vcflib sources.Efraim Flashner
* gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Remove vcflib-source, intervaltree-source. Move vcflib ... [inputs]: ... to here. [arguments]: Adjust 'patch-source and 'unpack-submodule-sources for changes in vendored code. * gnu/packages/patches/freebayes-devendor-deps.patch: Update patch.
2021-01-18gnu: mesa: Skip another test.Leo Famulari
* gnu/packages/patches/mesa-skip-disk-cache-test.patch: Rename to ... * gnu/packages/patches/mesa-skip-tests.patch: ... new file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/gl.scm (mesa)[source]: Adjust accordingly.
2021-01-17gnu: freebayes: Update to 1.3.3.Efraim Flashner
* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.3. [source]: Add patch. Add snippet to remove vendored library. [build-system]: Switch to meson-build-system. [inputs]: Remove bamtools. Add fastahack, smithwaterman, tabixpp. [native-inputs]: Remove procps, python-2, tabixpp source, smithwaterman source, multichoose source, fsom source, filevercmp source, fastahack source, bash-tap source. Add bash-tap, grep, pkg-config, simde, vcflib. [arguments]: Drop make-flags. Don't delete 'configure phase. Delete custom 'fix-tests, 'build-tabixpp-and-vcflib, 'fix-makefiles, 'install phases. Adjust 'unpack-submodule-sources phase to changed native-inputs. Add new 'patch-source phase.
2021-01-14gnu: vcflib: Update to 1.0.2.Efraim Flashner
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.2. [source]: Download using git-fetch. Remove patch. Update snippet to use packaged libraries. [build-system]: Switch to cmake-build-system. [inputs]: Add bzip2. [native-inputs]: Add package-source of fsom. [arguments]: Delete custom 'set-flags, 'install phases. Don't delete 'configure phase. Adjust 'unpack-submodule-sources phase. * gnu/packages/patches/vcflib-use-shared-libraries.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-01-14gnu: Add ipxe.Vincent Legoll
* gnu/packages/bootloaders.scm (ipxe): New variable. * gnu/packages/patches/ipxe-reproducible-geniso.patch: New file … * gnu/local.mk (dist_patch_DATA): … add it. Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr> Co-authored-by: Brice Waegeneire <brice@waegenei.re> Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2021-01-11gnu: podofo: Update to 0.9.7.Tobias Geerinckx-Rice
* gnu/packages/pdf.scm (podofo): Update to 0.9.7. [source]: Remove patch. * gnu/packages/patches/podofo-cmake-3.12.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-01-11gnu: guile: Fix tests on emulated architectures.Mathieu Othacehe
The stack overflow test limits the virtual memory size using setrlimit with RLIMIT_AS argument. This is ignored when using QEMU transparent emulation, causing the test to crash. * gnu/packages/patches/guile-2.2-skip-so-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/guile.scm (guile-3.0-latest): Add it.
2021-01-10gnu: tipp10: Build with qt-5.Efraim Flashner
* gnu/packages/education.scm (tipp10)[source]: Add new patches. [inputs]: Remove qt-4, sqlite. Add qtbase, qtmultimedia. * gnu/packages/patches/tipp10-disable-downloader.patch, gnu/packages/patches/tipp10-qt5.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
2021-01-10Merge branch 'master' into stagingEfraim Flashner
2021-01-10gnu: pulseview: Fix qt-5.15 compatibility.Efraim Flashner
* gnu/packages/electronics.scm (pulseview)[source]: Add patch. * gnu/packages/patches/pulseview-qt515-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
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