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2015-03-04Merge branch 'core-updates'.Ludovic Courtès
2015-03-02gnu: Add crossmap.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (crossmap): New variable. * gnu/packages/patches/crossmap-allow-system-pysam.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2015-02-26Merge branch 'master' into core-updatesLudovic Courtès
2015-02-26gnu: grep: Apply fix for CVE-2015-1345.Mark H Weaver
* gnu/packages/patches/grep-CVE-2015-1345.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/base.scm (grep): Add patch.
2015-02-26gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}.Mark H Weaver
* gnu/packages/patches/icecat-CVE-2015-0822.patch, gnu/packages/patches/icecat-CVE-2015-0827-pt-1.patch, gnu/packages/patches/icecat-CVE-2015-0827-pt-2.patch, gnu/packages/patches/icecat-CVE-2015-0827-pt-3.patch, gnu/packages/patches/icecat-CVE-2015-0831-pt-1.patch, gnu/packages/patches/icecat-CVE-2015-0831-pt-2.patch, gnu/packages/patches/icecat-CVE-2015-0836-pt-01.patch, gnu/packages/patches/icecat-CVE-2015-0836-pt-02.patch, gnu/packages/patches/icecat-CVE-2015-0836-pt-03.patch, gnu/packages/patches/icecat-CVE-2015-0836-pt-04.patch, gnu/packages/patches/icecat-CVE-2015-0836-pt-05.patch, gnu/packages/patches/icecat-CVE-2015-0836-pt-06.patch, gnu/packages/patches/icecat-CVE-2015-0836-pt-07.patch, gnu/packages/patches/icecat-CVE-2015-0836-pt-08.patch, gnu/packages/patches/icecat-CVE-2015-0836-pt-09.patch, gnu/packages/patches/icecat-CVE-2015-0836-pt-10.patch, gnu/packages/patches/icecat-CVE-2015-0836-pt-11.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
2015-02-26gnu: Fix luajit installationTomáš Čech
* gnu/packages/lua.scm (luajit): Apply 2 patches. * gnu-system.am (dist_patch_DATA): Register 2 patches. * gnu/packages/patches/luajit-no_ldconfig.patch: New file. * gnu/packages/patches/luajit-symlinks.patch: New file.
2015-02-25gnu: Add OpenEXR and IlmBase.Ludovic Courtès
* gnu/packages/graphics.scm (ilmbase, openexr): New variables. * gnu/packages/patches/openexr-missing-samples.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2015-02-25gnu: Add cpufrequtils.Taylan Ulrich Bayırlı/Kammer
* gnu/packages/linux.scm (cpufrequtils): New variable. * gnu/packages/patches/cpufrequtils-fix-aclocal.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2015-02-25gnu: Add python2-rdflib.Andreas Enge
* gnu/packages/rdf.scm (python2-rdflib): New variable. (python-rdflib): Add patch. * gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch: New file. * gnu-system.am (dist_patch_DATA): Register patch.
2015-02-21gnu: Add weex.Andreas Enge
* gnu/packages/ftp.scm (weex): New variable. * gnu/packages/patches/weex-vacopy.patch: New file. * gnu-system.am (dist_patch_DATA): Register patch.
2015-02-21gnu: chmlib: Patch for compilation on mips.Andreas Enge
* gnu/packages/patches/chmlib-inttypes.patch: New file. * gnu-system.am (dist_patch_DATA): Register patch. * gnu/packages/ebook.scm (chmlib): Apply patch.
2015-02-16gnu: libtool and libltdl: Update to 2.4.6.Mark H Weaver
* gnu/packages/autotools.scm (libtool, libltdl): Update to 2.4.6. * gnu/packages/patches/libtool-skip-tests.patch: Adapt to 2.4.6.
2015-02-11Merge branch 'master' into core-updatesLudovic Courtès
2015-02-11gnu: glibc: Update to 2.21.Ludovic Courtès
* gnu/packages/base.scm (glibc): Update to 2.21. Remove 3 patches no longer needed. * gnu/packages/patches/glibc-CVE-2012-3406.patch, gnu/packages/patches/glibc-CVE-2014-7817.patch, gnu/packages/patches/glibc-mips-dangling-vfork-ref.patch: Remove. * gnu-system.am (dist_patch_DATA): Adjust accordingly.
2015-02-11gnu: Add glibc-locales.Ludovic Courtès
* gnu/packages/patches/glibc-locales.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/base.scm (glibc-locales): New variable.
2015-02-06gnu: wicd: Fix curses client to work with urwid 1.3.Mark H Weaver
* gnu/packages/patches/wicd-urwid-1.3.patch: New file. * gnu-system (dist_patch_DATA): Add it. * gnu/packages/wicd.scm (wicd): Add patch.
2015-02-05gnu: Add ngircd.Taylan Ulrich Bayırlı/Kammer
* gnu/packages/messaging.scm (ngircd): New variable. * gnu/packages/patches/ngircd-no-dns-in-tests.patch: New file. * gnu/packages/patches/ngircd-handle-zombies.patch: New file. * gnu-system.am (dist_patch_DATA): Add them.
2015-02-03gnu: Add librep.宋文武
* gnu/packages/sawfish.scm: New file. * gnu/packages/patches/librep-rules.mk.patch: New file. * gnu-system.am: Add them.
2015-02-02gnu: libvpx: Apply bug fixes.Mark H Weaver
Fixes build on armhf. * gnu/packages/patches/libvpx-fix-armhf-link.patch, gnu/packages/patches/libvpx-fix-ssse3-quantize.patch, gnu/packages/patches/libvpx-vp9-out-of-bounds-access.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/video.scm (libvpx): Add patches. On armhf, add additional configure flags to avoid requiring support for NEON.
2015-01-30gnu: icecat: Update to 31.4.0.Mark H Weaver
* gnu/packages/patches/icecat-CVE-2014-1587-bug-1042567.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1072847.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1079729.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1080312.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1089207.patch, gnu/packages/patches/icecat-CVE-2014-1590.patch, gnu/packages/patches/icecat-CVE-2014-1592.patch, gnu/packages/patches/icecat-CVE-2014-1593.patch, gnu/packages/patches/icecat-CVE-2014-1594.patch, gnu/packages/patches/icecat-CVE-2014-8634-pt1.patch, gnu/packages/patches/icecat-CVE-2014-8634-pt2.patch, gnu/packages/patches/icecat-CVE-2014-8638-pt1.patch, gnu/packages/patches/icecat-CVE-2014-8638-pt2.patch, gnu/packages/patches/icecat-CVE-2014-8639.patch, gnu/packages/patches/icecat-CVE-2014-8641.patch, gnu/packages/patches/icecat-armhf-xpcom.patch: Remove files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/gnuzilla.scm: Update to 31.4.0. Remove patches.
2015-01-30gnu: bowtie: fix build errorsRicardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie): Add 'supported-systems' field and add Makefile patch. * gnu/packages/patches/bowtie-fix-makefile.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2015-01-25Merge branch 'wip-gobject-introspection'Mark H Weaver
2015-01-25gnu: Add python-pyqt.Andreas Enge
* gnu/packages/qt.scm (python-pyqt, python2-pyqt): New variables. * gnu/packages/patches/pyqt-configure.patch: New file. * gnu-system.am (dist_patch_DATA): Register patch.
2015-01-23gnu: gobject-introspection: Add patch.Federico Beffa
* gnu/packages/glib.scm (gobject-introspection): Add patch gobject-introspection-girepository.patch.
2015-01-23gnu: util-linux: Update to 2.25.2.Ludovic Courtès
* gnu/packages/linux.scm (util-linux): Update to 2.25.2. Remove util-linux-perl.patch, and add util-linux-tests.patch. Adjust 'snippet'. [arguments]: Remove 'patch-chkdupexe' phase. Add 'pre-check' phase. [native-inputs]: Add NET-BASE. * gnu/packages/patches/util-linux-perl.patch: Remove. * gnu/packages/patches/util-linux-tests.patch: New file. * gnu-system.am (dist_patch_DATA): Adjust accordingly.
2015-01-23gnu: nvi: Fix Berkely DB compatability issues.Marek Benc
* gnu/packages/patches/nvi-db4.patch: New file. * gnu/packages/patches/nvi-dbpagesize-binpower.patch: New file. * gnu/packages/nvi.scm (nvi): Make use of them. * gnu-system.am (dist_patch_DATA): Add them. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-01-18gnu: gobject-introspection: Update to 1.42.0 and add new patch.Federico Beffa
* gnu/packages/glib.scm (gobject-introspection): Update to version 1.42.0. Add patch 'gobject-introspection-absolute-shlib-path.patch' provided by Luca Bruno <lucabru@src.gnome.org> for Nix.
2015-01-16gnu: icecat: Add fixes for CVE-2014-{8634,8638,8639,8641}.Mark H Weaver
* gnu/packages/patches/icecat-CVE-2014-8634-pt1.patch, gnu/packages/patches/icecat-CVE-2014-8634-pt2.patch, gnu/packages/patches/icecat-CVE-2014-8638-pt1.patch, gnu/packages/patches/icecat-CVE-2014-8638-pt2.patch, gnu/packages/patches/icecat-CVE-2014-8639.patch, gnu/packages/patches/icecat-CVE-2014-8641.patch, gnu/packages/patches/icecat-armhf-xpcom.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
2015-01-16Merge branch 'core-updates'Ludovic Courtès
Conflicts: gnu/packages/bootstrap.scm
2015-01-15gnu: gd: Update to 2.1.1.Mark H Weaver
* gnu/packages/patches/gd-mips64-deplibs-fix.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/gd.scm (gd): Update to 2.1.1. Update source URI. Remove patch. Remove 'chdir' phase. Add pkg-config to native-inputs.
2015-01-15gnu: ninja: Disable testcase SubprocessTest.InterruptChild.宋文武
* gnu/packages/patches/ninja-tests.patch: New file. * gnu/packages/ninja.scm (ninja): Add the patch. * gnu-system.am (dist_patch_DATA): Add it.
2015-01-13Merge branch 'master' into core-updatesMark H Weaver
2015-01-12gnu: libcanberra: Add default sounds support.Federico Beffa
* gnu/packages/libcanberra.scm (libcanberra): Add input 'sound-theme-freedesktop'. Add "libcanberra-sound-theme-freedesktop.patch" and related phase 'patch-default-sounds-directory to patch the default sounds directory.
2015-01-11gnu: sqlite: Update to 3.8.7.4.Mark H Weaver
* gnu/packages/patches/sqlite-large-page-size-fix.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/databases.scm (sqlite): Update to 3.8.7.4. Remove patch.
2015-01-11gnu: curl: Update to 7.40.0.Mark H Weaver
* gnu/packages/patches/curl-gss-api-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/curl.scm (curl): Update to 7.40.0. Add patch.
2015-01-11Merge branch 'master' into core-updatesMark H Weaver
2015-01-11gnu: Add nss.宋文武
* gnu/packages/patches/nss-pkgconfig.patch: New file. * gnu-system.scm (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (nss): New variable.
2015-01-07gnu: libtool: Skip nopic test on ARM and MIPS systems.Mark H Weaver
* gnu/packages/patches/libtool-skip-tests.patch: Skip nopic test on ARM and MIPS systems.
2015-01-07gnu: patchelf: On ARM, apply experimental patch to get it working.Mark H Weaver
* gnu/packages/patches/patchelf-rework-for-arm.patch: New file. * gnu-system.am: Add it. * gnu/packages/elf.scm: Apply patch when the target is ARM.
2015-01-07gnu: gmp: Apply fixes for armhf.Mark H Weaver
* gnu/packages/patches/gmp-arm-asm-nothumb.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/multiprecision.scm (gmp): Add patch. Include --build triplet in configure args when building natively. * gnu/packages/commencement.scm (gcc-final): Use bootstrap guile to build gmp-source.
2015-01-07gnu: libtool: Update to 2.4.4.Ludovic Courtès
* gnu/packages/patches/libtool-2.4-skip-tests.patch: Rename to... * gnu/packages/patches/libtool-skip-tests.patch: ... this. * gnu/packages/patches/libtool-skip-tests-for-mips.patch: Remove. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/autotools.scm (libtool): Update to 2.4.4. (libtool-2.4.4): Remove.
2015-01-06gnu: guile: Apply fixes for arm.Mark H Weaver
* gnu/packages/patches/guile-arm-fixes.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-2.0): Add patch.
2015-01-06gnu: patchelf: Update to 0.8.Mark H Weaver
* gnu/packages/elf.scm (patchelf): Update to 0.8. * gnu/packages/patches/patchelf-page-size.patch: Adapt to new version.
2015-01-06Merge branch 'master' into core-updatesMark H Weaver
2015-01-03gnu: libtool: Add 2.4.4.Ludovic Courtès
* gnu/packages/patches/libtool-2.4-skip-tests.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/autotools.scm (libtool-2.4.4): New variable.
2015-01-02gnu: minetest: Update to 0.4.11.David Thompson
* gnu/packages/patches/minetest-subgame-env-var.patch: Delete. * gnu-system.am (dist_patch_DATA): Remove patch. * gnu/packages/games.scm (minetest, minetest-data): Update to 0.4.11.
2014-12-30gnu: glibc: MIPS: Avoid a dangling `vfork@GLIBC_2.0' reference.Mark H Weaver
* gnu/packages/patches/glibc-mips-dangling-vfork-ref.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/base.scm (glibc): Add patch.
2014-12-30gnu: mutt: Add fix for CVE-2014-9116.Mark H Weaver
* gnu/packages/patches/mutt-CVE-2014-9116.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/mail.scm (mutt): Add patch.
2014-12-30gnu: unzip: Add fixes for CVE-2014-{8139,8140,8141}.Mark H Weaver
* gnu/packages/patches/unzip-CVE-2014-8139.patch, gnu/packages/patches/unzip-CVE-2014-8140.patch, gnu/packages/patches/unzip-CVE-2014-8141.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/zip.scm (unzip): Add patches.
2014-12-30gnu: cpio: Add fixes for CVE-2014-9112.Mark H Weaver
* gnu/packages/patches/cpio-CVE-2014-9112-pt1.patch, gnu/packages/patches/cpio-CVE-2014-9112-pt2.patch, gnu/packages/patches/cpio-CVE-2014-9112-pt3.patch, gnu/packages/patches/cpio-CVE-2014-9112-pt4.patch, gnu/packages/patches/cpio-CVE-2014-9112-pt5.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/cpio.scm (cpio): Add patches. Add 'autoconf' to native-inputs.
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