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2022-01-22gnu: python-upsetplot: Update to 0.6.0.Marius Bakke
* gnu/packages/python-science.scm (python-upsetplot): Update to 0.6.0. [source](modules, snippet): New fields. [arguments]: Remove obsolete phase. Respect TESTS? in check phase.
2022-01-22gnu: python-pandas: Remove old version.Marius Bakke
* gnu/packages/python-science.scm (python-pandas-0.25): Remove variable. (python2-pandas): Inherit from PYTHON-PANDAS.
2022-01-17Merge branch 'version-1.4.0'Maxim Cournoyer
With resolved conflicts in: gnu/packages/gnome.scm gnu/packages/openstack.scm gnu/packages/python-xyz.scm
2022-01-10gnu: python-pandas: Update to 1.3.5.Maxim Cournoyer
* gnu/packages/python-science.scm (python-pandas): Update to 1.3.5. [phases]{check}: Add a reference to the network accessing tests issue, now reported upstream. Reinstate the excelwriter tests. [propagated-inputs]: Add python-xlsxwriter. [native-inputs]: Remove python-nose.
2022-01-12gnu: python-scikit-fuzzy: Disable tests.Marius Bakke
* gnu/packages/python-science.scm (python-scikit-fuzzy)[arguments]: Add #:tests?. Remove #:phases.
2022-01-12gnu: python-modin: Permit newer versions of pandas.Marius Bakke
* gnu/packages/python-science.scm (python-modin)[arguments]: Add phase.
2021-12-22gnu: python-scipy: Update to 1.7.3.Efraim Flashner
* gnu/packages/python-science.scm (python-scipy): Update to 1.7.3. [native-inputs]: Add python-pydata-sphinx-theme, python-sphinx-panels. [arguments]: Add phase to build without python-pythran. Remove trailing #t from phases. * gnu/packages/sphinx.scm (python-pydata-sphinx-theme)[native-inputs]: Remove python-plotly.
2021-12-22gnu: python-pingouin: Update to 0.5.0.Arun Isaac
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0.
2021-12-21Revert "gnu: python-pingouin: Update to 0.5.0."Efraim Flashner
This reverts commit f2ad33bc3933b710e5beb6592a9a4925b91b199a. python-pingouin after 0.3.12 needs newer versions of all the python science libraries.
2021-12-16gnu: python-pyflow: Rename to python2-pyflow.Lars-Dominik Braun
The package was never compatible with Python 3. Not adding a deprecated package variant, because going from Python 3 to Python 2 is a breaking change and it’s unlikely anyone ever used the package anyway (it was likely broken). * gnu/packages/python-science.scm (python-pyflow): Move… (python2-pyflow): …here. [arguments]: Use Python 2.
2021-12-13gnu: python-distributed: Update to 2021.11.2.Marius Bakke
* gnu/packages/python-science.scm (python-distributed): Update to 2021.11.2. [source](snippet): New field. [arguments]: Add versioneer phase. [native-inputs]: Add PYTHON-VERSIONEER.
2021-12-13gnu: Simplify package inputs.Ludovic Courtès
This commit was obtained by running: ./pre-inst-env guix style without any additional argument.
2021-12-09gnu: python2-scipy: Override native inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python2-scipy)[native-inputs]: Override; replace gfortran with gfortran-7; add gcc-7.
2021-11-17Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-15gnu: python-pingouin: Update to 0.5.0.Arun Isaac
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0.
2021-11-15gnu: python-scipy: Run tests conditionally.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scipy)[arguments]: Respect TESTS? in 'CHECK phase.
2021-10-25gnu: python-pandas: Update to 1.3.4.Efraim Flashner
* gnu/packages/python-science.scm (python-pandas): Update to 1.3.4.
2021-10-25gnu: python-pandas: Fix building with pytest-6.Efraim Flashner
* gnu/packages/python-science.scm (python-pandas)[arguments]: In custom 'check phase adjust to not fail tests with missing test data.
2021-10-25gnu: python-pandas: Honor #:tests? flag.Efraim Flashner
* gnu/packages/python-science.scm (python-pandas)[arguments]: Adjust custom 'check phase to honor the #:tests? flag.
2021-10-12gnu: python-distributed: Update to 2021.09.1.Felix Gruber
* gnu/packages/python-science.scm (python-distributed): Update to 2021.09.1. [arguments]: Disable failing test test_text. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-12gnu: python-pandas: Update to 1.3.3.Felix Gruber
* gnu/packages/python-science.scm (python-pandas): Update to 1.3.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-29gnu: python2-pandas: Fix build by reverting inherited fields.Ricardo Wurmus
* gnu/packages/python-science.scm (python2-pandas)[arguments]: Do not inherit field; revert to values at commit c0d43f62232507b441edf28c3f051921dfb04c2a. [propagated-inputs]: Do not inherit. [inputs]: Same. [native-inputs]: Same.
2021-07-28gnu: Add python-modin.Ricardo Wurmus
* gnu/packages/python-science.scm (python-modin): New variable.
2021-07-28gnu: Add python-distributed.Ricardo Wurmus
* gnu/packages/python-science.scm (python-distributed): New variable.
2021-07-28gnu: python-pandas: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas): Update to 1.3.0. [arguments]: Adjust check phase.
2021-07-13gnu: Add python-pingouin.Arun Isaac
* gnu/packages/python-science.scm (python-pingouin): New variable.
2021-07-13gnu: Add python-pandas-flavor.Arun Isaac
* gnu/packages/python-science.scm (python-pandas-flavor): New variable.
2021-06-22gnu: python-numpy, python-scipy: Remove dependency on lapack.Ludovic Courtès
The dependency on lapack was unused; the LAPACK interface of OpenBLAS is used instead. The dependency on lapack was added in cba256f8faaa18457fc9b77e8b401f17b89bdd75 (numpy) and 719b01c1575b8599b0dca9f245a9d759032f3168 (scipy). * gnu/packages/python-science.scm (python-scipy)[inputs]: Remove LAPACK. * gnu/packages/python-xyz.scm (python-numpy)[inputs]: Likewise.
2021-06-14gnu: Add python-ruffus.Ricardo Wurmus
* gnu/packages/python-science.scm (python-ruffus): New variable.
2021-06-02gnu: python-vedo: Make pkg-config a native input.Paul Garlick
* gnu/packages/python-science.scm (python-vedo)[inputs]: Move pkg-config to... [native-inputs]: ...here.
2021-06-01gnu: Add python-vedo.Paul Garlick
* gnu/packages/python-science.scm (python-vedo): New variable.
2021-05-31gnu: Add python-pyflow.Roel Janssen
* gnu/packages/python-science.scm (python-pyflow): New variable.
2021-03-13gnu: python-scikit-image: Enable tests.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-image)[arguments]: Add phases related to tests. [native-inputs]: Add python-codecov, python-flake8, python-pytest, python-pytest-cov, python-pytest-localserver, python-wheel. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-13gnu: python-scikit-image: Update to 0.18.1.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.18.1. [propagated-inputs]: Remove python-six. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-12gnu: Add python-upsetplot.Ricardo Wurmus
* gnu/packages/python-science.scm (python-upsetplot): New variable.
2021-03-12gnu: Add python-statannot.Ricardo Wurmus
* gnu/packages/python-science.scm (python-statannot): New variable.
2021-02-09gnu: python-scipy: Update to 1.6.0.Greg Hogan
* gnu/packages/python-xyz.scm (python-scipy): Update to 1.6.0. [inputs]: Add pybind11. [arguments]<#:phases>['change-home-dir]: New phase. Signed-off-by: Jelle Licht <jlicht@fsfe.org>
2020-11-24gnu: Add python-baycomp.Vinicius Monego
* gnu/packages/python-science.scm (python-baycomp): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-08-16gnu: Add python-sgp4.Vinicius Monego
* gnu/packages/python-science.scm (python-sgp4): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-10gnu: Add python-bottleneck.Vinicius Monego
* gnu/packages/python-science.scm (python-bottleneck): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-07-08gnu: python-scikit-image: Add dependencies.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-image)[propagated-inputs]: Add python-imageio and python-tifffile. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-07-08gnu: Add python-scikit-fuzzy.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-fuzzy): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-06-23gnu: Add python-msgpack-numpy.Ricardo Wurmus
* gnu/packages/python-science.scm (python-msgpack-numpy): New variable.
2020-06-23gnu: python-scikit-image: Update to 0.17.2.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.17.2.
2020-06-22gnu: Add python-xarray.Pierre Langlois
From 27ec21904f769c1e8114f767972d9037e1e9f68a Mon Sep 17 00:00:00 2001 From: Pierre Langlois <pierre.langlois@gmx.com> Date: Thu, 18 Jun 2020 00:58:02 +0200 Subject: [PATCH 4/5] gnu: Add python-xarray. * gnu/package/python-science.scm (python-xarray): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-22gnu: python-pandas: Update to 1.0.5.Pierre Langlois
But also keep version 0.25.3 around for packages requiring an earlier versions, as well as version 0.24.2 for a version with python2. * gnu/packages/python-science.scm (python-pandas): Update to 1.0.5. [arguments]: Adapt 'patch-which phase. Add new 'prepare-x phase. Do not delete tests that depend on "moto", they are skipped automatically. [propagated-inputs]: Add python-jinja2. [inputs]: Add xsel and xclip. [native-inputs]: Add xorg-server-for-tests so we can test clipboard support. (python-pandas-0.24): New variable. (python2-pandas): Inherit from python-pandas-0.25. * gnu/packages/bioinformatics.scm (python-biom-format)[propagated-inputs]: Switch to python-pandas-0.25. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-30gnu: Add python2-weave.Ricardo Wurmus
* gnu/packages/python-science.scm (python2-weave): New variable.
2020-04-09gnu: Remove python2-scikit-image.Marius Bakke
Some of the packages that this depends upon no longer supports Python 2. * gnu/packages/python-science.scm (python2-scikit-image): Remove variable.
2020-03-15gnu: python2-pandas: Fix build with Python 2.7.17.Marius Bakke
While at it, fix the inheritance. * gnu/packages/python-science.scm (python2-pandas): Use INHERIT instead of PACKAGE/INHERIT. [source](modules, snippet): New fields.
2020-02-19gnu: python-scikit-image: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/python-science.scm (python-scikit-image)[home-page]: Use HTTPS.
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