Age | Commit message (Collapse) | Author |
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* gnu/packages/python-science.scm (python-pandas): Update to 1.3.4.
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* gnu/packages/python-science.scm (python-pandas)[arguments]: In custom
'check phase adjust to not fail tests with missing test data.
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* gnu/packages/python-science.scm (python-pandas)[arguments]: Adjust
custom 'check phase to honor the #:tests? flag.
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* gnu/packages/python-science.scm (python-distributed): Update to
2021.09.1.
[arguments]: Disable failing test test_text.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-pandas): Update to 1.3.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python2-pandas)[arguments]: Do not inherit
field; revert to values at commit c0d43f62232507b441edf28c3f051921dfb04c2a.
[propagated-inputs]: Do not inherit.
[inputs]: Same.
[native-inputs]: Same.
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* gnu/packages/python-science.scm (python-modin): New variable.
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* gnu/packages/python-science.scm (python-distributed): New variable.
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* gnu/packages/python-science.scm (python-pandas): Update to 1.3.0.
[arguments]: Adjust check phase.
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* gnu/packages/python-science.scm (python-pingouin): New variable.
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* gnu/packages/python-science.scm (python-pandas-flavor): New variable.
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The dependency on lapack was unused; the LAPACK interface of OpenBLAS is
used instead. The dependency on lapack was added in
cba256f8faaa18457fc9b77e8b401f17b89bdd75 (numpy) and
719b01c1575b8599b0dca9f245a9d759032f3168 (scipy).
* gnu/packages/python-science.scm (python-scipy)[inputs]: Remove
LAPACK.
* gnu/packages/python-xyz.scm (python-numpy)[inputs]: Likewise.
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* gnu/packages/python-science.scm (python-ruffus): New variable.
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* gnu/packages/python-science.scm (python-vedo)[inputs]: Move pkg-config to...
[native-inputs]: ...here.
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* gnu/packages/python-science.scm (python-vedo): New variable.
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* gnu/packages/python-science.scm (python-pyflow): New variable.
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* gnu/packages/python-science.scm (python-scikit-image)[arguments]: Add phases
related to tests.
[native-inputs]: Add python-codecov, python-flake8, python-pytest,
python-pytest-cov, python-pytest-localserver, python-wheel.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/python-science.scm (python-scikit-image): Update to 0.18.1.
[propagated-inputs]: Remove python-six.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/python-science.scm (python-upsetplot): New variable.
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* gnu/packages/python-science.scm (python-statannot): New variable.
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* gnu/packages/python-xyz.scm (python-scipy): Update to 1.6.0.
[inputs]: Add pybind11.
[arguments]<#:phases>['change-home-dir]: New phase.
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
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* gnu/packages/python-science.scm (python-baycomp): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/python-science.scm (python-sgp4): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* gnu/packages/python-science.scm (python-bottleneck): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* gnu/packages/python-science.scm (python-scikit-image)[propagated-inputs]: Add
python-imageio and python-tifffile.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/python-science.scm (python-scikit-fuzzy): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/python-science.scm (python-msgpack-numpy): New variable.
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* gnu/packages/python-science.scm (python-scikit-image): Update to 0.17.2.
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From 27ec21904f769c1e8114f767972d9037e1e9f68a Mon Sep 17 00:00:00 2001
From: Pierre Langlois <pierre.langlois@gmx.com>
Date: Thu, 18 Jun 2020 00:58:02 +0200
Subject: [PATCH 4/5] gnu: Add python-xarray.
* gnu/package/python-science.scm (python-xarray): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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But also keep version 0.25.3 around for packages requiring an earlier
versions, as well as version 0.24.2 for a version with python2.
* gnu/packages/python-science.scm (python-pandas): Update to 1.0.5.
[arguments]: Adapt 'patch-which phase. Add new 'prepare-x phase. Do not
delete tests that depend on "moto", they are skipped automatically.
[propagated-inputs]: Add python-jinja2.
[inputs]: Add xsel and xclip.
[native-inputs]: Add xorg-server-for-tests so we can test clipboard support.
(python-pandas-0.24): New variable.
(python2-pandas): Inherit from python-pandas-0.25.
* gnu/packages/bioinformatics.scm (python-biom-format)[propagated-inputs]:
Switch to python-pandas-0.25.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python2-weave): New variable.
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Some of the packages that this depends upon no longer supports Python 2.
* gnu/packages/python-science.scm (python2-scikit-image): Remove variable.
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While at it, fix the inheritance.
* gnu/packages/python-science.scm (python2-pandas): Use INHERIT instead of
PACKAGE/INHERIT.
[source](modules, snippet): New fields.
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* gnu/packages/python-science.scm (python-scikit-image)[home-page]: Use HTTPS.
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* gnu/packages/python-xyz.scm (python-lxml): Move from here ...
* gnu/packages/xml.scm (python-lxml): ... to here.
* gnu/packages/django.scm, gnu/packages/drones.scm,
gnu/packages/libreoffice.scm, gnu/packages/nutrition.scm,
gnu/packages/openstack.scm, gnu/packages/pulseaudio.scm,
gnu/packages/python-science.scm, gnu/packages/tryton.scm,
gnu/packages/wireservice.scm: Adjust module imports.
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* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from
here...
* gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here.
* gnu/packages/benchmark.scm, gnu/packages/databases.scm,
gnu/packages/graph.scm, gnu/packages/parallel.scm,
gnu/packages/serialization.scm: Import (gnu packages python-science).
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* gnu/packages/python-xyz.scm (python-scipy, python2-scipy): Move these from
here...
* gnu/packages/python-science.scm (python-scipy, python2-scipy): ...to here.
* gnu/packages/bioinformatics.scm, gnu/packages/machine-learning.scm,
gnu/packages/statistics.scm: Adjust module imports.
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* gnu/packages/python-xyz.scm (python-scikit-image, python2-scikit-image):
Move these two from here...
* gnu/packages/python-science.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
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