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2022-09-10gnu: Add comments to the bottom of a few package modules.•••This will hopefully discourage patches which add new packages to the bottom of files, as this increases the likelihood of conflicts when applying patches. If there are more specific ways that packages should be arranged in specific modules, this message can be updated accordingly. * gnu/packages/bioconductor.scm: Add comment discouraging adding packages to the bottom of the file. * gnu/packages/bioinformatics.scm: ditto. * gnu/packages/cran.scm: ditto. * gnu/packages/crates-io.scm: ditto. * gnu/packages/emacs-xyz.scm: ditto. * gnu/packages/golang.scm: ditto. * gnu/packages/guile-xyz.scm: ditto. * gnu/packages/haskell-xyz.scm: ditto. * gnu/packages/java.scm: ditto. * gnu/packages/julia-xyz.scm: ditto. * gnu/packages/lisp-xyz.scm: ditto. * gnu/packages/ocaml.scm: ditto. * gnu/packages/perl.scm: ditto. * gnu/packages/python-science.scm: ditto. * gnu/packages/python-xyz.scm: ditto. * gnu/packages/ruby.scm: ditto. * gnu/packages/tex.scm: ditto. Christopher Baines
2022-09-09Merge branch 'master' into stagingMarius Bakke
2022-09-09gnu: python-psutil: Update to 5.9.2.•••* gnu/packages/python-xyz.scm (python-psutil): Update to 5.9.2. Marius Bakke
2022-09-09gnu: python-pathlib2: Update to 2.3.7.post1.•••* gnu/packages/python-xyz.scm (python-pathlib2): Update to 2.3.7post1. Marius Bakke
2022-09-09gnu: python-beautifulsoup4: Update to 4.11.1.•••* gnu/packages/python-xyz.scm (python-beautifulsoup4): Update to 4.11.1. [arguments]: Override check phase. [native-inputs]: Add PYTHON-PYTEST. Marius Bakke
2022-09-08Merge branch 'master' into stagingMarius Bakke
2022-09-08gnu: Add python-pymonad.•••* gnu/packages/python-xyz.scm (python-pymonad): New variable. Arun Isaac
2022-09-07gnu: python-sympy: Update to 1.11.1.•••All dependents successfully build except the continued failure of python-dolfin-adjoint: http://ci.guix.gnu.org/build/1306546/details * gnu/packages/python-xyz.scm (python-sympy): Update to 1.11.1. Signed-off-by: Marius Bakke <marius@gnu.org> Greg Hogan
2022-09-07Merge branch 'master' into stagingMarius Bakke
2022-09-07gnu: python-cfgv: Update to 3.3.1.•••* gnu/packages/python-xyz.scm (python-cfgv): Update to 3.3.1. [arguments]: Respect TESTS? keyword in check phase. [native-inputs]: Remove PYTHON-COVERAGE and PYTHON-COVDEFAULTS. Marius Bakke
2022-09-07gnu: python-fs: Update to 2.4.16.•••* gnu/packages/python-xyz.scm (python-fs): Update to 2.4.16. Marius Bakke
2022-09-07gnu: python-cairocffi: Update to 1.3.0.•••* gnu/packages/python-xyz.scm (python-cairocffi): Update to 1.3.0. Marius Bakke
2022-09-07gnu: python-xlsxwriter: Update to 3.0.3.•••* gnu/packages/python-xyz.scm (python-xlsxwriter): Update to 3.0.3. Marius Bakke
2022-09-07gnu: python-jdcal: Update to 1.4.1.•••* gnu/packages/python-xyz.scm (python-jdcal): Update to 1.4.1. [arguments]: Use G-expression and respect TESTS? keyword. Marius Bakke
2022-09-07gnu: python-et-xmlfile: Update to 1.1.0.•••* gnu/packages/python-xyz.scm (python-et-xmlfile): Update to 1.1.0. [source]: Switch to HG-FETCH. [arguments]: Use G-expression and respect TESTS? keyword. Marius Bakke
2022-09-01Merge branch 'master' into stagingMarius Bakke
2022-09-01gnu: Add python-plotille.•••* gnu/packages/python-xyz.scm (python-plotille): New variable. Signed-off-by: David Thompson <davet@gnu.org> Peter Polidoro
2022-09-01Merge branch 'master' into stagingMarius Bakke
2022-09-01gnu: python-tox: Move to python-check.•••* gnu/packages/python-xyz.scm (python-tox): Move from here... * gnu/packages/python-check.scm (python-tox): ... to here. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Nicolas Graves
2022-08-31gnu: Add python-typing-extensions-next.•••* gnu/packages/python-xyz.scm (python-typing-extensions-next): New variable. Maxim Cournoyer
2022-08-31gnu: Add python-types-protobuf.•••* gnu/packages/python-xyz.scm (python-types-protobuf): New variable. Maxim Cournoyer
2022-08-31gnu: python-simplejson: Update to 3.17.6.•••* gnu/packages/python-xyz.scm (python-simplejson): Update to 3.17.6. Signed-off-by: David Thompson <davet@gnu.org> jgart via Guix-patches via
2022-08-30Merge branch 'master' into stagingMarius Bakke
2022-08-30gnu: python-jaraco-context: Don't ask to run tests when cross-compiling.•••* gnu/packages/python-xyz.scm (python-jaraco-context)[arguments]{#:tests?}: When cross-compiling, set to #false. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Maxime Devos
2022-08-30gnu: python-jupyter-client: Don't ask to run tests when cross-compiling.•••* gnu/packages/python-xyz.scm (python-jupyter-client)[arguments]{#:tests?}: When cross-compiling, set to #false. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Maxime Devos
2022-08-30gnu: python-pip-run: Don't ask to run tests when cross-compiling.•••* gnu/packages/python-xyz.scm (python-pip-run)[arguments]{#:tests?}: When cross-compiling, set to #false. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Maxime Devos
2022-08-30gnu: python-jaraco-functools: Don't ask to run tests when cross-compiling.•••* gnu/packages/python-xyz.scm (python-jaraco-functools)[arguments]{#:tests?}: When cross-compiling, set to #false. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Maxime Devos
2022-08-30gnu: python-path: Don't ask to run tests when cross-compiling.•••* gnu/packages/python-xyz.scm (python-path)[arguments]{#:tests?}: When cross-compiling, set to #false. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Maxime Devos
2022-08-30gnu: python-fonttools-full: Don't ask to run tests when cross-compiling.•••* gnu/packages/python-xyz.scm (python-fonttools-full)[arguments]{#:tests?}: When cross-compiling, set to #false. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Maxime Devos
2022-08-30gnu: Add python-mpv.•••* gnu/packages/python-xyz.scm (python-mpv): Add variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Tomasz Jeneralczyk
2022-08-29gnu: snakemake-7: Convert dependencies to propagated-inputs•••* gnu/packages/python-xyz.scm (snakemake-7)[inputs]: Change to ... [propagated-inputs]: ... this, to ensure that "python -m snakemake" works (because snakemake uses it internally). Signed-off-by: Marius Bakke <marius@gnu.org> Konrad Hinsen
2022-08-29gnu: snakemake-6: Convert dependencies to propagated-inputs•••* gnu/packages/python-xyz.scm (snakemake-6)[inputs]: Change to ... [propagated-inputs]: ... this, to ensure that "python -m snakemake" works (because snakemake uses it internally). Signed-off-by: Marius Bakke <marius@gnu.org> Konrad Hinsen
2022-08-29gnu: snakemake-7: Fix cluster execution bug•••* gnu/packages/python-xyz.scm (snakemake-7)[arguments]: Revise the patch for the cluster execution script Signed-off-by: Marius Bakke <marius@gnu.org> Konrad Hinsen
2022-08-28Merge branch 'master' into stagingMarius Bakke
2022-08-27gnu: scons: Move to (gnu packages build-tools).•••* gnu/packages/python-xyz.scm (scons, scons-python2): Move from here ... * gnu/packages/build-tools.scm (scons, scons-python2): ... to here. * gnu/packages/direct-connect.scm, gnu/packages/disk.scm, gnu/packages/game-development.scm, gnu/packages/gps.scm, gnu/packages/image.scm, gnu/packages/installers.scm, gnu/packages/web.scm, gnu/packages/xdisorg.scm: Adjust module imports accordingly. * guix/build-system/scons.scm (default-scons): Likewise. Marius Bakke
2022-08-27gnu: python-click: Update to 8.1.3.•••* gnu/packages/python-xyz.scm (python-click): Update to 8.1.3. Signed-off-by: Marius Bakke <marius@gnu.org> Peter Polidoro
2022-08-27gnu: python-cython: Update to 0.29.32.•••* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.32. Marius Bakke
2022-08-27Merge branch 'master' into stagingMarius Bakke
2022-08-25gnu: python-natsort: Fix the test suite on slower machines.•••* gnu/packages/python-xyz.scm (python-natsort)[arguments]: Add custom phase to remove the time limit for some of the tests. Efraim Flashner
2022-08-25gnu: python-natsort: Reflow description.•••* gnu/packages/python-xyz.scm (python-natsort)[description]: Rewrap description to normal columns. Efraim Flashner
2022-08-25gnu: python-natsort: Honor the #:tests? flag.•••* gnu/packages/python-xyz.scm (python-natsort)[arguments]: Adjust the custom 'check phase to honor the #:tests? flag. Efraim Flashner
2022-08-23gnu: Add python-ncls.•••* gnu/packages/python-xyz.scm (python-ncls): New variable. Ricardo Wurmus
2022-08-23gnu: python-shapely: Update to 1.8.4.•••* gnu/packages/python-xyz.scm (python-shapely): Update to 1.8.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Felix Gruber
2022-08-21gnu: python-jaraco-functools: Disable flaky test.•••* gnu/packages/python-xyz.scm (python-jaraco-functools)[arguments]: Skip the "test_function_throttled". Reported by Lumine in #guix. Tobias Geerinckx-Rice
2022-08-22gnu: i3-autotiling: Update to 1.6.1.•••* gnu/packages/python-xyz.scm (i3-autotiling): Update to 1.6.1. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Hilton Chain
2022-08-21gnu: python-wand: Update to 0.6.10.•••* gnu/packages/python-xyz.scm (python-wand): Update to 0.6.10. [description]: Remove text about the unused C API. Vinicius Monego
2022-08-17gnu: Add python-lief.•••From c865b31b702d0e5f86faaadcb306cea269ae1109 Mon Sep 17 00:00:00 2001 From: Hilton Chain <hako@ultrarare.space> Date: Tue, 16 Aug 2022 21:26:33 +0800 Subject: [PATCH v3] gnu: Add python-lief. * gnu/packages/python-xyz.scm (python-lief): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Hilton Chain
2022-08-16gnu: python-daemon: Remove unused input.•••* gnu/packages/python-xyz.scm (python-daemon)[native-inputs]: Remove PYTHON-UNITTEST2. Marius Bakke
2022-08-16gnu: python-case: Remove unused input.•••* gnu/packages/python-xyz.scm (python-case)[propagated-inputs]: Remove PYTHON-UNITTEST2. Marius Bakke
2022-08-16gnu: python-posix-ipc: Remove unused input.•••* gnu/packages/python-xyz.scm (python-posix-ipc)[native-inputs]: Remove. Marius Bakke
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