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2019-02-07gnu: python: Update to 3.7.2.Marius Bakke
* gnu/packages/python.scm (python-3.7): Update to 3.7.2.
2019-02-07gnu: python2: Incorporate grafted changes.Marius Bakke
* gnu/packages/python.scm (python-2.7)[source](patches): Add python2-CVE-2018-14647.patch and python2-CVE-2018-1000802.patch. [replacement]: Remove field. (python-2/fixed): Remove variable.
2019-02-06Merge branch 'master' into core-updatesRicardo Wurmus
2019-01-22gnu: python2: Fix test flags.Eric Bavier
Reverts a9883939977f5fb0bd62d1dccb1ab0a772a4b720 in favor of a cleaner approach. * gnu/packages/python.scm (python-2.7)[arguments]: 'EXTRATESTOPTS' -> 'TESTOPTS'. This overrides the default '-l' argument for memory leak checks which is not compatible with the -j for parallelism.
2019-01-21gnu: python-futures: Enable tests.Christopher Baines
Re-enable the tests, as the python-2 package now has the support directory. Also, switch to running the tests via the test_futures.py script to avoid errors like: AttributeError: 'AsCompletedTests' object has no attribute 'executor' * gnu/packages/python.scm (python2-futures)[arguments]: Run the test_futures.py script to run the tests.
2019-01-21gnu: python-2.7: Include /lib/python.../test/support.Christopher Baines
Don't remove the support directory from the /lib/python.../test/ directory, as this is used from the test_support module. /gnu/store/...-python2-2.7.15/lib/python2.7/test/test_support.py:2: in <module> import test.support E ImportError: No module named support * gnu/packages/python.scm (python-2.7)[arguments]: Change the 'remove-tests phase to not remove the support directory.
2019-01-16gnu: Move dbm databases to new module.Ricardo Wurmus
* gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here... * gnu/packages/dbm.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/audio.scm, gnu/packages/avahi.scm, gnu/packages/backup.scm, gnu/packages/cobol.scm, gnu/packages/cyrus-sasl.scm, gnu/packages/databases.scm, gnu/packages/finance.scm, gnu/packages/game-development.scm, gnu/packages/gnome.scm, gnu/packages/guile.scm, gnu/packages/ibus.scm, gnu/packages/kerberos.scm, gnu/packages/linux.scm, gnu/packages/mail.scm, gnu/packages/man.scm, gnu/packages/nvi.scm, gnu/packages/openldap.scm, gnu/packages/package-management.scm, gnu/packages/php.scm, gnu/packages/pulseaudio.scm, gnu/packages/python.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/sawfish.scm: Update module references.
2019-01-16gnu: Move sqlite to separate module.Ricardo Wurmus
* gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5, sqlite-with-column-metadata): Move variables from here... * gnu/packages/sqlite.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/apl.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/code.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/dc.scm, gnu/packages/disk.scm, gnu/packages/ebook.scm, gnu/packages/education.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/file-systems.scm, gnu/packages/freedesktop.scm, gnu/packages/ftp.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gps.scm, gnu/packages/guile.scm, gnu/packages/ibus.scm, gnu/packages/kerberos.scm, gnu/packages/kodi.scm, gnu/packages/lisp.scm, gnu/packages/mail.scm, gnu/packages/messaging.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nfs.scm, gnu/packages/ocaml.scm, gnu/packages/package-management.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/php.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/scheme.scm, gnu/packages/sync.scm, gnu/packages/syndication.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/web-browsers.scm, gnu/packages/webkit.scm: Adjust module references.
2019-01-15gnu: Separate Python core packages from the rest.Ricardo Wurmus
* gnu/packages/python.scm: Move hundreds of package definitions from here... * gnu/packages/python-xyz.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/benchmark.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/cluster.scm, gnu/packages/compression.scm, gnu/packages/connman.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/direct-connect.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/elf.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/enlightenment.scm, gnu/packages/finance.scm, gnu/packages/fltk.scm, gnu/packages/fontutils.scm, gnu/packages/freedesktop.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/gtk.scm, gnu/packages/ham-radio.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/kde-frameworks.scm, gnu/packages/key-mon.scm, gnu/packages/libffi.scm, gnu/packages/libreoffice.scm, gnu/packages/libusb.scm, gnu/packages/lirc.scm, gnu/packages/logging.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/medical.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nutrition.scm, gnu/packages/openldap.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/polkit.scm, gnu/packages/protobuf.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/qt.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/search.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/simulation.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wicd.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm: Update module references.
2019-01-15gnu: python-numpy-documentation: Add missing packages to texlive-union.Ricardo Wurmus
* gnu/packages/python.scm (python-numpy-documentation)[native-inputs]: Add texlive-fonts-cm-super and texlive-latex-needspace to texlive-union.
2019-01-14gnu: python-pycodestyle: Fix build with Python 3.7.Eric Bavier
* gnu/packages/patches/python-pycodestyle-stdlib-tokenize-fix.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-pycodestyle)[source]: Use it.
2019-01-13gnu: python-2.7: Fix build.Christopher Baines
The -j flag is passed in through #:make-flags and EXTRATESTOPTS. This is combined with the TESTOPTS, and in Python 2, that includes the -l flag by default. The -l flag, is for finding memory leaks in tests, and is incompatible with the -j flag, and the build previously failed at the start of the 'check phase. Therefore, remove the -l flag from the Python 2 testsuite, as it doesn't sound like a useful thing to do when building the package for Guix. * gnu/packages/python.scm (python-2.7): Add 'remove-findleaks-from-testopts phase.
2019-01-13gnu: Add python-miniboa.Christopher Baines
python2-miniboa is required for the linkchecker testsuite. * gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
2019-01-13gnu: python-pillow: Update to 5.4.1.Christopher Baines
I'm looking at this, as this release fixes an issue with the Django testsuite: https://github.com/python-pillow/Pillow/pull/3525 * gnu/packages/python.scm (python-pillow): Update to 5.4.1.
2019-01-13gnu: Add python-doctest-ignore-unicode.Ricardo Wurmus
* gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
2019-01-12gnu: python-pillow: Update homepage.Kei Kebreau
* gnu/packages/python.scm (python-pillow)[homepage]: Update URL.
2019-01-12gnu: python-pillow: Update to 5.4.0Kei Kebreau
* gnu/packages/python.scm (python-pillow): Update to 5.4.0. [arguments]: Add 'patch-ldconfig' phase.
2019-01-09gnu: python-pygit2: Update to 0.27.3.Efraim Flashner
* gnu/packages/python.scm (python-pygit2): Update to 0.27.3. [arguments]: Add custom phase to compile with cffi support. Add custom phase to not require specific versions of python-cffi. [native-inputs]: Add python-pytest.
2019-01-07gnu: python-rpy2: Move to (gnu packages statistics).Ricardo Wurmus
* gnu/packages/python.scm (python-rpy2): Move from here... * gnu/packages/statistics.scm (python-rpy2): ...to here.
2019-01-07gnu: python2-fastlmm: Move to machine-learning.scm.Ludovic Courtès
This is a step towards removing OCaml modules from the closure of (gnu packages python). * gnu/packages/python.scm (python2-fastlmm): Move to... * gnu/packages/machine-learning.scm (python2-fastlmm): ... here.
2019-01-06gnu: python-pyicu: Update to 2.2.Efraim Flashner
* gnu/packages/python.scm (python-pyicu): Update to 2.2.
2019-01-06gnu: python-pysocks: Update to 1.6.8.Efraim Flashner
* gnu/packages/python.scm (python-pysocks): Update to 1.6.8.
2019-01-06gnu: python-packaging: Update to 18.0.Efraim Flashner
* gnu/packages/python.scm (python-packaging): Update to 18.0.
2019-01-06gnu: python-astroid: Update to 2.1.0.Efraim Flashner
* gnu/packages/python.scm (python-astroid): Update to 2.1.0.
2019-01-06gnu: python-imagesize: Update to 1.1.0.Efraim Flashner
* gnu/packages/python.scm (python-imagesize): Update to 1.1.0.
2019-01-06gnu: python-sphinx-alabaster-theme: Update to 0.7.12.Efraim Flashner
* gnu/packages/python.scm (python-sphinx-alabaster-theme): Update to 0.7.12.
2019-01-02gnu: jupyter: Add missing dependency.Ricardo Wurmus
* gnu/packages/python.scm (jupyter)[propagated-inputs]: Add python-qtconsole. [home-page]: Use https URL. [arguments]: Update comment on why tests are disabled.
2019-01-02gnu: Add python-qtconsole.Ricardo Wurmus
* gnu/packages/python.scm (python-qtconsole): New variable.
2019-01-02gnu: python-notebook: Update to 5.7.4.Ricardo Wurmus
* gnu/packages/python.scm (python-notebook): Update to 5.7.4. [arguments]: Use INVOKE for tests. [propagated-inputs]: Remove python-ipython; add python-prometheus-client, python-send2trash, and python-terminado.
2019-01-02gnu: python-jupyter-console: Fix inputs.Ricardo Wurmus
* gnu/packages/python.scm (python-jupyter-console)[propagated-inputs]: Remove python-ipython; replace python-prompt-toolkit with python-prompt-toolkit-1. [native-inputs]: Add python-nose.
2019-01-02gnu: python-ipython: Remove dependency on python-jupyter-core-minimal.Ricardo Wurmus
* gnu/packages/python.scm (python-ipython)[propagated-inputs]: Remove python-jupyter-core-minimal.
2019-01-02gnu: python-ipywidgets: Enable tests.Ricardo Wurmus
* gnu/packages/python.scm (python-ipywidgets)[arguments]: Remove. [native-inputs]: Add python-nose and python-pytest. [propagated-inputs]: Remove python-ipykernel.
2019-01-02gnu: python-widgetsnbextension: Update to 3.4.2.Ricardo Wurmus
* gnu/packages/python.scm (python-widgetsnbextension): Update to 3.4.2. [propagated-inputs]: Add python-ipykernel.
2019-01-02gnu: Add python-send2trash.Ricardo Wurmus
* gnu/packages/python.scm (python-send2trash, python2-send2trash): New variables.
2019-01-02gnu: Add python-prometheus-client.Ricardo Wurmus
* gnu/packages/python.scm (python-prometheus-client, python2-prometheus-client): New variables.
2019-01-02gnu: python-jupyter-client: Update to 5.2.4.Ricardo Wurmus
* gnu/packages/python.scm (python-jupyter-client): Update to 5.2.4.
2019-01-02gnu: python-ipython: Break dependency on python-ipykernel.Ricardo Wurmus
* gnu/packages/python.scm (python-ipython)[propagated-inputs]: Remove python-ipykernel. [arguments]: Delete more broken tests.
2019-01-02gnu: python-ipykernel: Update to 5.1.0.Ricardo Wurmus
* gnu/packages/python.scm (python-ipykernel): Update to 5.1.0. [arguments]: Enable tests. [propagated-inputs]: Add python-ipython. [native-inputs]: Add python-pytest and python-nose.
2019-01-02gnu: python-ipython: Update to 5.8.0.Ricardo Wurmus
* gnu/packages/python.scm (python-ipython): Update to 5.8.0. [propagated-inputs]: Replace python-prompt-toolkit with python-prompt-toolkit-1. [arguments]: Use INVOKE in the "check" phase; return #T from the "fix-tests" phase.
2019-01-02gnu: Add python-prompt-toolkit-1.Ricardo Wurmus
* gnu/packages/python.scm (python-prompt-toolkit-1, python2-prompt-toolkit-1): New variables.
2019-01-02gnu: python-prompt-toolkit: Update to 2.0.7.Ricardo Wurmus
* gnu/packages/python.scm (python-prompt-toolkit): Update to 2.0.7. [arguments]: Enable tests; add phase "post-install-check" and delete "check" phase. [native-inputs]: Add python-pytest.
2019-01-02gnu: python-hy: Use INVOKE.Ricardo Wurmus
* gnu/packages/python.scm (python-hy)[arguments]: Use INVOKE.
2019-01-02gnu: python-clint: Use INVOKE.Ricardo Wurmus
* gnu/packages/python.scm (python-clint)[arguments]: Use INVOKE.
2019-01-02gnu: python-configargparse: Use INVOKE.Ricardo Wurmus
* gnu/packages/python.scm (python-configargparse)[arguments]: Use INVOKE.
2019-01-02gnu: python-docopt: Use INVOKE.Ricardo Wurmus
* gnu/packages/python.scm (python-docopt)[arguments]: Use INVOKE.
2018-12-31gnu: python-lxml: Update to 4.2.5 [fixes CVE-2018-19787].Leo Famulari
* gnu/packages/python.scm (python-lxml, python2-lxml): Update to 4.2.5.
2018-12-26gnu: python-apache-libcloud: Update to 2.4.0.Efraim Flashner
* gnu/packages/python.scm (python-apache-libcloud): Update to 2.4.0.
2018-12-20Merge branch 'master' into core-updatesLudovic Courtès
2018-12-16gnu: python-pyelftools: Fix tests with python 3.7.Vagrant Cascadian
* gnu/packages/python.scm (python-pyelftools) [native-inputs]: Remove python-setuptools. [arguments]: Add set-pythonpath phase. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2018-12-12gnu: python-celery: Update to 4.2.1.Christopher Baines
This is an attempt to get the package building after the update to Python 3.7. I'm not sure this totally works, as the tests detect an incompatibility with Python 3.7 due to use of "async". But with the tests disabled, you can at least import the celery module, which is a start. * gnu/packages/python.scm (python-celery): Update to 4.2.1. [arguments]: Switch to py.test, from nose, disable the tests and loosen the requirements on pytest. [native-inputs]: Remove python-nose, add python-pytest and python-case. [home-page]: Change from HTTP to HTTPS.