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2023-08-11gnu: openfoam-org: Use 'git-fetch'....So far the source was taken from an auto-generated, unstable tarball at github.com. This fixes that. * gnu/packages/simulation.scm (openfoam-org)[source]: Switch to 'git-fetch'. [arguments]: Add 'rename-self' phase. Ludovic Courtès
2023-08-10gnu: Add openfoam-com....* gnu/packages/simulation.scm (openfoam-com): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> reza
2023-08-10gnu: Add openfoam-org. Deprecate openfoam....* gnu/packages/patches/openfoam-4.1-cleanup.patch: Delete file. * gnu/local.mk: Remove it. * gnu/packages/simulation.scm (openfoam-org): New variable. (openfoam): Mark as deprecated. Signed-off-by: Ludovic Courtès <ludo@gnu.org> reza
2023-07-17gnu: simulation: Fix duplicate open-simulation-interface....Give the python variant a different name, and fix the build. * gnu/packages/simulation.scm (python-open-simulation-interface)[name]: Set. [propagated-inputs]: Add python-pyyaml and python-protobuf. Christopher Baines
2023-06-24gnu: fenics-dolfin, fenics: Remove input labels....* gnu/packages/simulation.scm (fenics-dolfin)[inputs, native-inputs] [propagated-inputs]: Remove labels. Replace CATCH2-1, which was actually unused, by CATCH-FRAMEWORK. [arguments]: Rewrite using gexps. Adjust 'set-paths' phase accordingly. (fenics): Likewise. Ludovic Courtès
2023-06-24gnu: fenics: Make sure 'jit.py' can find 'dolfin.pc'....* gnu/packages/simulation.scm (fenics)[inputs]: Move PYTHON-PKGCONFIG to... [propagated-inputs]: ... here. [arguments]: Add 'set-dolfin-pc-file-name' phase. Ludovic Courtès
2023-02-19gnu: Use HTTPS package home pages wherever possible....* gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS. * gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise. * gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]: Likewise. * gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise. * gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise. * gnu/packages/astronomy.scm (casacore, sextractor, libnova) (xplanet)[home-page]: Likewise. * gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao) (freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms) (libmodplug, libxmp, xmp, sox, drc, gsm, gnaural) (streamripper)[home-page]: Likewise. * gnu/packages/authentication.scm (pamtester)[home-page]: Likewise. * gnu/packages/backup.scm (grsync)[home-page]: Likewise. * gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma) (r-plgem)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1) (bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard) (java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools) (snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip) (libsbml)[home-page]: Likewise. * gnu/packages/build-tools.scm (tup)[home-page]: Likewise. * gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools) (cd-discid)[home-page]: Likewise. * gnu/packages/check.scm (cunit, python-nose) (python-pyhamcrest)[home-page]: Likewise. * gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise. * gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise. * gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise. * gnu/packages/compression.scm (p7zip)[home-page]: Likewise. * gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial) (r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook) (r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags) (r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm) (r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet) (r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde) (r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels) (r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom) (r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat) (r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]: Likewise. * gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13) (rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20) (rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20) (rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20) (rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise. * gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise. * gnu/packages/curl.scm (curlpp)[home-page]: Likewise. * gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger) (libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers) (soci)[home-page]: Likewise. * gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise. * gnu/packages/debug.scm (remake)[home-page]: Likewise. * gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise. * gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise. * gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise. * gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise. * gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise. * gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise. * gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise. * gnu/packages/electronics.scm (xoscope)[home-page]: Likewise. * gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu) (emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel) (emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc) (emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap) (emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+) (emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise. * gnu/packages/embedded.scm (sdcc)[home-page]: Likewise. * gnu/packages/engineering.scm (asco, libngspice, libspnav) (openctm)[home-page]: Likewise. * gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise. * gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]: Likewise. * gnu/packages/finance.scm (gbonds)[home-page]: Likewise. * gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]: Likewise. * gnu/packages/fltk.scm (ntk)[home-page]: Likewise. * gnu/packages/fonts.scm (font-terminus, font-tex-gyre) (font-comic-neue)[home-page]: Likewise. * gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]: Likewise. * gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave) (python-myhdl)[home-page]: Likewise. * gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise. * gnu/packages/ftp.scm (weex)[home-page]: Likewise. * gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc) (eureka, plib)[home-page]: Likewise. * gnu/packages/games.scm (abe, alex4, armagetronad, barony) (foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally) (cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki) (quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks) (flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise. * gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise. * gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise. * gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish) (workrave)[home-page]: Likewise. * gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise. * gnu/packages/graph.scm (mscgen)[home-page]: Likewise. * gnu/packages/graphics.scm (assimp, alembic, ctl, agg) (opencsg)[home-page]: Likewise. * gnu/packages/graphviz.scm (gts)[home-page]: Likewise. * gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise. * gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise. * gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise. * gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise. * gnu/packages/haskell-web.scm (ghc-http-client-restricted) (ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg) (ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats) (ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints) (ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon) (ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards) (ghc-template-haskell, ghc-boot-th, ghc-binary-orphans) (ghc-postgresql-simple)[home-page]: Likewise. * gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise. * gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise. * gnu/packages/image-processing.scm (mia)[home-page]: Likewise. * gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr) (qiv)[home-page]: Likewise. * gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib) (sng, mtpaint)[home-page]: Likewise. * gnu/packages/java-xml.scm (java-simple-xml, java-jaxp) (java-apache-xml-commons-resolver)[home-page]: Likewise. * gnu/packages/java.scm (java-cisd-base, java-cisd-args4j) (java-hamcrest-core, java-jsr305, java-eclipse-osgi) (java-eclipse-equinox-common, java-eclipse-core-jobs) (java-eclipse-equinox-registry, java-eclipse-equinox-app) (java-eclipse-equinox-preferences, java-eclipse-core-contenttype) (java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq) (java-cdi-api)[home-page]: Likewise. * gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise. * gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]: Likewise. * gnu/packages/kde-internet.scm (kget)[home-page]: Likewise. * gnu/packages/kde-systemtools.scm (dolphin-plugins) (konsole)[home-page]: Likewise. * gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise. * gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise. * gnu/packages/lego.scm (nqc)[home-page]: Likewise. * gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise. * gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise. * gnu/packages/libffi.scm (libffi)[home-page]: Likewise. * gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]: Likewise. * gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise. * gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools) (kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise. * gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser) (sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore) (sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell) (sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise. * gnu/packages/lisp.scm (lush2)[home-page]: Likewise. * gnu/packages/logging.scm (log4cpp)[home-page]: Likewise. * gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise. * gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]: Likewise. * gnu/packages/mail.scm (muchsync, procmail, sendmail) (opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise. * gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise. * gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh) (metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3) (frama-c)[home-page]: Likewise. * gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]: Likewise. * gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise. * gnu/packages/monitoring.scm (python-whisper, python-carbon) (hostscope)[home-page]: Likewise. * gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321) (lame)[home-page]: Likewise. * gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise. * gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol) (portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot) (schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2) (shiru-lv2)[home-page]: Likewise. * gnu/packages/ncurses.scm (stfl)[home-page]: Likewise. * gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird) (tunctl, traceroute)[home-page]: Likewise. * gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise. * gnu/packages/ntp.scm (openntpd)[home-page]: Likewise. * gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib) (ocaml-graph, cubicle)[home-page]: Likewise. * gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise. * gnu/packages/package-management.scm (xstow, modules)[home-page]: Likewise. * gnu/packages/parallel.scm (xjobs)[home-page]: Likewise. * gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]: Likewise. * gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]: Likewise. * gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]: Likewise. * gnu/packages/plan9.scm (drawterm)[home-page]: Likewise. * gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]: Likewise. * gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise. * gnu/packages/profiling.scm (otf2)[home-page]: Likewise. * gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise. * gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise. * gnu/packages/python-web.scm (python-cssutils) (python-translationstring)[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml) (python-docutils, python-pexpect, python-importlib-resources) (python-simplegeneric, python-urwid, python-xlrd, python-xlwt) (python-pyasn1, python-pythondialog, python-tftpy, python-random2) (python-arcp, python-pyopengl, python-sortedcollections) (python-sortedcontainers, python-yapsy, python-pydispatcher) (python-posix-ipc)[home-page]: Likewise. * gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise. * gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise. * gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise. * gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise. * gnu/packages/regex.scm (tre)[home-page]: Likewise. * gnu/packages/rsync.scm (librsync)[home-page]: Likewise. * gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox) (ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise. * gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise. * gnu/packages/screen.scm (dtach)[home-page]: Likewise. * gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise. * gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise. * gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise. * gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise. * gnu/packages/speech.scm (espeak)[home-page]: Likewise. * gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise. * gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice) (r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable) (python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm) (r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]: Likewise. * gnu/packages/swig.scm (swig)[home-page]: Likewise. * gnu/packages/task-management.scm (wtime)[home-page]: Likewise. * gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise. * gnu/packages/terminals.scm (libtermkey, mlterm, libvterm) (libvterm)[home-page]: Likewise. * gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs) (texlive-csplain, biber, texmaker)[home-page]: Likewise. * gnu/packages/text-editors.scm (joe)[home-page]: Likewise. * gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise. * gnu/packages/tv.scm (tvtime)[home-page]: Likewise. * gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise. * gnu/packages/upnp.scm (libupnp)[home-page]: Likewise. * gnu/packages/version-control.scm (cvs)[home-page]: Likewise. * gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib) (liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl) (dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise. * gnu/packages/virtualization.scm (bochs)[home-page]: Likewise. * gnu/packages/w3m.scm (w3m)[home-page]: Likewise. * gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi) (tidy-html, htmlcxx)[home-page]: Likewise. * gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise. * gnu/packages/wv.scm (wv)[home-page]: Likewise. * gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise. * gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise. * gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c) (opensp)[home-page]: Likewise. * gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise. Tobias Geerinckx-Rice
2023-02-12gnu: Add esmini....* gnu/packages/patches/esmini-no-clutter-log.patch: New file. * gnu/packages/patches/esmini-use-pkgconfig.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them here. * gnu/packages/simulation.scm (esmini): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Liliana Marie Prikler
2023-02-12gnu: Add python-open-simulation-interface....* gnu/packages/simulation.scm (python-open-simulation-interface): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Liliana Marie Prikler
2023-02-12gnu: Add open-simulation-interface....* gnu/packages/simulation.scm (open-simulation-interface): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Liliana Marie Prikler
2023-01-08gnu: Add python-commonroad-route-planner....* gnu/packages/simulation.scm (python-commonroad-route-planner): New variable. Liliana Marie Prikler
2023-01-08gnu: Add python-commonroad-io....* gnu/packages/simulation.scm (python-commonroad-io): New variable. Liliana Marie Prikler
2023-01-08gnu: Add python-commonroad-vehicle-models....* gnu/packages/simulation.scm (%commonroad-dont-install-license-at-root) (python-commonroad-vehicle-models): New variables. Liliana Marie Prikler
2022-10-27gnu: python-pygmsh: Use pyproject-build-system....* gnu/packages/simulation.scm (python-pygmsh)[build-system]: Switch to PYPROJECT-BUILD-SYSTEM. [arguments]: Remove redundant phases. [native-inputs]: Remove PYTHON-PYPA-BUILD. Marius Bakke
2022-10-24gnu: Add sumo....* gnu/packages/simulation.scm (sumo): New variable. Liliana Marie Prikler
2022-09-15gnu: catch-framework2: Rename variable to catch2....Automated with: git grep -l catch-framework2 | xargs sed 's/catch-framework2/catch2/g' -i Maxim Cournoyer
2022-08-03gnu: fenics: Do not mpirun tests....* gnu/packages/simulation.scm (fenics)[phases]: Do not use mpirun for tests and skip failing XDMF test. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ontje Lünsdorf
2022-06-07gnu: python-pygmsh: Update to 7.1.17....* gnu/packages/simulation.scm (python-pygmsh): Update to 7.1.17. [source]: Remove snippet and modules fields. [origin]: Prefix tag by "v". [phases]: Delete trailing #t. {workaround-gmsh-detection-failure}: New phase. {build, install}: New phase overrides. {check}: Honor tests and remove extraneous add-installed-pythonpath call. [native-inputs]: Remove wheel. Add python-pypa-build and python-flit-core. [propagated-inputs]: Remove python-importlib-metadata. Maxim Cournoyer
2022-05-23gnu: python-meshio: Update to 5.3.4....* gnu/packages/simulation.scm (python-meshio): Update to 5.3.4. [source]: Reindent. [propagated-inputs]: Add python-rich. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-23gnu: python-meshio: Honor #:tests? flag....* gnu/packages/simulation.scm (python-meshio)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. Remove unnecessary 'add-installed-pythonpath' call. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-23gnu: python-meshio: Remove trailing booleans....* gnu/packages/simulation.scm (python-meshio)[snippet]: Remove trailing boolean (and therefore the 'begin'). [arguments]: Remove trailing boolean. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-23gnu: python-meshio: Remove input labels....* gnu/packages/simulation.scm (python-meshio)[inputs, native-inputs, propagated-inputs]: Remove labels. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-06gnu: fenics: Fix sanity check....* gnu/packages/simulation.scm (fenics)[arguments]: Relax pybind11 requirement to appease the sanity check. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-06gnu: fenics: Honor #:tests? flag....* gnu/packages/simulation.scm (fenics)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-05-06gnu: fenics-dolfin: Honor #:tests? flag....* gnu/packages/simulation.scm (fenics-dolfin)[source]: Remove trailing boolean. [arguments]: Adjust custom 'check' phase to honor the #:tests? flag. While here, remove trailing booleans. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-02-05gnu: fenics-dolfin: Fix build....* gnu/packages/patches/fenics-dolfin-algorithm.patch, gnu/packages/patches/fenics-dolfin-boost.patch, gnu/packages/patches/fenics-dolfin-config-slepc.patch, gnu/packages/patches/fenics-dolfin-demo-init.patch: New patches. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/simulation.scm (fenics-dolfin)[source]: Use them. Eric Bavier
2021-12-13gnu: Simplify package inputs....This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès
2021-09-07Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-07-29Merge branch 'master' into core-updates-frozen... Conflicts: gnu/packages/bioinformatics.scm gnu/packages/cmake.scm gnu/packages/curl.scm gnu/packages/emacs-xyz.scm gnu/packages/gpodder.scm gnu/packages/music.scm gnu/packages/patches/glibc-bootstrap-system.patch gnu/packages/python-xyz.scm gnu/packages/shells.scm gnu/packages/statistics.scm Marius Bakke
2021-08-23gnu: python-pygmsh: Update to 7.1.11....*gnu/packages/simulation.scm (python-pygmsh): Update to 7.1.11. [source](snippet): Re-phrase comment. Paul Garlick
2021-08-13gnu: python-pygmesh: Update to 7.1.10....* gnu/packages/simulation.scm (python-pygmah): Update to 7.1.10. [arguments]<#:phases>: Tests have moved to the 'tests' directory. The test_readme.py file has been removed. Paul Garlick
2021-08-13gnu: python-pygmsh: Change source to 'git-fetch'....* gnu/packages/simulation.scm (python-pygmsh)[source]: Change to 'git-fetch'. Paul Garlick
2021-08-13gnu: python-pygmsh: Update snippet for Gmsh > 4.7.0....The old field option name is not needed after commit 78595fe3650057f258109c6599f4bae1d0e72e (Gmsh 4.8.4). * gnu/packages/simulation.scm (python-pygmsh)[source]: Remove option name substitution. Paul Garlick
2021-07-22gnu: Add python-dolfin-adjoint....* gnu/packages/simulation.scm (python-dolfin-adjoint): New variable. Paul Garlick
2021-07-18Merge branch 'master' into core-updatesLudovic Courtès
2021-07-12gnu: Add python-pygmsh....* gnu/packages/simulation.scm (python-pygmsh): New variable. Paul Garlick
2021-07-02gnu: Add python-meshio....* gnu/packages/simulation.scm (python-meshio): New variable. Paul Garlick
2021-03-24Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2021-03-17gnu: Use PACKAGE/INHERIT in more places....* gnu/packages/algebra.scm (fftwf, fftw-openmpi), gnu/packages/audio.scm (ztoolkit-rsvg), gnu/packages/bioinformatics.scm (python2-dendropy), gnu/packages/boost.scm (boost-with-python2), gnu/packages/check.scm (python2-mock, python2-pytest-mock), gnu/packages/cups.scm (hplip-minimal), gnu/packages/freedesktop.scm (libinput-minimal), gnu/packages/gettext.scm (gnu-gettext), gnu/packages/glib.scm (python2-pygobject), gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi), gnu/packages/groff.scm (groff-minimal), gnu/packages/jami.scm (ffmpeg-jami), gnu/packages/libcanberra.scm (libcanberra/gtk+-2), gnu/packages/lirc.scm (python2-lirc), gnu/packages/llvm.scm (clang-runtime-3.5), gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple), gnu/packages/node.scm (libnode), gnu/packages/onc-rpc.scm (libtirpc/hurd), gnu/packages/python-compression.scm (bitshuffle-for-snappy), gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography) (python2-cryptography, python2-m2crypto), gnu/packages/python-web.scm (python2-html2text, python2-tornado) (python2-terminado, python2-ndg-httpsclient, python2-websocket-client) (python2-rauth, python2-url, python2-s3transfer), gnu/packages/python-xyz.scm (python2-psutil, python2-serpent) (python2-humanfriendly, python2-empy, python2-parse-type, python2-polib) (python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc) (python2-ipyparallel, python2-traitlets, python2-dbus) (python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse) (python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal) (python2-contextlib2, python2-promise, python2-anyjson, python2-amqp) (python2-kombu, python2-billiard, python2-celery, python2-whoosh) (python2-jellyfish, python-rope, ptpython-2, python2-binaryornot) (python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort) (python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash) (python2-cloudpickle, python2-reparser), gnu/packages/python.scm (python2-called-python), gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt) (python-qscintilla, python-pyqt+qscintilla), gnu/packages/scanner.scm (sane-backends), gnu/packages/sdl.scm (guile3.0-sdl2), gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc) (python-sepolgen, policycoreutils), gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack), gnu/packages/simulation.scm (fenics), gnu/packages/statistics.scm (python2-statsmodels), gnu/packages/texinfo.scm (info-reader), gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1), gnu/packages/xml.scm (xmlsec-nss), gnu/packages/xorg.scm (uim-gtk, uim-qt), guix/build-system/python.scm (package-with-explicit-python) (strip-python2-variant): Use PACKAGE/INHERIT. Mark H Weaver
2021-02-01gnu: fenics: Do not alter PYTHONPATH....* gnu/packages/simulation.scm (fenics)[phases]: Delete trailing #t. [phases]{pre-check}: Do not alter PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-fenics-ffc: Do not alter PYTHONPATH....* gnu/packages/simulation.scm (python-fenics-ffc) [phases]{check}: Do not alter PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-fenics-ffc: Do not alter PYTHONPATH....* gnu/packages/simulation.scm (python-fenics-ffc) [phases]{check}: Do not alter PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-fenics-fiat: Do not alter PYTHONPATH....* gnu/packages/simulation.scm (python-fenics-fiat) [phases]{check}: Do not alter PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-fenics-ufl: Do not alter PYTHONPATH....* gnu/packages/simulation.scm (python-fenics-ufl) [phases]{check}: Do not alter PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-fenics-dijitso: Do not alter PYTHONPATH....* gnu/packages/simulation.scm (python-fenics-dijitso) [phases]{check}: Do not alter PYTHONPATH. Maxim Cournoyer
2020-11-20gnu: fenics: Reduce build time....* gnu/packages/simulation.scm (fenics)[phases]{check}: Don't run the test suite twice; run it once in parallel mode. Honor the number of jobs specified via --cores, capped to 3 for memory reasons. Do not check the demos. Maxim Cournoyer
2020-08-22gnu: Add fullswof-2d....* gnu/packages/simulation.scm (fullswof-2d): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Paul Garlick
2020-01-23Merge branch 'staging' into core-updatesMarius Bakke
2020-01-23gnu: fenics: Update to 2019.1.0.post0....* gnu/packages/simulation.scm (fenics): Update to 2019.1.0.post0. [arguments]: In the 'pre-check' phase, add three more demos to the list of demos that are skipped. Paul Garlick
2020-01-23gnu: fenics-dolfin: Update to 2019.1.0.post0....* gnu/packages/simulation.scm (fenics-dolfin): Update to 2019.1.0.post0. [source](snippet): Remove three substitutions that are no longer needed. [native-inputs]: Use compatible version of CATCH. [arguments]: Use CMAKE version 3.15.5 to avoid EXCLUDE_FROM_ALL regression. See <https://issues.guix.gnu.org/issue/38060>. Paul Garlick