| Age | Commit message (Expand) | Author |
|---|
| 2023-07-29 | gnu: python-pymc: Update to 5.6.1....* gnu/packages/statistics.scm (python-pymc): Update to 5.6.1.
| Vinicius Monego |
| 2023-07-29 | gnu: python-arviz: Update to 0.16.1....* gnu/packages/statistics.scm (python-arviz): Update to 0.16.1.
| Vinicius Monego |
| 2023-07-18 | gnu: Rationalize texlive-updmap.cfg and texlive-tiny inputs....TEXLIVE-UPDMAP.CFG and TEXLIVE-TINY should only be used as native inputs.
Also remove texlive packages already provided by them.
* doc/build.scm (pdf-manual):
* gnu/packages/algebra.scm (pari-gp):
* gnu/packages/bioinformatics.scm (discrover):
(phyml):
(velvet):
* gnu/packages/chemistry.scm (yaehmop):
* gnu/packages/chez.scm (stex-bootstrap):
(chez-web):
(chez-sockets):
* gnu/packages/cran.scm (r-prereg):
* gnu/packages/docbook.scm (dblatex):
* gnu/packages/emacs-xyz.scm (emacs-auctex):
* gnu/packages/engineering.scm (fastcap):
* gnu/packages/fsf.scm (book-faif):
* gnu/packages/graphviz.scm (dot2tex):
* gnu/packages/maths.scm (hypre):
* gnu/packages/ocaml.scm (unison):
(ocaml-bibtex2html):
* gnu/packages/plotutils.scm (asymptote):
* gnu/packages/python-xyz.scm (python-nbconvert):
(python-pypandoc):
* gnu/packages/radio.scm (gnuradio):
(libosmo-dsp):
* gnu/packages/statistics.scm (r-with-tests):
* gnu/packages/tex.scm (texlive-makecmds):
(texlive-innerscript):
(teximpatient):
(texlive-xkeyval): Remove texlive packages already provided by
TEXLIVE-UPDMAP.CFG. Don't add TEXLIVE-TINY or TEXLIVE-UPDMAP.CFG as inputs.
| Nicolas Goaziou |
| 2023-07-18 | gnu: Replace texlive-latex-base with texlive-latex-bin....Although `latex-base' is clearly defined on CTAN, it isn't a proper TeX Live
package. Since we're trying to follow as closely as possible this TeX
distribution, we replace the package with the closest one, which is
`texlive-latex-bin'. As a consequence, the #:TEXLIVE-LATEX-BASE argument
becomes #:TEXLIVE-LATEX-BIN?, emphasizing the fact that the meaningful values
for it are booleans.
* gnu/packages/graphviz.scm (dot2tex)[propagated-inputs]: Remove
TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN.
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Remove
TEXLIVE-LATEX-BASE, TEXLIVE-GRAPHICS, TEXLIVE-L3BACKEND. Use
TEXLIVE-UPDMAP.CFG.
* gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Remove
TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN.
* gnu/packages/tex.scm (texlive-latex-base): Deprecate variable.
(texlive-hyphen-complete):
(texlive-tex):
(texlive-latex):
(texlive-docstrip):
(texlive-unicode-data):
(texlive-hyphen-base):
(texlive-tex-ini-files):
(texlive-metafont):
(texlive-modes):
(texlive-knuth-lib):
(texlive-latex-fonts):
(texlive-etex):
(texlive-plain):
(texlive-kpathsea):
(texlive-latexconfig):
(texlive-latex-bin):
(texlive-l3kernel):
(texlive-l3backend):
(texlive-l3packages):
(texlive-luatex):
(texlive-luahbtex):
(texlive-babel):
(texlive-cyrillic):
(texlive-pdftex):
(texlive-cm)[arguments]: Replace #:TEXLIVE-LATEX-BASE with #:TEXLIVE-LATEX-BIN?.
(texlive-lm):
(texlive-lua-alt-getopt):
(texlive-luaotfload):
(texlive-graphics-def):
(texlive-graphics-cfg): Set #:TEXLIVE-LATEX-BIN? to #F.
(texlive-graphics):
(texlive-lualibs):
(texlive-firstaid):
(texlive-atveryend)[arguments]: Set #:TEXLIVE-LATEX-BIN? to #F.
[native-inputs]: Add TEXLIVE-DOCSTRIP, TEXLIVE-PDFTEX.
(texlive-updmap.cfg): Remove TEXLIVE-CM, TEXLIVE-GRAPHICS,
TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN.
(texlive-atbegshi)[arguments]: Set #:TEXLIVE-LATEX-BIN? to #F.
[native-inputs]: Add TEXLIVE-DOCSTRIP, TEXLIVE-PDFTEX.
[propagated-inputs]: Remove TEXLIVE-IFTEX, TEXLIVE-INFWARERR and
TEXLIVE-LTXCMDS.
(texlive-everyshi)[arguments]: Build package with a temporary "latex.fmt"
file.
(texlive-cyrillic): Set #:TEXLIVE-LATEX-BIN? to #T.
* guix/build-system/texlive.scm (default-texlive-latex-base): Rename to
TEXLIVE-LATEX-BIN.
(lower): Set default value for TEXLIVE-LATEX-BIN? to #TRUE.
* gnu/packages/statistics.scm (r-with-tests): Remove TEXLIVE-LATEX-BASE and
TEXLIVE-GRAPHICS.
* doc/guix.texi (Build Systems): Document #:TEXLIVE-LATEX-BIN? argument.
Remove reference to #:TEXLIVE-LATEX-BASE.
| Nicolas Goaziou |
| 2023-07-18 | gnu: Deprecate texlive-base in favor of texlive-scheme-basic....* gnu/packages/tex.scm (texlive-base): Deprecate variable.
(texlive-updmap.cfg): Use default packages from now deprecated TEXLIVE-BASE.
Also remove already implemented TODO.
* doc/build.scm (pdf-manual):
* gnu/packages/statistics.scm: Replace TEXLIVE-BASE with call to
TEXLIVE-UPDMAP.CFG.
* guix/profiles.scm (texlive-font-maps): Trigger TeX Live hook whenever
a texlive package is included in the manifest.
| Nicolas Goaziou |
| 2023-07-18 | gnu: texlive-jknappen: Deprecate package....* gnu/packages/tex.scm (texlive-jknappen): Deprecate variable.
(texlive-paralist):
(texlive-jadetex):
(texlive-xindy):
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-nbconvert): Use TEXLIVE-JKNAPLTX instead.
| Nicolas Goaziou |
| 2023-07-18 | gnu: texlive-latex-xkeyval -> texlive-xkeyval....* gnu/packages/tex.scm (texlive-xkeyval): New variable.
(texlive-latex-xkeyval): Deprecate variable.
(texlive-bidi):
(texlive-pstool):
(texlive-polyglossia):
(texlive-zref):
(texlive-standalone):
(texlive-todonotes):
(texlive-adjustbox):
(texlive-qrcode):
(texlive-breakurl):
* gnu/packages/graphviz.scm (dot2tex):
* gnu/packages/statistics.scm (r-with-tests): Use new name.
| Nicolas Goaziou |
| 2023-07-18 | gnu: texlive-fonts-ec -> texlive-ec....* gnu/packages/tex.scm (texlive-ec): New variable.
(texlive-fonts-ec): Deprecate variable.
(lyx):
(biber):
* gnu/packages/python-xyz.scm (python-pypandoc):
* gnu/packages/statistics.scm (r-with-tests):
* doc/build.scm (pdf-manual):
* gnu/packages/bioinformatics.scm (discrover):
(phyml):
(velvet):
* gnu/packages/chemistry.scm (yaehmop):
* gnu/packages/chez.scm (stex-bootstrap):
* gnu/packages/ocaml.scm (unison):
(ocaml-bibtex2html):
* gnu/packages/plotutils.scm (asymptote): Use new name.
| Nicolas Goaziou |
| 2023-07-18 | gnu: texlive-latex-upquote -> texlive-upquote....* gnu/packages/tex.scm (texlive-upquote): New variable.
(texlive-latex-upquote): Deprecate variable.
* gnu/packages/cran.scm (r-prereg):
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/sphinx.scm (python-sphinx):
* gnu/packages/statistics.scm (r-with-tests): Use new name.
| Nicolas Goaziou |
| 2023-07-17 | gnu: r-puniform: Update to 0.2.6....* gnu/packages/statistics.scm (r-puniform): Update to 0.2.6.
| Ricardo Wurmus |
| 2023-07-17 | gnu: r-clubsandwich: Update to 0.5.9....* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.9.
| Ricardo Wurmus |
| 2023-07-17 | gnu: r-matrixmodels: Update to 0.5-2....* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-2.
| Ricardo Wurmus |
| 2023-07-17 | gnu: r-deoptimr: Update to 1.1-0....* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-0.
| Ricardo Wurmus |
| 2023-07-17 | gnu: r-mgcv: Update to 1.9-0....* gnu/packages/statistics.scm (r-mgcv): Update to 1.9-0.
| Ricardo Wurmus |
| 2023-07-17 | gnu: r-openssl: Update to 2.1.0....* gnu/packages/statistics.scm (r-openssl): Update to 2.1.0.
[properties]: Add hint to keep openssl input.
[inputs]: Add zlib.
| Ricardo Wurmus |
| 2023-07-16 | gnu: r-with-tests: Update to 4.3.1....* gnu/packages/statistics.scm (r-with-tests): Update to 4.3.1.
| Ricardo Wurmus |
| 2023-07-16 | gnu: r-with-tests: Fix reference to grep....detectCores.R fails to return the number of cores when running R in a
container without grep.
Reported-by: Jonas Freimuth.
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Fix references to
grep and wc in detectCores.R.
[inputs]: Add grep.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-norm: Update to 1.0-11.1....* gnu/packages/statistics.scm (r-norm): Update to 1.0-11.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-logspline: Update to 2.1.20....* gnu/packages/statistics.scm (r-logspline): Update to 2.1.20.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-pbapply: Update to 1.7-2....* gnu/packages/statistics.scm (r-pbapply): Update to 1.7-2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-robust: Update to 0.7-2....* gnu/packages/statistics.scm (r-robust): Update to 0.7-2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-rrcov: Update to 1.7-4....* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-4.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-robustbase: Update to 0.99-0....* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-0.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-deoptimr: Update to 1.0-14....* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-14.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-mvtnorm: Update to 1.2-2....* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-rmarkdown: Update to 2.23....* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.23.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-rcpparmadillo: Update to 0.12.4.1.0....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.4.1.0.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-rstudioapi: Update to 0.15.0....* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.15.0.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-xml2: Update to 1.3.5....* gnu/packages/statistics.scm (r-xml2): Update to 1.3.5.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-locfit: Update to 1.5-9.8....* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.8.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-dbplyr: Update to 2.3.3....* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.3.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-testthat: Update to 3.1.10....* gnu/packages/statistics.scm (r-testthat): Update to 3.1.10.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-matrix: Update to 1.6-0....* gnu/packages/statistics.scm (r-matrix): Update to 1.6-0.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-kernsmooth: Update to 2.23-22....* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-22.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-lme4: Update to 1.1-34....* gnu/packages/statistics.scm (r-lme4): Update to 1.1-34.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-digest: Update to 0.6.33....* gnu/packages/statistics.scm (r-digest): Update to 0.6.33.
[native-inputs]: Add r-simplermarkdown.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-plotly: Update to 4.10.2....* gnu/packages/statistics.scm (r-plotly): Update to 4.10.2.
| Ricardo Wurmus |
| 2023-07-07 | gnu: python-statsmodels: Update to 0.14.0....* gnu/packages/statistics.scm (python-statsmodels): Update to 0.14.0.
[source]: Simplify snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Remove trailing #T from build phase.
[propagated-inputs]: Add python-packaging; remove python-matplotlib.
[native-inputs]: Add python-colorama, python-flake8, python-isort,
python-joblib, python-matplotlib, python-pytest, python-pytest-randomly,
python-pytest-xdist, and python-setuptools-scm; remove python-nose and
python-sphinx.
| Ricardo Wurmus |
| 2023-06-25 | gnu: Add python-pymc....* gnu/packages/statistics.scm (python-pymc): New variable.
| Vinicius Monego |
| 2023-06-25 | gnu: Add python-arviz....* gnu/packages/statistics.scm (python-arviz): New variable.
| Vinicius Monego |
| 2023-06-25 | gnu: Add python-altair....* gnu/packages/statistics.scm (python-altair): New variable.
| Vinicius Monego |
| 2023-06-25 | gnu: Add python-vega-datasets....* gnu/packages/statistics.scm (python-vega-datasets): New variable.
* gnu/packages/patches/python-vega-datasets-remove-la-riots-code.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.
| Vinicius Monego |
| 2023-06-03 | gnu: r-biased-urn: Update to 2.0.10....* gnu/packages/statistics.scm (r-biased-urn): Update to 2.0.10.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-matrixstats: Update to 1.0.0....* gnu/packages/statistics.scm (r-matrixstats): Update to 1.0.0.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-mvtnorm: Update to 1.2-0....* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-0.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-rmarkdown: Update to 2.22....* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.22.
[properties]: Add hints to the updater.
| Ricardo Wurmus |
| 2023-05-31 | gnu: r-desctools: Update to 0.99.49....* gnu/packages/statistics.scm (r-desctools): Update to 0.99.49.
[propagated-inputs]: Add r-withr.
| Ricardo Wurmus |
| 2023-05-31 | gnu: r-rrcov: Update to 1.7-3....* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-3.
| Ricardo Wurmus |
| 2023-05-31 | gnu: r-rcpparmadillo: Update to 0.12.4.0.0....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.4.0.0.
| Ricardo Wurmus |
| 2023-05-31 | gnu: r-knitr: Update to 1.43....* gnu/packages/statistics.scm (r-knitr): Update to 1.43.
| Ricardo Wurmus |
