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2019-06-17gnu: python-flask-script: Fix tests....* gnu/packages/python-web.scm (python-flask-script)[arguments]<#:phases>[patch-tests]: New phase. Danny Milosavljevic
2019-06-17gnu: python-scikit-learn: Update to 0.20.3....* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.3. Ricardo Wurmus
2019-06-17gnu: Add tbsp....* gnu/packages/bioinformatics.scm (tbsp): New variable. Ricardo Wurmus
2019-06-17gnu: Add rw....* gnu/packages/graph.scm (rw): New variable. Andreas Enge
2019-06-17gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module....* gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here... * gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here. Andreas Enge
2019-06-17gnu: Fix freeorion build....* gnu/packages/games.scm (freeorion)[arguments]: Fix font unbundling. Nicolas Goaziou
2019-06-17gnu: Add edge-addition-planarity-suite....* gnu/packages/maths.scm (edge-addition-planarity-suite): New variable. Andreas Enge
2019-06-17gnu: python-cypari2: Update to 2.1.1....* gnu/packages/sagemath.scm (python-cypari2): Update to 2.1.1. Andreas Enge
2019-06-17gnu: Add cliquer....* gnu/packages/sagemath.scm (cliquer): New variable. Andreas Enge
2019-06-17gnu: busybox: Don't install to usr....* gnu/packages/busybox.scm (busybox)[arguments]: Add a custom phase to prevent installing to %PREFIX/usr. Efraim Flashner
2019-06-17gnu: waybar: Add optional dependencies....* gnu/packages/wm.scm(waybar)[inputs]: Add libdbusmenu, libnl, libmpdclient and pulseaudio. Gábor Boskovits
2019-06-17gnu: python-scipy: Update to 1.2.2....* gnu/packages/python-xyz.scm (python-scipy): Update to 1.2.2. Ricardo Wurmus
2019-06-17gnu: oil-shell: Update to 0.6pre22....It turns out the currently packaged release fails to build for me. According to upstream, the 0.6 pre-releases are preferable to currently packaged 0.5. gnu/packages/shells.scm (oil-shell): Update to 0.6pre22. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Robert Vollmert
2019-06-17gnu: kakoune: Remove dependency on boost....kakoune builds without boost since a while already. * gnu/packages/text-editors.scm (kakoune)[inputs]: Remove boost. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Robert Vollmert
2019-06-17gnu: open-zwave: Unbundle hidapi....* gnu/packages/patches/open-zwave-hidapi.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/zwave.scm (open-zwave)[source](patches): New field. (snippet): Delete 'cpp/hidapi'. [native-inputs]: Add PKG-CONFIG. [inputs]: Add HIDAPI. Ludovic Courtès
2019-06-17gnu: gap: Update to 4.10.1....* gnu/packages/algebra.scm (gap): Update to 4.10.1. Install headers and library files by hand, since the make targets have disappeared. Delete the special check phase, since the "make check" target has appeared. Remove a package that is no longer recommended, and enable two recommended packages with clarified licenses. Andreas Enge
2019-06-17gnu: cmst: Don't install files to usr....* gnu/packages/connman.scm (cmst)[arguments]: Move custom 'fix-Makefiles phase before 'build. Add more substitutions. Efraim Flashner
2019-06-17gnu: cava: Don't install files to usr....* gnu/packages/audio.scm (cava)[arguments]: In configure-flags change FONT_DIR to not use 'usr'. Efraim Flashner
2019-06-17gnu: toybox: Don't install files to usr....* gnu/packages/busybox.scm (toybox)[arguments]: Add custom phase to remove any files installed in $PREFIX/usr. Efraim Flashner
2019-06-17gnu: xpra: Update to 2.5.2....* gnu/packages/xorg.scm (xpra): Update to 2.5.2. Rutger Helling
2019-06-16gnu: Add emacs-extend-smime....* gnu/packages/emacs-xyz.scm (emacs-extend-smime): New variable. Chris Marusich
2019-06-16gnu: Upgrade emacs-default-encrypt to 4.4....* gnu/packages/emacs-xyz.scm (emacs-default-encrypt) <version>: Upgrade to 4.4. <sha256>: Update accordingly. <uri, home-page>: Honor changes to upstream's website. Chris Marusich
2019-06-17gnu: r-rhisat2: Update to 1.0.3....* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.3. Ricardo Wurmus
2019-06-17gnu: r-seurat: Update to 3.0.2....* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.2. Ricardo Wurmus
2019-06-17gnu: r-tximport: Update to 1.12.1....* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.1. Ricardo Wurmus
2019-06-17gnu: r-systempiper: Update to 1.18.1....* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.1. Ricardo Wurmus
2019-06-17gnu: r-r-utils: Update to 2.9.0....* gnu/packages/statistics.scm (r-r-utils): Update to 2.9.0. Ricardo Wurmus
2019-06-17gnu: r-dt: Update to 0.7....* gnu/packages/statistics.scm (r-dt): Update to 0.7. Ricardo Wurmus
2019-06-17gnu: r-rcpparmadillo: Update to 0.9.500.2.0....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.500.2.0. Ricardo Wurmus
2019-06-17gnu: r-mime: Update to 0.7....* gnu/packages/statistics.scm (r-mime): Update to 0.7. Ricardo Wurmus
2019-06-17gnu: r-formatr: Update to 1.7....* gnu/packages/statistics.scm (r-formatr): Update to 1.7. Ricardo Wurmus
2019-06-17gnu: r-ggplot2: Update to 3.2.0....* gnu/packages/statistics.scm (r-ggplot2): Update to 3.2.0. [propagated-inputs]: Remove r-plyr. Ricardo Wurmus
2019-06-17gnu: r-servr: Update to 0.14....* gnu/packages/cran.scm (r-servr): Update to 0.14. Ricardo Wurmus
2019-06-17gnu: r-polspline: Update to 1.1.15....* gnu/packages/cran.scm (r-polspline): Update to 1.1.15. Ricardo Wurmus
2019-06-17gnu: r-deldir: Update to 0.1-21....* gnu/packages/cran.scm (r-deldir): Update to 0.1-21. Ricardo Wurmus
2019-06-17gnu: r-nor1mix: Update to 1.3-0....* gnu/packages/cran.scm (r-nor1mix): Update to 1.3-0. Ricardo Wurmus
2019-06-17gnu: r-tractor-base: Update to 3.3.2....* gnu/packages/cran.scm (r-tractor-base): Update to 3.3.2. Ricardo Wurmus
2019-06-17gnu: r-rspectra: Update to 0.15-0....* gnu/packages/cran.scm (r-rspectra): Update to 0.15-0. Ricardo Wurmus
2019-06-17gnu: r-emmeans: Update to 1.3.5....* gnu/packages/cran.scm (r-emmeans): Update to 1.3.5. Ricardo Wurmus
2019-06-17gnu: r-abcrf: Update to 1.8....* gnu/packages/cran.scm (r-abcrf): Update to 1.8. [propagated-inputs]: Add r-doparallel and r-foreach. Ricardo Wurmus
2019-06-17gnu: r-sjmisc: Update to 2.8.0....* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.0. [propagated-inputs]: Remove r-haven; add r-insight. Ricardo Wurmus
2019-06-17gnu: r-extradistr: Update to 1.8.11....* gnu/packages/cran.scm (r-extradistr): Update to 1.8.11. Ricardo Wurmus
2019-06-17gnu: guile-gi: Update to 0.0.2....* gnu/packages/guile-xyz.scm (guile-gi): Update to 0.0.2. [source]: Fetch using url-fetch. [arguments]: Add make flags to remove unexpectedly passing test from XFAIL_TESTS. [native-inputs]: Remove autoconf, automake, and texinfo. Ricardo Wurmus
2019-06-17gnu: guile-picture-language: Update to 0.0.1-1-91d10c9....* gnu/packages/guile-xyz.scm (guile-picture-language): Update to 0.0.1-1-91d10c9. [build-system]: Use gnu-build-system. [native-inputs]: Add autoconf, automake, imagemagick, pkg-config, and texinfo. Ricardo Wurmus
2019-06-17gnu: youtube-viewer: Refer to youtube-dl....* gnu/packages/video.scm (youtube-viewer)[inputs]: Add youtube-dl. [arguments]: Add ‘refer-to-inputs’ phase. Tobias Geerinckx-Rice
2019-06-17gnu: radare2: Download over HTTPS....* gnu/packages/engineering.scm (radare2)[source]: Use HTTPS. Tobias Geerinckx-Rice
2019-06-17gnu: radare2: Don't use NAME in source URI....* gnu/packages/engineering.scm (radare2)[source]: Hard-code NAME. Tobias Geerinckx-Rice
2019-06-17gnu: nsd: Update to 4.2.0....* gnu/packages/dns.scm (nsd): Update to 4.2.0. Tobias Geerinckx-Rice
2019-06-17gnu: knot: Update to 2.8.2....* gnu/packages/dns.scm (knot): Update to 2.8.2. Tobias Geerinckx-Rice
2019-06-17gnu: suil: Update to 0.10.4....* gnu/packages/audio.scm (suil): Update to 0.10.4. Tobias Geerinckx-Rice
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