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2016-08-08gnu: Add roary....* gnu/packages/bioinformatics.scm (roary): New variable. Ben Woodcroft
2016-08-08gnu: Add raxml....* gnu/packages/bioinformatics.scm (raxml): New variable. Ben Woodcroft
2016-08-08gnu: Add prank....* gnu/packages/bioinformatics.scm (prank): New variable. Ben Woodcroft
2016-08-08gnu: Add exonerate....* gnu/packages/bioinformatics.scm (exonerate): New variable. Ben Woodcroft
2016-08-08gnu: Add bppsuite....* gnu/packages/bioinformatics.scm (bppsuite): New variable. Ben Woodcroft
2016-08-08gnu: Add bpp-popgen....* gnu/packages/bioinformatics.scm (bpp-popgen): New variable. Ben Woodcroft
2016-08-08gnu: Add bpp-phyl....* gnu/packages/bioinformatics.scm (bpp-phyl): New variable. Ben Woodcroft
2016-08-08gnu: Add bpp-seq....* gnu/packages/bioinformatics.scm (bpp-seq): New variable. Ben Woodcroft
2016-08-08gnu: Add bpp-core....* gnu/packages/bioinformatics.scm (bpp-core): New variable. Ben Woodcroft
2016-08-08gnu: Add mcl....* gnu/packages/machine-learning.scm (mcl): New variable. Ben Woodcroft
2016-08-08gnu: Add perl-env-path....* gnu/packages/perl.scm (perl-env-path): New variable. Ben Woodcroft
2016-08-08gnu: Add perl-test-files....* gnu/packages/perl.scm (perl-test-files): New variable. Ben Woodcroft
2016-08-08gnu: Add perl-array-utils....* gnu/packages/perl.scm (perl-array-utils): New variable. Ben Woodcroft
2016-08-08gnu: Add perl-file-grep....* gnu/packages/perl.scm (perl-file-grep): New variable. Ben Woodcroft
2016-08-08gnu: Add perl-file-path....* gnu/packages/perl.scm (perl-file-path): New variable. Ben Woodcroft
2016-08-08gnu: Add perl-file-slurper....* gnu/packages/perl.scm (perl-file-slurper): New variable. Ben Woodcroft
2016-08-08gnu: Add perl-graph-readwrite....* gnu/packages/xml.scm (perl-graph-readwrite): New variable. Ben Woodcroft
2016-08-08gnu: Add perl-graph....* gnu/packages/perl.scm (perl-graph): New variable. Ben Woodcroft
2016-08-08gnu: Add perl-parse-yapp....* gnu/packages/perl.scm (perl-parse-yapp): New variable. Ben Woodcroft
2016-08-08gnu: Add perl-xml-writer....* gnu/packages/perl.scm (perl-xml-writer): New variable. Ben Woodcroft
2016-08-08gnu: parallel: Use full paths for executables....* gnu/packages/parallel.scm (parallel)[inputs]: Add procps. [arguments]: New field. Ben Woodcroft
2016-08-07gnu: offlineimap: Update to 7.0.4....* gnu/packages/mail.scm (offlineimap): Update to 7.0.4. Efraim Flashner
2016-08-07gnu: Add ii....* gnu/packages/irc.scm (ii): New variable. Signed-off-by: Alex Kost <alezost@gmail.com> ng0
2016-08-07gnu: zathura-pdf-poppler: Update to 0.2.6....* gnu/packages/pdf.scm (zathura-pdf-poppler): Update to 0.2.6. Signed-off-by: Alex Kost <alezost@gmail.com> ng0
2016-08-07gnu: zathura-djvu: Update to 0.2.5....* gnu/packages/pdf.scm (zathura-djvu): Update to 0.2.5. Signed-off-by: Alex Kost <alezost@gmail.com> ng0
2016-08-07gnu: zathura-ps: Update to 0.2.3....* gnu/packages/pdf.scm (zathura-ps): Update to 0.2.3. Signed-off-by: Alex Kost <alezost@gmail.com> ng0
2016-08-07gnu: zathura-cb: Update to 0.1.5....* gnu/packages/pdf.scm (zathura-cb): Update to 0.1.5. Signed-off-by: Alex Kost <alezost@gmail.com> ng0
2016-08-07gnu: zathura: Update to 0.3.6....* gnu/packages/pdf.scm (zathura): Update to 0.3.6. Signed-off-by: Alex Kost <alezost@gmail.com> ng0
2016-08-07gnu: girara: Update to 0.2.6....* gnu/packages/gtk.scm (girara): Update to 0.2.6. Signed-off-by: Alex Kost <alezost@gmail.com> ng0
2016-08-06gnu: Add python-pythondialog....* gnu/packages/python.scm (python-pythondialog): New variable. (python2-pythondialog): Inherit from PYTHON-PYTHONDIALOG. Co-authored-by: Vincent Legoll <vincent.legoll@idgrilles.fr> Leo Famulari
2016-08-06gnu: Add bs1770gain....* gnu/packages/video.scm (bs1770gain): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Alex Griffin
2016-08-06gnu: ruby-cucumber-core: Update to 1.5.0....* gnu/packages/ruby.scm (ruby-cucumber-core): Update to 1.5.0. Ben Woodcroft
2016-08-06gnu: Add python-biom-format....* gnu/packages/bioinformatics.scm (python-biom-format, python2-biom-format): New variables. Ben Woodcroft
2016-08-06gnu: Add python-future....* gnu/packages/python.scm (python-future, python2-future): New variables. Ben Woodcroft
2016-08-05gnu: icedtea-8: Update to 3.1.0....Fixes CVE-2016-{3458,3485,3500,3508,3550,3587,3606,3598,3610}. * gnu/packages/java.scm (icedtea-8): Update to 3.1.0. [native-inputs]: Add SHENANDOAH-DROP. Leo Famulari
2016-08-05gnu: icedtea-7: Update to 2.6.7....Fixes CVE-2016-{3458,3485,3500,3508,3550,3598,3606,3610}. * gnu/packages/java.scm (icedtea-7): Update to 2.6.7. Leo Famulari
2016-08-05gnu: spice-vdagent: Set Exec path in spice-vdagent.desktop....* gnu/packages/spice.scm (spice-vdagent): Set Exec path in spice-vdagent.desktop. David Craven
2016-08-05gnu: qemu: Enable spice support....* gnu/packages/qemu.scm (qemu)[inputs]: Add SPICE and VIRGLRENDERER. (qemu-minimal)[inputs]: Remove SPICE and VIRGLRENDERER. David Craven
2016-08-05gnu: qemu: Reorder inputs alphabetically....* gnu/packages/qemu.scm (qemu): Reorder inputs alphabetically. David Craven
2016-08-05gnu: tor: Update to 0.2.8.6....* gnu/packages/tor.scm (tor): Update to 0.2.8.6. Signed-off-by: Andreas Enge <andreas@enge.fr> ng0
2016-08-05gnu: qjson: Remove package....* gnu/packages/qt.scm (qjson): Delete variable. Andreas Enge
2016-08-05gnu: Add ircii....* gnu/packages/irc.scm (ircii): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2016-08-05gnu: Add guile-commonmark...* gnu/packages/guile.scm (guile-commonmark): New variable. Erik Edrosa
2016-08-04gnu: tuxguitar: Update to 1.3.2....* gnu/packages/music.scm (tuxguitar): Update to 1.3.2. [arguments]: Use ant-build-system and rearrange build phases. [native-inputs]: Remove field. Ricardo Wurmus
2016-08-04gnu: gcc: Reintroduce dependency on Texinfo....This partly reverts 868c13c53a9788f8f27e77d8c8f99df14be512ba, which introduced a regression whereby gcc@5 and gcc@6 would no longer contain their Info manual. * gnu/packages/gcc.scm (gcc-5)[native-inputs]: Remove. Ludovic Courtès
2016-08-04gnu: curl: Replace with 7.50.1 [fixes CVE-2016-{3739,4802,5419,5420,5421]....* gnu/packages/curl.scm (curl)[replacement]: New field. (curl-7.50.1): New variable. Leo Famulari
2016-08-04gnu: zsh: Move to shells.scm....* gnu/packages/zsh.scm (zsh): Move from here ... * gnu/packages/shells.scm (zsh): ... to here. * gnu/packages/zsh.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove zsh.scm. Tobias Geerinckx-Rice
2016-08-04Merge branch 'core-updates'Mark H Weaver
2016-08-04Revert "Merge branch 'core-updates'"...This reverts commit 455859a50f88f625d13fc2f304111f02369b366b. Mark H Weaver
2016-08-04Revert "gnu: zsh: Move to shells.scm."...This reverts commit 12b63ab505f781e49b6e7dda2d9eca0aaf24eaf1. Mark H Weaver
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