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2021-05-04gnu: Exim: Update to 4.94.2 [security fixes]....Fixes CVE-2020-{27216,28007,28008,28009,28010,28011,28012,28013,28014,28015, 28016,28017,28018,28019,28020,28021,28022,28023,28024,28025,28026}. See the upstream security advisory for more information: https://exim.org/static/doc/security/CVE-2020-qualys/21nails.txt * gnu/packages/mail.scm (exim): Update to 4.94.2. Leo Famulari
2021-05-04gnu: s6-linux-init: Update to 1.0.6.3....* gnu/packages/skarnet.scm (s6-linux-init): Update to 1.0.6.3. Tobias Geerinckx-Rice
2021-05-04gnu: ethtool: Update to 5.12....* gnu/packages/networking.scm (ethtool): Update to 5.12. Tobias Geerinckx-Rice
2021-05-04gnu: gthumb: Update to 3.10.3....* gnu/packages/gnome.scm (gthumb): Update to 3.10.3. Tobias Geerinckx-Rice
2021-05-04gnu: libhandy: Update to 1.2.2....* gnu/packages/gnome.scm (libhandy): Update to 1.2.2. Tobias Geerinckx-Rice
2021-05-04gnu: busybox: Update to 1.33.1....* gnu/packages/busybox.scm (busybox): Update to 1.33.1. [source]: Remove upstreamed patch. * gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-05-04gnu: indi: Stop returning #t from phases....* gnu/packages/astronomy.scm (indi)[arguments]: Remove #t phase return values. Tobias Geerinckx-Rice
2021-05-04gnu: indi: Respect #:tests?....* gnu/packages/astronomy.scm (indi)[arguments]: Respect #:tests? in the 'check phase. Tobias Geerinckx-Rice
2021-05-04gnu: indi: Check slightly more functionally....* gnu/packages/astronomy.scm (indi)[arguments]: Substitute WITH-DIRECTORY-EXCURSION for double CHDIR. Tobias Geerinckx-Rice
2021-05-04gnu: indi: Update to 1.9.0....* gnu/packages/astronomy.scm (indi): Update to 1.9.0. Tobias Geerinckx-Rice
2021-05-04gnu: bcachefs-tools: Prepare for cross-compilation....* gnu/packages/file-systems.scm (bcachefs-tools)[arguments]: Use CC-FOR-TARGET and PKG-CONFIG-FOR-TARGET. Tobias Geerinckx-Rice
2021-05-04gnu: bcachefs-tools: Update to 0.1-6.a14d39d....* gnu/packages/file-systems.scm (bcachefs-tools): Update to 0.1-6.a14d39d. Tobias Geerinckx-Rice
2021-05-04gnu: bitcoin-core@0.21: Update to 0.21.1....* gnu/packages/finance.scm (bitcoin-core-0.21): Update to 0.21.1. Tobias Geerinckx-Rice
2021-05-04gnu: Add r-guitar....* gnu/packages/bioconductor.scm (r-guitar): New variable. Ricardo Wurmus
2021-05-04gnu: python-nbconvert: Simplify build phase....* gnu/packages/python-xyz.scm (python-nbconvert)[arguments]: Simplify build phase "fix-paths-and-tests" by using WHICH; remove final boolean and reindent. Ricardo Wurmus
2021-05-04gnu: python-nbconvert: Use modular texlive packages....* gnu/packages/python-xyz.scm (python-nbconvert)[inputs]: Remove texlive. [native-inputs]: Add texlive-union. Ricardo Wurmus
2021-05-04gnu: Add texlive-eurosym....* gnu/packages/tex.scm (texlive-eurosym): New variable. Ricardo Wurmus
2021-05-04gnu: Add texlive-tcolorbox....* gnu/packages/tex.scm (texlive-tcolorbox): New variable. Ricardo Wurmus
2021-05-04gnu: Add texlive-adjustbox....* gnu/packages/tex.scm (texlive-adjustbox): New variable. Ricardo Wurmus
2021-05-04gnu: Add texlive-collectbox....* gnu/packages/tex.scm (texlive-collectbox): New variable. Ricardo Wurmus
2021-05-04gnu: Add texlive-storebox....* gnu/packages/tex.scm (texlive-storebox): New variable. Ricardo Wurmus
2021-05-04gnu: Add texlive-ifoddpage....* gnu/packages/tex.scm (texlive-ifoddpage): New variable. Ricardo Wurmus
2021-05-04gnu: Add texlive-titling....* gnu/packages/tex.scm (texlive-titling): New variable. Ricardo Wurmus
2021-05-04gnu: sbcl-trivial-backtrace: Move lift to native-inputs....* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace)[inputs]: Move lift to... [native-inputs]: ... here. Guillaume Le Vaillant
2021-05-04gnu: sbcl-trivial-backtrace: Update to 1.1.0-1.6eb65bd...* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace): Update to 1.1.0-1.6eb65bd. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Sharlatan Hellseher
2021-05-04gnu: sbcl-static-dispatch: Update to 0.5....* gnu/packages/lisp-xyz.scm (sbcl-static-dispatch): Update to 0.5. [version]: Use annotated tag of the latest release in upstream. [native-inputs]: Remove prove, add fiveam. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Sharlatan Hellseher
2021-05-04gnu: sbcl-cl-environments: Update to 0.4....* gnu/package/lisp-xyz.scm (sbcl-cl-environments): Update to 0.4. [version]: Use annotated tag instead of direct commit, there are upstream releases available now. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Sharlatan Hellseher
2021-05-04gnu: r-summarizedexperiment: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Move variable from here... * gnu/packages/bioconductor.scm (r-summarizedexperiment): ...to here. Ricardo Wurmus
2021-05-04gnu: r-mixomics: Update to 6.14.1....* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.1. [propagated-inputs]: Add r-biocparallel. Ricardo Wurmus
2021-05-04gnu: r-catalyst: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.14.1. Ricardo Wurmus
2021-05-04gnu: r-scran: Update to 1.18.7....* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.7. Ricardo Wurmus
2021-05-04gnu: r-biocpkgtools: Update to 1.8.2....* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.2. Ricardo Wurmus
2021-05-04gnu: r-experimenthub: Update to 1.16.1....* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.1. Ricardo Wurmus
2021-05-04gnu: r-bioassayr: Update to 1.28.3....* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.3. Ricardo Wurmus
2021-05-04gnu: r-universalmotif: Update to 1.8.5....* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.5. Ricardo Wurmus
2021-05-04gnu: r-icobra: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.1. Ricardo Wurmus
2021-05-04gnu: r-interactionset: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.1. Ricardo Wurmus
2021-05-04gnu: r-systempiper: Update to 1.24.6....* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.24.6. Ricardo Wurmus
2021-05-04gnu: r-genomeinfodb: Update to 1.26.7....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.7. Ricardo Wurmus
2021-05-04gnu: r-biocgenerics: Update to 0.36.1....* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.1. Ricardo Wurmus
2021-05-04gnu: r-ensembldb: Update to 2.14.1....* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.14.1. Ricardo Wurmus
2021-05-04gnu: r-gage: Update to 2.40.2....* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.2. Ricardo Wurmus
2021-05-04gnu: r-annotationhub: Update to 2.22.1....* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.22.1. Ricardo Wurmus
2021-05-04gnu: r-future-apply: Set HOME directory variable....* gnu/packages/cran.scm (r-future-apply)[arguments]: Add phase "set-HOME". Ricardo Wurmus
2021-05-04gnu: r-matrixstats: Set HOME directory variable....* gnu/packages/statistics.scm (r-matrixstats)[arguments]: Add phase "set-HOME". Ricardo Wurmus
2021-05-04gnu: sequoia: Update to 1.1.0....* gnu/packages/sequoia.scm (sequoia): Update to 1.1.0. [arguments]: Remove phase "package", add phases "fix-rand-dependency" and "fix-permissions". Hartmut Goebel
2021-05-04gnu: r-pcapp: Update to 1.9-74....* gnu/packages/statistics.scm (r-pcapp): Update to 1.9-74. Ricardo Wurmus
2021-05-04gnu: r-sfsmisc: Update to 1.1-11....* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-11. Ricardo Wurmus
2021-05-04gnu: r-tidyselect: Update to 1.1.1....* gnu/packages/statistics.scm (r-tidyselect): Update to 1.1.1. Ricardo Wurmus
2021-05-04gnu: r-viridislite: Update to 0.4.0....* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.0. Ricardo Wurmus
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