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2019-05-06gnu: Add git-annex-remote-rclone....* gnu/packages/version-control.scm (git-annex-remote-rclone): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alex Griffin
2019-05-06gnu: quickswitch-i3: Fix license field to use license:wtfpl2....* gnu/packages/wm.scm (quickswitch-i3): Fix license field to use license:wtfpl2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brendan Tildesley
2019-05-06gnu: tmux-themepack: Fix license field to refer to license:wtfpl2....* gnu/packages/tmux.scm (tmux-themepack): Fix license field to refer to license:wtfpl2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brendan Tildesley
2019-05-06gnu: Use license: prefix in tmux.scm....* gnu/packages/tmux.scm Use license: prefix in tmux.scm. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brendan Tildesley
2019-05-06gnu: python-pyyaml: Fix license field to refer to license:wtfpl2....* gnu/packages/python-xyz.scm (python-pyyaml): Fix license field to refer to license:wtfpl2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brendan Tildesley
2019-05-06gnu: envstore: Fix license field to refer to license:wtfpl2....* gnu/packages/shellutils.scm (envstore): Fix license field to refer to license:wtfpl2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brendan Tildesley
2019-05-06gnu: Use license: prefix in shellutils.scm....* gnu/packages/shellutils.scm Use license: prefix in all packages. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brendan Tildesley
2019-05-06gnu: zimg: Fix license field to refer to license:wtfpl2....* gnu/packages/image.scm (zimg): Fix license field to refer to license:wtfpl2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brendan Tildesley
2019-05-06gnu: gcc@9: Fix limits.h include for cross builds....This allows us to supply gcc-9 as an optional argument to cross-gcc, successfully constructing gcc-9-based cross-compilers. * gnu/packages/gcc.scm (gcc-9)[source](patches): Add "gcc-9-asan-fix-limits-include.patch". * gnu/packages/patches/gcc-9-asan-fix-limits-include.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Carl Dong
2019-05-06gnu: cross-base: Apply gcc 8 patch to gcc >= 8....* gnu/packages/cross-base.scm (cross-gcc): Apply gcc 8 patch to gcc >= 8. * gnu/packages/patches/gcc-8-cross-environment-variables.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Carl Dong
2019-05-06gnu: gcc: Add 9.1.0....* gnu/packages/gcc.scm (gcc-9): New variable. * gnu/packages/commencement.scm (gcc-toolchain-9): New variable. * gnu/packages/patches/gcc-9-strmov-store-file-names.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Carl Dong
2019-05-06gnu: linux-libre: Update to 5.0.13....* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.13. (%linux-libre-hash): Update hash. Mark H Weaver
2019-05-06gnu: linux-libre@4.19: Update to 4.19.40....* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.40. (%linux-libre-4.19-hash): Update hash. Mark H Weaver
2019-05-06gnu: linux-libre@4.14: Update to 4.14.116....* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.116. (%linux-libre-4.14-hash): Update hash. Mark H Weaver
2019-05-06gnu: linux-libre@4.9: Update to 4.9.173....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.173. Mark H Weaver
2019-05-05gnu: docker: Refer to xz by its absolute path....* gnu/packages/docker.scm (docker)[inputs]: Add xz. [phases]{patch-paths}: Patch the reference to xz. Maxim Cournoyer
2019-05-05gnu: docker: Patch the reference to the docker proxy....* gnu/packages/docker.scm (docker)[inputs]: Add docker-libnetwork-cmd-proxy. * gnu/packages/docker.scm (docker)[phases]{patch-paths}: Patch proxy.go to refer to the docker-proxy binary by its absolute path. Maxim Cournoyer
2019-05-05gnu: docker: Optimize substitution macros....This change halves the time needed to patch the paths. * gnu/packages/docker.scm (docker)[phases]{patch-paths}: Allow passing multiple SOURCE-TEXT, PACKAGE and RELATIVE-PATH tuples so that the rewrite rules can be generated and processed by a single use of the SUBSTITUTE* macro. Rename SUBSTITUTE-LOOKPATH to SUBSTITUTE-LOOKPATH* and substitute-Command to SUBSTITUTE-COMMAND* to denote the change. Adapt the uses of SUBSTITUTE-LOOKPATH* and SUBSTITUTE-COMMAND*. Maxim Cournoyer
2019-05-05gnu: docker: Make macros use a relative path as argument....* gnu/packages/docker.scm (docker)[phases]: Move implementation detail inside the SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND macros definition, so that the relative path argument can be given as a relative path. Maxim Cournoyer
2019-05-05gnu: docker: Harmonize LookPath regexes....* gnu/packages/docker.scm (docker)[phases]: In the patch-paths phase, update the regexes used by SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND to match at the start of the word, like it's done later. Maxim Cournoyer
2019-05-05gnu: docker: Cleanup extraneous comments....* gnu/packages/docker.scm (docker): Remove "parenthesis-balancing" comments. Maxim Cournoyer
2019-05-05gnu: docker: Fix indentation....* gnu/packages/docker.scm (docker): Fix indentation using Emacs. Maxim Cournoyer
2019-05-05gnu: Add docker-libnetwork-cmd-proxy....* gnu/packages/docker.scm (docker-libnetwork-cmd-proxy): New variable. Maxim Cournoyer
2019-05-05gnu: Add docker-libnetwork....* gnu/packages/docker.scm (docker-libnetwork): New private variable. Maxim Cournoyer
2019-05-05gnu: Add go-netlink....* gnu/packages/linux.scm (go-netlink): New variable. Maxim Cournoyer
2019-05-05gnu: Add go-netns....* gnu/packages/networking.scm (go-netns): New variable. Maxim Cournoyer
2019-05-05gnu: Add go-sctp....* gnu/packages/networking.scm (go-sctp): New variable. Maxim Cournoyer
2019-05-06gnu: r-chippeakanno: Update to 3.18.0....* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.0. [propagated-inputs]: Add r-rtracklayer. Ricardo Wurmus
2019-05-06gnu: r-arrmnormalization: Update to 1.24.0....* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.24.0. Ricardo Wurmus
2019-05-06gnu: r-progeny: Update to 1.6.0....* gnu/packages/bioconductor.scm (r-progeny): Update to 1.6.0. Ricardo Wurmus
2019-05-06gnu: r-rbowtie2: Update to 1.6.0....* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.6.0. Ricardo Wurmus
2019-05-06gnu: r-zfpkm: Update to 1.6.0....* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.6.0. Ricardo Wurmus
2019-05-06gnu: r-webbioc: Update to 1.56.0....* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.56.0. Ricardo Wurmus
2019-05-06gnu: r-widgettools: Update to 1.62.0....* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.62.0. Ricardo Wurmus
2019-05-06gnu: r-wiggleplotr: Update to 1.8.0....* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.8.0. Ricardo Wurmus
2019-05-06gnu: r-wrench: Update to 1.2.0....* gnu/packages/bioconductor.scm (r-wrench): Update to 1.2.0. Ricardo Wurmus
2019-05-06gnu: r-xcms: Update to 3.6.0....* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.0. Ricardo Wurmus
2019-05-06gnu: r-massspecwavelet: Update to 1.50.0....* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.50.0. Ricardo Wurmus
2019-05-06gnu: r-xbseq: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.16.0. Ricardo Wurmus
2019-05-06gnu: r-roar: Update to 1.20.0....* gnu/packages/bioconductor.scm (r-roar): Update to 1.20.0. Ricardo Wurmus
2019-05-06gnu: r-yarn: Update to 1.10.0....* gnu/packages/bioconductor.scm (r-yarn): Update to 1.10.0. Ricardo Wurmus
2019-05-06gnu: r-quantro: Update to 1.18.0....* gnu/packages/bioconductor.scm (r-quantro): Update to 1.18.0. Ricardo Wurmus
2019-05-06gnu: r-yaqcaffy: Update to 1.44.0....* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.44.0. Ricardo Wurmus
2019-05-06gnu: r-simpleaffy: Update to 2.60.0....* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.60.0. Ricardo Wurmus
2019-05-06gnu: r-gcrma: Update to 2.56.0....* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.56.0. Ricardo Wurmus
2019-05-06gnu: r-yapsa: Update to 1.10.0....* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.10.0. Ricardo Wurmus
2019-05-06gnu: r-somaticsignatures: Update to 2.20.0....* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.20.0. Ricardo Wurmus
2019-05-06gnu: r-gtrellis: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.0. Ricardo Wurmus
2019-05-06gnu: r-yamss: Update to 1.10.0....* gnu/packages/bioconductor.scm (r-yamss): Update to 1.10.0. Ricardo Wurmus
2019-05-06gnu: r-ebimage: Update to 4.26.0....* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.26.0. Ricardo Wurmus
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