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2018-09-10gnu: libgd: Incorporate grafted changes.Marius Bakke
* gnu/packages/gd.scm (gd)[replacement]: Remove field. [source](patches): Add "gd-CVE-2018-5711.patch" and "gd-CVE-2018-1000222.patch". (gd/fixed): Remove variable. * gnu/packages/php.scm (gd-for-php): Remove variable. (php)[inputs]: Change GD-FOR-PHP to GD.
2018-09-10Merge branch 'master' into core-updatesMarius Bakke
2018-09-10gnu: jbig2dec: Remove graft for 0.15.Marius Bakke
* gnu/packages/image.scm (jbig2dec): Update to 0.15. [source]: Reindent. (jbig2dec-0.15): Remove variable.
2018-09-10gnu: OpenSSL: Remove obsolete workaround.Marius Bakke
* gnu/packages/tls.scm (openssl)[arguments]: Remove workaround that is not needed for GCC version 5.3 and later.
2018-09-09gnu: certbot: Update to 0.27.1.Leo Famulari
* gnu/packages/tls.scm (python-acme): Update to 0.27.1. [arguments]: Use invoke. (certbot): Update to 0.27.1. [native-inputs]: Use python-sphinx-1.6.
2018-09-09gnu: libgd: Fix CVE-2018-{5711,1000222}.Leo Famulari
* gnu/packages/patches/gd-CVE-2018-1000222.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gd.scm (gd/fixed): New variable. * gnu/packages/php.scm (gd-for-php)[source]: Use 'gd-CVE-2018-1000222.patch'.
2018-09-09gnu: r-chron: Update to 2.3-53.Ricardo Wurmus
* gnu/packages/statistics.scm (r-chron): Update to 2.3-53.
2018-09-09gnu: r-annotationhub: Update to 2.12.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.1.
2018-09-09gnu: r-chippeakanno: Update to 3.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.2.
2018-09-09gnu: Update texmaker to 5.0.2.Roel Janssen
* gnu/packages/tex.scm (texmaker): Update to 5.0.2.
2018-09-09gnu: mariadb: Move unbundle substitutions to source snippet.Marius Bakke
* gnu/packages/databases.scm (mariadb)[source](snippet): Add two substitutions from ... [arguments]: The 'unbundle' phase here. Rename to 'fix-pcre-detection.
2018-09-09gnu: mariadb: Update to 10.1.36.Marius Bakke
* gnu/packages/databases.scm (mariadb): Update to 10.1.36. [arguments]: Disable one new test.
2018-09-09gnu: jbig2dec: Don't build libjbig2dec.a.Marius Bakke
* gnu/packages/image.scm (jbig2dec)[arguments]: New field.
2018-09-09gnu: util-linux: Remove static library reference from '.la' files.Marius Bakke
* gnu/packages/linux.scm (util-linux)[arguments]: Substitute all '.la' files.
2018-09-09gnu: cmake: Update to 3.12.2.Marius Bakke
* gnu/packages/cmake.scm (cmake): Update to 3.12.2.
2018-09-09gnu: gdk-pixbuf: Update to 2.38.0.Marius Bakke
* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.38.0. [build-system]: Switch to MESON-BUILD-SYSTEM. [arguments]: Don't explicitly enable x11 in #:configure-flags. Prevent tests from getting installed. Adjust test substitutions. Add phase to fix install. [native-inputs]: Add GETTEXT-MINIMAL. (gdk-pixbuf+svg)[arguments]: Adjust accordingly.
2018-09-09gnu: gtk+: Update to 3.24.0.Marius Bakke
* gnu/packages/gtk.scm (gtk+): Update to 3.24.0.
2018-09-09gnu: mesa: Update to 18.1.8.Marius Bakke
* gnu/packages/gl.scm (mesa): Update to 18.1.8.
2018-09-09gnu: Python: Delete broken test.Marius Bakke
* gnu/packages/python.scm (python-3.7)[source](snippet): Delete test which may crash some systems.
2018-09-09gnu: OpenBLAS: Update to 0.3.3.Marius Bakke
* gnu/packages/maths.scm (openblas): Update to 0.3.3.
2018-09-09gnu: meson: Update to 0.47.2.Marius Bakke
* gnu/packages/build-tools.scm (meson): Update to 0.47.2.
2018-09-09gnu: python-hypothesis: Update to 3.70.3.Marius Bakke
* gnu/packages/check.scm (python-hypothesis): Update to 3.70.3.
2018-09-09gnu: python-pytest: Update to 3.8.0.Marius Bakke
* gnu/packages/check.scm (python-pytest): Update to 3.8.0.
2018-09-09gnu: fontconfig: Update to 2.13.1.Marius Bakke
* gnu/packages/fontutils.scm (fontconfig): Update to 2.13.1.
2018-09-09gnu: python-scipy: Update to 1.1.0.Marius Bakke
* gnu/packages/python.scm (python-scipy): Update to 1.1.0.
2018-09-09gnu: libcmis: Fix FTBFS with Boost >= 1.68.0.Marius Bakke
* gnu/packages/libreoffice.scm (libcmis)[arguments]: Add phase to substitute header file name.
2018-09-09gnu: vigra: Fix FTBFS with Numpy >= 1.15.Marius Bakke
* gnu/packages/image.scm (vigra)[arguments]: Disable one more test.
2018-09-09gnu: oath-toolkit: Fix FTBFS with Glibc >= 2.28.Marius Bakke
* gnu/packages/patches/oath-toolkit-glibc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/authentication.scm (oath-toolkit)[source](patches): New field.
2018-09-09gnu: openssl: Update to 1.0.2p.Marius Bakke
* gnu/packages/patches/openssl-1.0.2-CVE-2018-0495.patch, gnu/packages/patches/openssl-1.0.2-CVE-2018-0732.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/tls.scm (openssl): Update to 1.0.2p. [source](patches): Remove obsolete.
2018-09-09gnu: curl: Remove graft for 7.61.1.Marius Bakke
* gnu/packages/curl.scm (curl): Update to 7.61.1. (curl-7.61.1): Remove variable.
2018-09-09gnu: ghostscript: Remove graft for 9.24.Marius Bakke
* gnu/packages/patches/ghostscript-CVE-2018-10194.patch, gnu/packages/patches/ghostscript-runpath.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/ghostscript.scm (ghostscript): Update to 9.24. (ghostscript/fixed): Remove variable.
2018-09-09Merge branch 'master' into core-updatesMarius Bakke
2018-09-09gnu: ghostscript: Update replacement to 9.24 [security fixes].Marius Bakke
The following CVEs are fixed with this release: CVE-2018-15908, CVE-2018-15909, CVE-2018-15910, CVE-2018-15911, CVE-2018-16509, CVE-2018-16510, CVE-2018-16511, CVE-2018-16513, CVE-2018-16539, CVE-2018-16540, CVE-2018-16541, CVE-2018-16542, CVE-2018-16543. * gnu/packages/patches/ghostscript-CVE-2018-10194.patch: Delete file. * gnu/packages/patches/ghostscript-CVE-2018-16509.patch, gnu/packages/patches/ghostscript-bug-699708.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ghostscript.scm (ghostscript/fixed): Update to 9.24. [source](patches): Remove 'ghostscript-CVE-2018-10194.patch' and 'ghostscript-runpath.patch'. Add 'ghostscript-CVE-2018-16509.patch' and 'ghostscript-bug-699708.patch'. [arguments]: Add LDFLAGS to #:configure-flags, and a phase to create output directory.
2018-09-09gnu: jbig2dec: Replace with 0.15 [security fixes].Marius Bakke
* gnu/packages/image.scm (jbig2dec-0.15): New public variable. (jbig2dec)[replacement]: New field.
2018-09-09gnu: OpenBLAS: Update source URI.Marius Bakke
* gnu/packages/maths.scm (openblas)[source](uri): Use the more stable SourceForge mirror.
2018-09-09gnu: openal: Update to 1.19.0.Marius Bakke
* gnu/packages/audio.scm (openal): Update to 1.19.0.
2018-09-09gnu: glm: Update to 0.9.9.1.Marius Bakke
* gnu/packages/maths.scm (glm): Update to 0.9.9.1.
2018-09-09gnu: msmtp: Remove unneeded input.Marius Bakke
* gnu/packages/mail.scm (msmtp)[inputs]: Remove LIBIDN, which is only required when using OpenSSL (or GnuTLS sans IDN support).
2018-09-09gnu: msmtp: Update to 1.8.0.Marius Bakke
* gnu/packages/mail.scm (msmtp): Update to 1.8.0.
2018-09-09gnu: libsoup: Update to 2.64.0.Marius Bakke
* gnu/packages/gnome.scm (libsoup): Update to 2.64.0. [inputs]: Add LIBPSL.
2018-09-09gnu: mpfr: Update home page.Marius Bakke
* gnu/packages/multiprecision.scm (mpfr)[home-page]: Use HTTPS.
2018-09-09gnu: julia: Update objconv input.Marius Bakke
* gnu/packages/julia.scm (julia)[inputs]: Update the hash of "objconv", which does not have a stable URL. Add a file name and use HTTPS while at it.
2018-09-09gnu: cloc: Update to 1.78.Tobias Geerinckx-Rice
* gnu/packages/code.scm (cloc): Update to 1.78. [source]: Update URI.
2018-09-09gnu: signify: Update to 24.Tobias Geerinckx-Rice
* gnu/packages/crypto.scm (signify): Update to 24.
2018-09-09gnu: musl: Update to 1.1.20.Tobias Geerinckx-Rice
* gnu/packages/musl.scm (musl): Update to 1.1.20.
2018-09-09gnu: perl-pegex: Update to 0.67.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-pegex): Update to 0.67.
2018-09-09gnu: perl-config-autoconf: Update to 0.317.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-config-autoconf): Update to 0.317.
2018-09-09gnu: perl-extutils-installpaths: Update to 0.012.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-extutils-installpaths): Update to 0.012.
2018-09-09gnu: perl-extutils-helpers: Update to 0.026.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-extutils-helpers): Update to 0.026.
2018-09-09gnu: perl-getopt-long-descriptive: Update to 0.103.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.103.
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