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2020-02-25gnu: jamm: Update to 1.0.7.6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (jamm): Update to 1.0.7.6.
2020-02-25gnu: Add r-bsgenome-hsapiens-ncbi-grch38.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-02-25gnu: plantuml: Update to 1.2020.1.Jelle Licht
* gnu/packages/uml.scm (plantuml): Update to 1.2020.1. [arguments]<#:phases>[delete-extra-from-classpath]: Modify.
2020-02-25gnu: Add rust-png-0.12.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-png-0.12): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-png-0.14.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-png-0.14): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-png-0.15.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-png-0.15): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-servo-fontconfig-0.4.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-servo-fontconfig-0.4): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-servo-fontconfig-sys-4.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-servo-fontconfig-sys-4): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-servo-freetype-sys-4.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-servo-freetype-sys-4): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: rust-nix-0.15: Don't skip build.Efraim Flashner
* gnu/packages/crates-io.scm (rust-nix-0.15)[arguments]: Don't skip build. Skip tests. Move rust-cc-1.0 from cargo-development-inputs to cargo-inputs. Replace rust-rand-0.4 with 0.6, rust-sysctl-0.4 with 0.1 in cargo-development-inputs.
2020-02-25gnu: Add rust-sema-0.1.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-sema-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-expat-sys-2.1.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-expat-sys-2.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-gif-0.10.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-gif-0.10): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-memmap-0.2.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-memmap-0.2): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-color-quant-1.0.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-color-quant-1.0): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: datamash: Update to 1.6.Efraim Flashner
* gnu/packages/datamash.scm (datamash): Update to 1.6.
2020-02-25gnu: font-fantasque-sans: Update to 1.8.0.Tobias Geerinckx-Rice
* gnu/packages/fonts.scm (font-fantasque-sans): Update to 1.8.0. [native-inputs]: Remove ttf2eot. [arguments]: Rename the ‘xrange->range’ phase to ‘support-python@3’. Patch another Python twoism.
2020-02-25Revert "gnu: vim: Fix build on CoW file systems."Tobias Geerinckx-Rice
This reverts commit b947ba77e60d3d3c5cc6a1c914096e7dab1f7db7.
2020-02-24gnu: ungoogled-chromium: Update to 80.0.3987.116-0.bb952f1.Marius Bakke
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for Chromium 80. (%chromium-version): Set to 80.0.3987.116. (%ungoogled-revision): Set to bb952f18c8c80c569583edd8dbb0b54443f49043. (%debian-revision): Set to debian/80.0.3987.116-1. (%chromium-origin, %ungoogled-origin, %debian-origin): Update hashes. (ungoogled-chromium)[arguments]: In #:configure-flags, add "is_cfi=false". Remove "is_clang", "enable_iterator_debugging", "exclude_unwind_tables", "use_jumbo_build", "jumbo_file_merge_limit". Adjust environment for building with Clang. [native-inputs]: Remove GCC-8. Add CLANG-9 and LD-WRAPPER-NEXT.
2020-02-24gnu: Add ld wrapper variant that supports quotes in response files.Marius Bakke
* gnu/packages/ld-wrapper-next.in: New file. * gnu/local.mk (MISC_DISTRO_FILES): Adjust accordingly. * gnu/packages/chromium.scm (ld-wrapper-next): New variable.
2020-02-24gnu: Add libtcod.Giacomo Leidi
* gnu/packages/game-development.scm (libtcod): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2020-02-24gnu: Add lodepng.Giacomo Leidi
* gnu/packages/image.scm (lodepng): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2020-02-24gnu: python-igraph: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/graph.scm (python-igraph): Update to 0.8.0. [arguments]: Replace build phase; move check phase after install phase; pass "--use-pkg-config" to avoid rebuilding igraph. [propagated-inputs]: Add python-texttable. [native-inputs]: Add python-pytest.
2020-02-24gnu: python-texttable: Update to 1.6.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-texttable): Update to 1.6.2. [arguments]: Replace check phase. [native-inputs]: Add python-pytest. [license]: Change to Expat.
2020-02-24gnu: igraph: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/graph.scm (igraph): Update to 0.8.0.
2020-02-24gnu: opensmtpd: Update to 6.6.4p1 [security fixes].Tobias Geerinckx-Rice
See <https://www.mail-archive.com/misc@opensmtpd.org/msg04888.html>. * gnu/packages/mail.scm (opensmtpd): Update to 6.6.4p1.
2020-02-24gnu: mesa-opencl: Build with clang@8.Marius Bakke
* gnu/packages/gl.scm (mesa-opencl)[native-inputs]: Change from CLANG to CLANG-8.
2020-02-24gnu: LLVM: Promote LLVM 9 to the default 'llvm' package.Marius Bakke
* gnu/packages/llvm.scm (llvm-8): Rename to ... (llvm): ... this. Update to 9.0.1. [license]: Change to ASL2.0. (clang-runtime-from-llvm)[license]: Inherit from LLVM. (clang-from-llvm)[license]: Conditionally choose license based on version. (llvm-9, clang-runtime-8, clang-8, clang-toolchain-8): New public variables. (llvm-7): Inherit from LLVM-8 (for the license change). (llvm-6): Inherit from LLVM-7. (llvm-3.9.1): Inherit from LLVM-6. (llvm-3.8): Inherit from LLVM-3.9.1. (llvm-3.7): Inherit from LLVM-3.8. (llvm-3.6): Inherit from LLVM-3.7. (llvm-3.5): Inherit from LLVM-3.6. (libcxx, libclc, libomp): Update to 9.0.1.
2020-02-24gnu: mesa: Build with llvm@8 explicitly.Marius Bakke
* gnu/packages/gl.scm (mesa)[inputs]: Change from LLVM to LLVM-8.
2020-02-24gnu: clang: Use the correct CLANG-RUNTIME for versions 6 and 7.Marius Bakke
* gnu/packages/llvm.scm (clang-7): Use CLANG-RUNTIME-7. (clang-6): Use CLANG-RUNTIME-6.
2020-02-24gnu: Reorganize llvm.scm.Marius Bakke
* gnu/packages/llvm.scm (libcxx, libclc, libomp, libcxx-6): Move package definitions below the various LLVM/Clang variants.
2020-02-24gnu: freecad. Use qt-build-system.John Soo
* gnu/packages/engineering.scm (freecad)[build-system]: Use qt-build-system. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2020-02-24gnu: freecad. Fix build failure.John Soo
* gnu/packages/engineering.scm (freecad)[inputs]: Use qtbase-patched instead of qtbase. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2020-02-24gnu: qtbase: Add variant that fixes file name handling in CMake macros.John Soo
* gnu/packages/patches/qtbase-QTBUG-81715.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/qt.scm (qtbase-patched): New public variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2020-02-24gnu: clang@9: Update to 9.0.1.Marius Bakke
* gnu/packages/llvm.scm (llvm-9): Update to 9.0.1. clang-runtime-9, clang-9): Update hashes.
2020-02-24gnu: llvm: Add helper procedure for constructing download URLs.Marius Bakke
...in preparation for LLVM 9.0.1 which is no longer hosted on llvm.org. * gnu/packages/llvm.scm (llvm-download-uri): New procedure. (llvm-8, clang-runtime-from-llvm, clang-from-llvm, libcxx, libomp, llvm-9, llvm-7, llvm-6, libcxx-6, llvm-3.9.1, llvm-3.8, llvm-3.7, llvm-3.6, llvm-3.5)[source](uri): Use it.
2020-02-24gnu: clang@9: Fix search path handling.Marius Bakke
* gnu/packages/patches/clang-9.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/llvm.scm (clang-9): Add #:patches.
2020-02-24gnu: node: Increase build timeouts.Marius Bakke
* gnu/packages/node.scm (node)[properties]: Add MAX-SILENT-TIME. Increase TIMEOUT from 3600 seconds to 14400.
2020-02-24gnu: espeak-ng: Update to 1.50.Marius Bakke
* gnu/packages/speech.scm (espeak-ng): Update to 1.50. [source]: Change to GIT-FETCH. [native-inputs]: Add AUTOCONF, AUTOMAKE, LIBTOOL, and WHICH.
2020-02-24gnu: libgme: Remove obsolete workaround.Marius Bakke
* gnu/packages/music.scm (libgme)[native-inputs]: Remove.
2020-02-24gnu: python-libarchive-c: Update to 2.9.Marius Bakke
* gnu/packages/python-xyz.scm (python-libarchive-c): Update to 2.9.
2020-02-24gnu: git-repo: Update to 2.3.Maxim Cournoyer
* gnu/packages/android.scm (git-repo): Update to 2.3. [arguments]: Remove the #:python argument. git-repo v2.x is now compatible with Python 3. [phases]{configure-git}: New phase. {set-executable-paths}: Adapt the substitution rule for the GIT command. {check}: Use the "run_tests" script to launch tests. [native-inputs]: Replace python2-nose by python-test.
2020-02-24gnu: rust-cbindgen: Update to 0.13.1.Efraim Flashner
* gnu/packages/rust-apps.scm (rust-cbindgen): Update to 0.13.1.
2020-02-24gnu: rust-encoding-rs-io-0.1: Upgrade to 0.1.7.Efraim Flashner
* gnu/packages/crates-io.scm (rust-encoding-rs-io-0.1): Upgrade to 0.1.7. [arguments]: Don't skip build.
2020-02-24gnu: Add rust-serde-cbor-0.11.Efraim Flashner
* gnu/packages/crates-io.scm (rust-serde-cbor-0.11): New variable. (rust-serde-cbor-0.10): Inherit from rust-serde-cbor-0.11.
2020-02-24gnu: wxwidgets-2: Fix build.Ricardo Wurmus
* gnu/packages/wxwidgets.scm (wxwidgets-2)[arguments]: Add phase ignore-narrowing-errors to patch "configure" script.
2020-02-24gnu: Add rust-euclid-0.20.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-euclid-0.20): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-24gnu: Add rust-dlib-0.4.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-dlib-0.4): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-24gnu: Add rust-deflate-0.7.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-deflate-0.7): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-24gnu: Add rust-gzip-header-0.3.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-gzip-header-0.3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>