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2022-05-12gnu: python-sparqlkernel: Use gexps and fix inputs....[arguments]: Use gexps. [tests?]: Add comment. [phases]: Delete trailing #t. {no-custom-css}: Use a regular lambda. {install-kernelspec}: Move after the add-installed-pythonpath phase. Remove now extraneous add-installed-pythonpath call. Adjust for gexps. [native-inputs]: Delete field. [propagated-inputs]: Add python-ipykernel, python-notebook, python-rdflib and pythopython-traitlets. [description]: Avoid '&' in description. Maxim Cournoyer
2022-05-12gnu: python-sparqlwrapper: Update to 2.0.0....* gnu/packages/rdf.scm (python-sparqlwrapper): Update to 2.0.0. [source]: Adjust Git URI. Maxim Cournoyer
2022-05-12gnu: python-voila: Update to 0.3.5....* gnu/packages/jupyter.scm (python-voila): Update to 0.3.5. [source]: Use git. [arguments]: New field. [propagated-inputs]: Add python-jupyterlab-server, python-traitlets and python-websockets. [native-inputs]: Remove python-jupyter-packaging and python-setuptools. Add python-numpy and python-pandas. Maxim Cournoyer
2022-05-12gnu: python-jupyter-server: Update to 1.16.0....* gnu/packages/jupyter.scm (python-jupyter-server): Update to 1.16.0. [propagated-inputs]: Remove python-ipython-genutils and python-requests-unixsocket. Maxim Cournoyer
2022-05-12gnu: python-umap-learn: Update to 0.5.3....* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.3. [source]: Use git. [arguments]: New field. [native-inputs]: Delete python-joblib and python-nose. Add python-pytest. [propagated-inputs]: Add python-pynndescent and python-tqdm. [synopsis]: Fix indentation. [description]: Fix typo and re-indent. Maxim Cournoyer
2022-05-12gnu: python-pynndescent: Update to 0.5.6....* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.6. [phases]{check}: Skip the test_weighted_minkowski test. [native-inputs, propagated-inputs]: Re-indent. Maxim Cournoyer
2022-05-12gnu: python-scikit-learn: Parallelize build and test suite....* gnu/packages/machine-learning.scm (python-scikit-learn) [phases]{configure}: New phase. {build-ext}: Add '-j' option. {check}: Add '-n' option. [native-inputs]: Add python-pytest-xdist. Maxim Cournoyer
2022-05-12gnu: python-pandas: Update to 1.4.2....* gnu/packages/python-science.scm (python-pandas): Update to 1.4.2. Maxim Cournoyer
2022-05-12gnu: python-pandas: Build and run tests in parallel....* gnu/packages/python-science.scm (python-pandas) [phases]{enable-parallel-build}: New phase. {check}: Add xdist -n option. Skip test_memory_usage test. [native-inputs]: Add python-pytest-xdist. Maxim Cournoyer
2022-05-12gnu: python-numba: Update to 0.55.1....* gnu/packages/python-xyz.scm (python-numba): Update to 0.55.1. Maxim Cournoyer
2022-05-12gnu: python-llvmlite: Update to 0.38.0....* gnu/packages/llvm.scm (python-llvmlite): Update to 0.38.0. Maxim Cournoyer
2022-05-12gnu: python-numpy: Update to 1.21.6 and parallelize build/tests....* gnu/packages/python-xyz.scm (python-numpy): Update to 1.21.6. Move inputs and native-inputs fields after arguments. Use gexps. [modules]: New argument. [phases]{parallelize-build}: New phase. {configure-blas}: Format via (ice-9 format). {fix-executable-paths}: Use search-file-input. Remove obsolete system_info.py substitution. {check}: Remove extraneous add-installed-pythonpath and setenv calls. Provide the '-n' pytest-xdist option. [native-inputs]: Use python-hypothesis-next. (python-numpy-next): Inherit from python-numpy. (python2-numpy): Adjust for gexps. [phases]{delete-failing-test}: Rename to... {delete-failing-tests}: ... this. (python2-numpy-1.8): Likewise, and delete 'delete-failing-tests' phase. Disable tests. [native-inputs]: Define as the empty list. Maxim Cournoyer
2022-05-12gnu: python-hypothesis-6.23: Update to 6.43.3....* gnu/packages/check.scm (python-hypothesis-6.23): Update to 6.43.3 and rename to... (python-hypothesis-next): ... this. [propagated-inputs]: Add python-pytest. * gnu/packages/matrix.scm (python-matrix-nio): Adjust accordingly. * gnu/packages/python-web.scm (python-h2): Likewise. * gnu/packages/check.scm (python-hypothesis)[home-page]: Update URL. Maxim Cournoyer
2022-05-12gnu: Add python-jupyterlab-server....* gnu/packages/jupyter.scm (python-jupyterlab-server): New variable. Maxim Cournoyer
2022-05-12gnu: Add python-openapi-core....* gnu/packages/python-web.scm (python-openapi-core): New variable. Maxim Cournoyer
2022-05-12gnu: Add python-dictpath....* gnu/packages/python-xyz.scm (python-dictpath): New variable. Maxim Cournoyer
2022-05-12gnu: python-falcon: Update to 3.1.0....* gnu/packages/python-web.scm (python-falcon): Update to 3.1.0. [source]: Use git. Adjust snippet. [phases]{check}: Set HOME and invoke pytests with "-vv". [native-inputs]: Add python-aiofiles, python-cbor2, python-fakeredis, python-httpx, python-pecan, python-pillow, python-pytest-asyncio and python-websockets. [synopsis, description]: Fix indentation. Maxim Cournoyer
2022-05-12gnu: python-fakeredis: Update to 1.7.1....* gnu/packages/databases.scm (python-fakeredis): Update to 1.7.1. [propagated-inputs]: Add python-aioredis. Maxim Cournoyer
2022-05-12gnu: Add python-aioredis....* gnu/packages/databases.scm (python-aioredis): New variable. Maxim Cournoyer
2022-05-12gnu: Add python-pecan....* gnu/packages/python-web.scm (python-pecan): New variable. Maxim Cournoyer
2022-05-12gnu: python-sqlalchemy: Update to 1.4.35....* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.35. Maxim Cournoyer
2022-05-12gnu: python-sqlalchemy: Run tests in parallel via xdist....* gnu/packages/databases.scm (python-sqlalchemy)[phases]: Use gexps. {check}: Run tests in parallel; skip slow test_memusage. * gnu/packages/databases.scm (python2-sqlalchemy): Adjust to avoid xdist. Maxim Cournoyer
2022-05-12gnu: Add python-socksio....* gnu/packages/python-web.scm (python-socksio): New variable. Maxim Cournoyer
2022-05-12gnu: python-uvicorn: Update to 0.17.6....* gnu/packages/python-web.scm (python-uvicorn): Update to 0.17.6. [phases]{check}: Delete extraneous add-installed-pythonpath and inputs/outputs arguments. Add the '-o' 'asyncio_mode=auto' option to pytest invocation, and skip two tests. [native-inputs]: Add python-httpx-bootstrap and python-pytest-asyncio. [propagated-inputs]: Add python-asgiref and python-dotenv. Maxim Cournoyer
2022-05-12gnu: python-httpx: Update to 0.22.0....* gnu/packages/python-web.scm (python-httpx): Update to 0.22.0. [phases]{check}: Add 'asyncio_mode=auto' pytest-asyncio option. Skip the 'test_main' test. [native-inputs]: Delete python-autoflake, python-black, python-cryptography, python-flake8, python-flake8-bugbear, python-flake8-pie, python-isort, python-mypy and python-pytest-cov. [propagated-inputs]: Add python-charset-normalizer. Maxim Cournoyer
2022-05-12gnu: Add python-httpx-bootstrap....* gnu/packages/python-web.scm (python-httpx-bootstrap): New variable. Maxim Cournoyer
2022-05-12gnu: Add python-httpcore-bootstrap....* gnu/packages/python-web.scm (python-httpcore-bootstrap): New variable. Maxim Cournoyer
2022-05-12gnu: python-httpcore: Update to 0.14.7 and enable tests....* gnu/packages/python-web.scm (python-httpcore): Update to 0.14.7. [tests?]: Delete argument. [phases]{check}: Streamline and delete coverage related pytest options. Strip trailing #t. [native-inputs]: Delete python-autoflake, python-flake8, python-flake8-bugbear, python-flake8-pie and python-mypy. Add python-pytest-httpbin. [propagated-inputs]: Add python-anyio, python-certifi and python-socksio. Maxim Cournoyer
2022-05-12gnu: Add python-cbor2....* gnu/packages/python-web.scm (python-cbor2): New variable. Maxim Cournoyer
2022-05-12gnu: Add python-openapi-spec-validator....* gnu/packages/python-web.scm (python-openapi-spec-validator): New variable. Maxim Cournoyer
2022-05-12gnu: Add python-openapi-schema-validator....* gnu/packages/python-web.scm (python-openapi-schema-validator): New variable. Maxim Cournoyer
2022-05-12gnu: Add python-rfc3339-validator....* gnu/packages/python-xyz.scm (python-rfc3339-validator): New variable. Maxim Cournoyer
2022-05-12gnu: Add python-strict-rfc3339....* gnu/packages/python-xyz.scm (python-strict-rfc3339): New variable. Maxim Cournoyer
2022-05-12gnu: python-websockets: Update to 10.3 and enable tests....* gnu/packages/python-web.scm (python-websockets): Fetch from git. Update to 10.3. [arguments]: Delete field, enabling tests. Maxim Cournoyer
2022-05-12gnu: python-ipython-documentation: Also build info and pdf targets....* gnu/packages/patches/python-ipython-documentation-chars.patch: New file. * gnu/packages/patches/python-ipython-documentation-repro.patch: Likewise. * gnu/local.mk: Register them. * gnu/packages/python-xyz.scm (python-ipython-documentation) [source]: Apply patches. [arguments]: Use gexps. [phases]{sanitize-sources}: New phase. {configure-sphinx-for-xelatex}: Likewise. {install}: Streamline. Also build and install the PDF and info manual. Enable parallel processing. [inputs]: Delete field. [propagated-inputs]: Remove texlive-updmap.cfg input. Add fontconfig, font-gnu-freefont, graphviz, python-docrepr, texlive-polyglossia, texlive-bin and texlive-xindy. Maxim Cournoyer
2022-05-12gnu: Add texlive-xindy....* gnu/packages/tex.scm (texlive-xindy): New variable. Maxim Cournoyer
2022-05-12gnu: Add texlive-cm-lgc....* gnu/packages/tex.scm (texlive-cm-lgc): New variable. Maxim Cournoyer
2022-05-12gnu: texlive-latex-geometry: Propagate texlive-latex-graphics....* gnu/packages/tex.scm (texlive-latex-geometry) [propagated-inputs]: Add texlive-latex-graphics. Maxim Cournoyer
2022-05-12gnu: Add texlive-cbfonts....* gnu/packages/tex.scm (texlive-cbfonts): New variable. Maxim Cournoyer
2022-05-12gnu: Add texlive-cbfonts-fd....* gnu/packages/tex.scm (texlive-cbfonts-fd): New variable. Maxim Cournoyer
2022-05-12gnu: texlive-polyglossia: Rename and fix package....Fixes <https://issues.guix.gnu.org/35780>. * gnu/packages/tex.scm (texlive-latex-polyglossia): Rename to... (texlive-polyglossia): ... this. Inherit from a simple-texlive-package package. [version, source, build-system]: Remove field, now inherited. [outputs]: New field. [arguments]: Add the #:tex-format and #:phases arguments. [native-inputs, propagated-inputs]: New fields. [description]: Expound description. Reported-by: Josh Holland Maxim Cournoyer
2022-05-12gnu: texlive-fontspec: Add missing propagated inputs....* gnu/packages/tex.scm (texlive-fontspec) [propagated-inputs]: Add texlive-cm and texlive-lm. Maxim Cournoyer
2022-05-12gnu: Add python-sphinx-sitemap....* gnu/packages/sphinx.scm (python-sphinx-sitemap): New variable. Maxim Cournoyer
2022-05-12gnu: Add python-sphinx-theme-builder....* gnu/packages/sphinx.scm (python-sphinx-theme-builder): New variable. Maxim Cournoyer
2022-05-12gnu: Add python-pep621....* gnu/packages/python-xyz.scm (python-pep621): New variable. Maxim Cournoyer
2022-05-12gnu: python-sphinx: Propagate TexLive dependencies....* gnu/packages/sphinx.scm (python-sphinx): [propagated-inputs]: Add texlive-amsfonts, texlive-amsmath, texlive-capt-of, texlive-carlisle, texlive-etoolbox, texlive-generic-ltxcmds, texlive-hyperref, texlive-latex-base, texlive-latex-cmap, texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap, texlive-latex-float, texlive-latex-framed, texlive-latex-geometry, texlive-latex-graphics, texlive-latex-kvoptions, texlive-latex-needspace, texlive-latex-parskip, texlive-latex-preview, texlive-latex-tabulary, texlive-latex-titlesec, texlive-latex-tools, texlive-latex-upquote, texlive-latex-varwidth, texlive-oberdiek, texlive-stringenc, texlive-wrapfig, texlive-xcolor and texlive-zapfding. [native-inputs]: Remove graphviz, python-mock and python-nose. * gnu/packages/tex.scm (texlive-xcolor): Add TODO comment. * gnu/packages/tex.scm (texlive-hyperref): Likewise. Maxim Cournoyer
2022-05-12gnu: Add python-docrepr....* gnu/packages/documentation.scm (python-docrepr): New variable. Maxim Cournoyer
2022-05-12gnu: Add python-nbdime....* gnu/packages/jupyter.scm (python-nbdime): New variable. Maxim Cournoyer
2022-05-12gnu: python-notebook: Update to 6.4.10....* gnu/packages/python-xyz.scm (python-notebook): Update to 6.4.10. [phases]{check}: Remove add-installed-pythonpath. [native-inputs]: python-nest-asyncio. Maxim Cournoyer
2022-05-12gnu: python-send2trash: Update to 1.8.0 and update home page....* gnu/packages/python-xyz.scm (python-send2trash): Update to 1.8.0. [source]: Update Git URL. [phases]{pre-check}: Set HOME to /tmp directly. {check}: Override phase. [native-inputs]: Add python-pytest. [properties]: Delete field. (python2-send2trash): Delete variable. [home-page]: Update URL. Maxim Cournoyer